Wall clock time and date at job start Mon Mar 8 2021 09:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.33391 * 125.20247 * 299.72460 * 4 2 1 6 6 C 1.38424 * 114.91765 * 179.86256 * 5 4 2 7 7 S 1.76203 * 122.53730 * 180.20123 * 6 5 4 8 8 O 1.42104 * 106.40298 * 23.80308 * 7 6 5 9 9 O 1.42093 * 106.40259 * 156.72498 * 7 6 5 10 10 N 1.65600 * 107.21666 * 270.26463 * 7 6 5 11 11 C 1.46502 * 119.99919 * 65.00070 * 10 7 6 12 12 H 1.09007 * 112.85243 * 346.19356 * 11 10 7 13 13 C 1.53775 * 113.61656 * 117.50389 * 11 10 7 14 14 C 1.53781 * 87.08429 * 139.97870 * 13 11 10 15 15 H 1.08998 * 113.61143 * 89.11369 * 14 13 11 16 16 C 1.50700 * 113.69432 * 220.00808 * 14 13 11 17 17 N 1.30496 * 125.65204 * 192.22984 * 16 14 13 18 18 C 1.34124 * 109.25664 * 179.89289 * 17 16 14 19 19 C 1.34665 * 108.01979 * 0.36863 * 18 17 16 20 20 N 1.35043 * 125.64559 * 12.53681 * 16 14 13 21 21 C 1.53781 * 113.61266 * 215.00145 * 11 10 7 22 22 C 1.33381 * 114.92298 * 0.42185 * 6 5 4 23 23 S 1.75881 * 125.20304 * 120.02525 * 4 2 1 24 24 H 0.96708 * 114.00101 * 59.99198 * 1 2 3 25 25 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 26 26 H 1.48497 * 110.00028 * 298.68295 * 3 2 1 27 27 H 1.48501 * 109.99652 * 59.99990 * 3 2 1 28 28 H 1.07998 * 122.53584 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00181 * 245.00255 * 10 7 6 30 30 H 1.08998 * 113.61412 * 254.52802 * 13 11 10 31 31 H 1.09001 * 113.61435 * 25.43334 * 13 11 10 32 32 H 1.08000 * 125.98914 * 180.10863 * 18 17 16 33 33 H 1.08003 * 126.59093 * 179.81439 * 19 18 17 34 34 H 0.97000 * 126.40051 * 359.97438 * 20 16 14 35 35 H 1.08997 * 113.61736 * 334.56300 * 21 11 10 36 36 H 1.08999 * 113.61711 * 105.38776 * 21 11 10 37 37 H 1.08004 * 125.20560 * 179.75755 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6781 -1.9827 -1.5411 6 6 2.2451 -2.4175 -2.7266 7 16 2.0354 -4.0592 -3.3313 8 8 0.8365 -4.5515 -2.7485 9 8 2.2503 -4.0005 -4.7347 10 7 3.2679 -4.9725 -2.7074 11 6 3.3532 -5.1986 -1.2624 12 1 2.7067 -4.5325 -0.6909 13 6 3.2253 -6.6777 -0.8617 14 6 4.3285 -6.4107 0.1758 15 1 3.9483 -6.0771 1.1413 16 6 5.3302 -7.5300 0.2964 17 7 6.2191 -7.6566 1.2434 18 6 6.9360 -8.7701 1.0313 19 6 6.4793 -9.3515 -0.0943 20 7 5.4606 -8.5652 -0.5610 21 6 4.7955 -5.2612 -0.7328 22 6 2.9660 -1.5011 -3.3743 23 16 2.9472 0.0091 -2.4729 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5879 2.4586 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 1.0741 -2.6240 -0.9164 29 1 3.9334 -5.3578 -3.2986 30 1 2.2612 -6.9284 -0.4192 31 1 3.5242 -7.3706 -1.6483 32 1 7.7414 -9.1342 1.6518 33 1 6.8459 -10.2633 -0.5424 34 1 4.9313 -8.7222 -1.3586 35 1 5.5237 -5.5668 -1.4840 36 1 5.0996 -4.3678 -0.1874 37 1 3.4826 -1.6618 -4.3090 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14772064_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:42 Heat of formation + Delta-G solvation = 18.378836 kcal Electronic energy + Delta-G solvation = -25023.541216 eV Core-core repulsion = 21216.237808 eV Total energy + Delta-G solvation = -3807.303407 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.04501 -40.06079 -39.49424 -38.37024 -37.64568 -37.02855 -34.37388 -33.40849 -31.82411 -30.38082 -27.21662 -26.71310 -25.81141 -24.93341 -22.65451 -21.73691 -21.43089 -20.84589 -20.28186 -19.23439 -18.96590 -18.48098 -17.89629 -17.65339 -17.05645 -16.47196 -16.39396 -16.04359 -15.78184 -15.51738 -14.98756 -14.92136 -14.65747 -14.29100 -14.20171 -14.06828 -13.91378 -13.79539 -13.64656 -13.44256 -13.33503 -13.22443 -12.95032 -12.50654 -12.33676 -12.08002 -11.98701 -11.71488 -11.54658 -11.00560 -10.97683 -10.84525 -10.47997 -10.18782 -9.80178 -9.31092 -5.10125 -0.78904 -0.45174 0.36303 0.61716 0.96459 1.13213 1.21115 1.50497 1.85910 2.02091 2.16491 2.26106 2.67224 3.18394 3.31273 3.36802 3.44862 3.62512 3.63270 3.83442 3.91666 3.93448 4.19014 4.26727 4.30344 4.49687 4.56508 4.62952 4.66862 4.69779 4.76931 4.89028 4.91566 4.97606 5.07385 5.07565 5.16747 5.43442 5.82250 6.01280 6.35741 6.52450 7.17327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.039 4.039 3 Si 0.720 3.280 4 C -0.230 4.230 5 C -0.057 4.057 6 C -0.693 4.693 7 S 2.724 3.276 8 O -0.981 6.981 9 O -0.987 6.987 10 N -1.088 6.088 11 C 0.130 3.870 12 H 0.130 0.870 13 C -0.148 4.148 14 C -0.028 4.028 15 H 0.126 0.874 16 C 0.214 3.786 17 N -0.532 5.532 18 C -0.063 4.063 19 C -0.046 4.046 20 N -0.558 5.558 21 C -0.123 4.123 22 C -0.086 4.086 23 S 0.184 5.816 24 H 0.388 0.612 25 H 0.144 0.856 26 H -0.263 1.263 27 H -0.274 1.274 28 H 0.157 0.843 29 H 0.430 0.570 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.176 0.824 33 H 0.207 0.793 34 H 0.431 0.569 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 0.417 -1.346 4.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.151 4.151 3 Si 0.622 3.378 4 C -0.348 4.348 5 C -0.086 4.086 6 C -0.794 4.794 7 S 2.813 3.187 8 O -0.971 6.971 9 O -0.977 6.977 10 N -0.849 5.849 11 C 0.023 3.977 12 H 0.147 0.853 13 C -0.188 4.188 14 C -0.049 4.049 15 H 0.143 0.857 16 C -0.051 4.051 17 N -0.252 5.252 18 C -0.210 4.210 19 C -0.180 4.180 20 N -0.163 5.163 21 C -0.163 4.163 22 C -0.225 4.225 23 S 0.448 5.552 24 H 0.237 0.763 25 H 0.161 0.839 26 H -0.189 1.189 27 H -0.199 1.199 28 H 0.174 0.826 29 H 0.268 0.732 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.193 0.807 33 H 0.224 0.776 34 H 0.272 0.728 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.520 2.724 -0.772 5.334 hybrid contribution -1.314 -1.896 -1.081 2.548 sum 3.206 0.828 -1.852 3.794 Atomic orbital electron populations 1.86620 1.17927 1.80195 1.50112 1.24604 0.83350 1.10531 0.96587 0.94564 0.90417 0.73219 0.79597 1.25100 1.07879 0.98743 1.03056 1.19696 0.98610 0.95655 0.94664 1.29826 1.15400 1.25558 1.08647 1.00878 0.72958 0.72934 0.71977 1.93581 1.45285 1.79012 1.79175 1.93571 1.86030 1.87407 1.30678 1.55250 1.47591 1.66690 1.15398 1.22371 0.98855 0.97490 0.78988 0.85252 1.23627 0.99551 0.97573 0.98035 1.20899 0.92244 0.91064 1.00700 0.85655 1.23237 0.99762 0.92959 0.89123 1.70177 1.08629 1.20504 1.25874 1.22725 1.04025 0.94724 0.99538 1.23253 0.94552 1.00838 0.99381 1.43275 1.28888 1.20226 1.23903 1.23420 0.96075 0.98514 0.98297 1.26210 0.97621 0.95969 1.02691 1.84379 1.45477 1.12112 1.13196 0.76267 0.83864 1.18898 1.19944 0.82576 0.73224 0.89097 0.88483 0.80704 0.77624 0.72809 0.88805 0.88780 0.78096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.30 12.86 -148.98 -1.92 -2.22 16 2 C -0.04 0.13 2.96 71.24 0.21 0.34 16 3 Si 0.72 -2.69 30.97 68.60 2.12 -0.57 16 4 C -0.23 0.60 5.72 24.59 0.14 0.74 16 5 C -0.06 0.06 9.47 21.22 0.20 0.27 16 6 C -0.69 1.02 5.86 21.21 0.12 1.14 16 7 S 2.72 0.78 5.74 -56.49 -0.32 0.45 16 8 O -0.98 -6.89 17.40 -128.00 -2.23 -9.11 16 9 O -0.99 -5.93 17.64 -128.00 -2.26 -8.19 16 10 N -1.09 7.50 5.79 -167.19 -0.97 6.54 16 11 C 0.13 -1.00 4.35 45.52 0.20 -0.80 16 12 H 0.13 -1.18 7.95 -2.38 -0.02 -1.20 16 13 C -0.15 1.08 7.36 31.12 0.23 1.31 16 14 C -0.03 0.13 4.29 -11.01 -0.05 0.08 16 15 H 0.13 -0.58 8.14 -2.39 -0.02 -0.60 16 16 C 0.21 0.26 7.37 138.13 1.02 1.27 16 17 N -0.53 -4.15 11.25 -188.14 -2.12 -6.27 16 18 C -0.06 -0.26 11.87 83.52 0.99 0.73 16 19 C -0.05 0.08 12.04 83.09 1.00 1.08 16 20 N -0.56 1.80 5.94 -186.27 -1.11 0.69 16 21 C -0.12 0.93 7.41 31.12 0.23 1.16 16 22 C -0.09 0.31 10.70 66.72 0.71 1.03 16 23 S 0.18 -0.84 20.58 -56.49 -1.16 -2.00 16 24 H 0.39 -1.76 8.70 -74.05 -0.64 -2.41 16 25 H 0.14 -0.88 7.96 -2.39 -0.02 -0.90 16 26 H -0.26 0.00 7.11 99.48 0.71 0.71 16 27 H -0.27 -0.84 7.11 99.48 0.71 -0.14 16 28 H 0.16 -0.22 7.97 -2.91 -0.02 -0.25 16 29 H 0.43 -4.62 8.94 -96.74 -0.87 -5.49 16 30 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.10 -0.97 6.65 -2.39 -0.02 -0.98 16 32 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 33 H 0.21 -1.77 8.06 -2.91 -0.02 -1.79 16 34 H 0.43 -4.04 7.54 -92.71 -0.70 -4.74 16 35 H 0.09 -0.74 8.09 -2.39 -0.02 -0.76 16 36 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.20 -1.53 8.00 -2.91 -0.02 -1.55 16 Total: 0.00 -27.72 344.12 -5.96 -33.69 By element: Atomic # 1 Polarization: -20.33 SS G_CDS: -1.02 Total: -21.35 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.01 Total: 8.34 kcal Atomic # 7 Polarization: 5.15 SS G_CDS: -4.19 Total: 0.96 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -6.40 Total: -19.53 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.12 Total: -0.57 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.49 Total: -1.55 kcal Total: -27.72 -5.96 -33.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14772064_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.067 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds