Wall clock time and date at job start Mon Mar 8 2021 11:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57879 * 2 1 4 4 O 1.42097 * 108.57629 * 228.97761 * 2 1 3 5 5 C 1.81391 * 101.92304 * 114.48919 * 2 1 3 6 6 H 1.09003 * 109.47583 * 300.00163 * 5 2 1 7 7 C 1.53004 * 109.47407 * 59.99780 * 5 2 1 8 8 C 1.52995 * 109.47583 * 179.97438 * 7 5 2 9 9 C 1.53004 * 109.47104 * 300.00524 * 8 7 5 10 10 H 1.08997 * 109.46987 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46916 * 299.99721 * 9 8 7 12 12 S 1.65604 * 119.99919 * 265.00226 * 11 9 8 13 13 O 1.42101 * 106.40134 * 178.53733 * 12 11 9 14 14 O 1.42098 * 106.40311 * 311.45912 * 12 11 9 15 15 C 1.76196 * 107.21933 * 65.00064 * 12 11 9 16 16 C 1.33388 * 122.53988 * 269.71058 * 15 12 11 17 17 S 1.75886 * 109.59591 * 179.90294 * 16 15 12 18 18 C 1.75882 * 90.97167 * 0.30191 * 17 16 15 19 19 C 1.50694 * 125.20831 * 179.79315 * 18 17 16 20 20 O 1.42899 * 109.47184 * 120.03904 * 19 18 17 21 21 Si 1.86307 * 109.46579 * 0.03996 * 19 18 17 22 22 C 1.33395 * 109.59172 * 359.82661 * 18 17 16 23 23 C 1.52993 * 109.47195 * 59.99648 * 9 8 7 24 24 C 1.53001 * 109.47347 * 299.99853 * 23 9 8 25 25 H 1.08999 * 109.47426 * 65.50794 * 1 2 3 26 26 H 1.08998 * 109.47096 * 185.51167 * 1 2 3 27 27 H 1.09006 * 109.47169 * 305.50874 * 1 2 3 28 28 H 1.09003 * 109.47072 * 300.00305 * 7 5 2 29 29 H 1.09003 * 109.46436 * 59.99681 * 7 5 2 30 30 H 1.08992 * 109.47536 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47097 * 59.99720 * 8 7 5 32 32 H 0.96996 * 120.00358 * 84.99677 * 11 9 8 33 33 H 1.08004 * 125.20295 * 0.02562 * 16 15 12 34 34 H 1.08998 * 109.47149 * 240.04288 * 19 18 17 35 35 H 0.96701 * 113.99998 * 299.99777 * 20 19 18 36 36 H 1.48495 * 109.99885 * 58.68471 * 21 19 18 37 37 H 1.48505 * 109.99755 * 179.97438 * 21 19 18 38 38 H 1.07999 * 122.54011 * 180.02562 * 22 18 17 39 39 H 1.09003 * 109.46938 * 180.02562 * 23 9 8 40 40 H 1.08998 * 109.47467 * 60.00521 * 23 9 8 41 41 H 1.08998 * 109.47382 * 300.00720 * 24 23 9 42 42 H 1.09002 * 109.47055 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 1 1.7610 -0.1172 2.4042 7 6 1.5884 -2.1412 1.6871 8 6 1.9050 -2.7620 3.0491 9 6 3.4218 -2.8453 3.2314 10 1 3.6474 -3.2880 4.2016 11 7 3.9962 -3.6765 2.1706 12 16 4.2727 -5.2871 2.4387 13 8 4.7933 -5.8124 1.2253 14 8 4.9573 -5.3754 3.6808 15 6 2.7041 -6.0526 2.6797 16 6 2.1416 -6.1727 3.8832 17 16 0.5876 -6.9820 3.7299 18 6 0.7993 -7.1239 1.9897 19 6 -0.1846 -7.7629 1.0440 20 8 -0.6121 -6.7996 0.0789 21 14 -1.6587 -8.3772 2.0035 22 6 1.9646 -6.5800 1.6351 23 6 4.0221 -1.4399 3.1595 24 6 3.7056 -0.8191 1.7974 25 1 -0.3634 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 -0.3634 0.5969 0.8366 28 1 0.5078 -2.0818 1.5568 29 1 2.0161 -2.7597 0.8980 30 1 1.4777 -3.7634 3.1002 31 1 1.4777 -2.1435 3.8384 32 1 4.2145 -3.2835 1.3110 33 1 2.5735 -5.8243 4.8098 34 1 0.2922 -8.6004 0.5348 35 1 -1.0463 -6.0251 0.4619 36 1 -2.2989 -7.2500 2.7278 37 1 -2.6370 -9.0091 1.0820 38 1 2.3051 -6.5529 0.6105 39 1 5.1028 -1.4993 3.2890 40 1 3.5948 -0.8214 3.9489 41 1 4.1328 -1.4376 1.0081 42 1 4.1336 0.1820 1.7461 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14783812_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:38 Heat of formation + Delta-G solvation = -133.784648 kcal Electronic energy + Delta-G solvation = -30547.618812 eV Core-core repulsion = 26261.733828 eV Total energy + Delta-G solvation = -4285.884984 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.050 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.52828 -39.60473 -38.24897 -38.05975 -37.74565 -37.09367 -36.88219 -35.08654 -32.44769 -31.91708 -30.95376 -30.33340 -27.32289 -25.00799 -24.44287 -24.11357 -21.64560 -21.30472 -20.14261 -19.87060 -19.23126 -18.79133 -18.17319 -18.00383 -17.75590 -17.48675 -17.14202 -16.68957 -16.51691 -16.23771 -16.00662 -15.68628 -15.46567 -15.05002 -14.96568 -14.54146 -14.42726 -14.30346 -14.25423 -14.15765 -14.03408 -13.89476 -13.52028 -13.19352 -13.15182 -13.11166 -13.05822 -12.96939 -12.89934 -12.77467 -12.53448 -12.52648 -12.38921 -12.17808 -12.05468 -11.86624 -11.66068 -11.14242 -10.93475 -10.71804 -10.29676 -9.93632 -5.24289 -1.15737 -0.80507 -0.56911 0.22024 0.48439 0.92442 1.04996 1.36295 1.57925 1.73505 1.96645 2.48960 2.68219 2.78140 3.08362 3.12131 3.18803 3.25630 3.43602 3.51673 3.59869 3.65471 3.70044 3.72865 3.80970 3.90176 4.00738 4.05917 4.10903 4.18223 4.31072 4.34381 4.43023 4.49505 4.56563 4.61891 4.70875 4.73905 4.76579 4.82233 4.89023 4.98974 5.02211 5.78913 6.14237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.414 3.586 3 O -0.937 6.937 4 O -0.933 6.933 5 C -0.571 4.571 6 H 0.142 0.858 7 C -0.111 4.111 8 C -0.135 4.135 9 C 0.146 3.854 10 H 0.101 0.899 11 N -1.110 6.110 12 S 2.706 3.294 13 O -0.949 6.949 14 O -0.952 6.952 15 C -0.684 4.684 16 C -0.088 4.088 17 S 0.159 5.841 18 C -0.227 4.227 19 C -0.034 4.034 20 O -0.520 6.520 21 Si 0.652 3.348 22 C -0.041 4.041 23 C -0.113 4.113 24 C -0.109 4.109 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.421 0.579 33 H 0.185 0.815 34 H 0.131 0.869 35 H 0.376 0.624 36 H -0.240 1.240 37 H -0.233 1.233 38 H 0.158 0.842 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 0.307 5.962 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.597 3.403 3 O -0.934 6.934 4 O -0.930 6.930 5 C -0.680 4.680 6 H 0.160 0.840 7 C -0.149 4.149 8 C -0.175 4.175 9 C 0.039 3.961 10 H 0.118 0.882 11 N -0.872 5.872 12 S 2.793 3.207 13 O -0.939 6.939 14 O -0.942 6.942 15 C -0.784 4.784 16 C -0.227 4.227 17 S 0.423 5.577 18 C -0.344 4.344 19 C -0.146 4.146 20 O -0.326 6.326 21 Si 0.550 3.450 22 C -0.069 4.069 23 C -0.153 4.153 24 C -0.148 4.148 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.258 0.742 33 H 0.203 0.797 34 H 0.148 0.852 35 H 0.224 0.776 36 H -0.164 1.164 37 H -0.156 1.156 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.303 -0.699 6.198 8.867 hybrid contribution -0.373 1.393 -0.999 1.754 sum -6.675 0.694 5.199 8.490 Atomic orbital electron populations 1.30302 1.26732 1.11655 1.12061 1.08170 0.78532 0.75808 0.77807 1.93622 1.79068 1.34331 1.86420 1.93617 1.78903 1.66854 1.53597 1.30248 1.05877 1.08631 1.23283 0.84023 1.21435 1.00679 0.92356 1.00410 1.22062 0.95995 1.02080 0.97347 1.20901 0.92367 0.92516 0.90313 0.88154 1.55715 1.80159 1.26992 1.24340 1.01701 0.73074 0.72171 0.73788 1.93630 1.76844 1.77505 1.45896 1.93613 1.69630 1.85804 1.45143 1.30061 1.27361 1.21884 0.99071 1.25922 0.97700 0.98398 1.00669 1.84423 1.16581 1.53892 1.02819 1.25008 1.01935 1.10326 0.97152 1.24417 1.02257 0.94303 0.93662 1.86671 1.78685 1.33717 1.33503 0.95199 0.79281 0.86352 0.84155 1.19616 0.91851 0.95751 0.99727 1.21700 1.02295 0.94341 0.96943 1.21372 0.90137 1.03338 0.99944 0.85059 0.85192 0.85226 0.90301 0.89277 0.90681 0.89779 0.74186 0.79747 0.85173 0.77623 1.16430 1.15559 0.82460 0.89699 0.89622 0.90083 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.06 10.17 101.05 1.03 4.08 16 2 S 2.41 -4.13 4.88 -107.50 -0.52 -4.65 16 3 O -0.94 -2.29 18.10 -57.83 -1.05 -3.34 16 4 O -0.93 -1.93 17.91 -57.83 -1.04 -2.96 16 5 C -0.57 2.57 2.58 -26.73 -0.07 2.50 16 6 H 0.14 -1.00 8.14 -51.92 -0.42 -1.42 16 7 C -0.11 0.54 4.80 -26.73 -0.13 0.41 16 8 C -0.13 0.69 5.64 -26.73 -0.15 0.54 16 9 C 0.15 -0.57 3.12 -67.93 -0.21 -0.79 16 10 H 0.10 -0.45 7.50 -51.93 -0.39 -0.84 16 11 N -1.11 2.60 4.74 -4.89 -0.02 2.58 16 12 S 2.71 1.30 5.78 -107.50 -0.62 0.68 16 13 O -0.95 -3.85 17.63 -57.17 -1.01 -4.86 16 14 O -0.95 -2.72 16.97 -57.17 -0.97 -3.69 16 15 C -0.68 0.61 4.99 -41.21 -0.21 0.40 16 16 C -0.09 0.20 9.76 29.04 0.28 0.49 16 17 S 0.16 -0.42 20.58 -107.50 -2.21 -2.63 16 18 C -0.23 0.32 5.72 -36.00 -0.21 0.11 16 19 C -0.03 0.06 2.96 36.00 0.11 0.16 16 20 O -0.52 0.30 12.86 -35.23 -0.45 -0.15 16 21 Si 0.65 -1.45 30.97 -169.99 -5.26 -6.71 16 22 C -0.04 0.02 9.56 -41.20 -0.39 -0.38 16 23 C -0.11 0.48 5.63 -26.73 -0.15 0.33 16 24 C -0.11 0.38 5.02 -26.73 -0.13 0.24 16 25 H 0.13 -0.57 8.14 -51.92 -0.42 -0.99 16 26 H 0.13 -0.83 6.87 -51.93 -0.36 -1.19 16 27 H 0.13 -0.84 8.14 -51.92 -0.42 -1.26 16 28 H 0.08 -0.55 6.56 -51.93 -0.34 -0.89 16 29 H 0.09 -0.37 7.36 -51.93 -0.38 -0.75 16 30 H 0.07 -0.39 6.19 -51.93 -0.32 -0.71 16 31 H 0.08 -0.54 8.14 -51.93 -0.42 -0.97 16 32 H 0.42 -1.30 6.81 -34.47 -0.23 -1.53 16 33 H 0.19 -0.80 8.00 -52.48 -0.42 -1.22 16 34 H 0.13 -0.28 7.96 -51.93 -0.41 -0.69 16 35 H 0.38 -1.43 8.70 45.56 0.40 -1.04 16 36 H -0.24 0.23 7.11 56.52 0.40 0.63 16 37 H -0.23 -0.17 7.11 56.52 0.40 0.23 16 38 H 0.16 -0.01 7.97 -52.49 -0.42 -0.43 16 39 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 40 H 0.09 -0.47 8.14 -51.93 -0.42 -0.89 16 41 H 0.08 -0.27 6.51 -51.93 -0.34 -0.60 16 42 H 0.09 -0.30 8.14 -51.93 -0.42 -0.73 16 LS Contribution 372.00 15.07 5.61 5.61 Total: 0.00 -14.92 372.00 -13.16 -28.08 By element: Atomic # 1 Polarization: -10.67 SS G_CDS: -5.37 Total: -16.05 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.23 Total: 8.11 kcal Atomic # 7 Polarization: 2.60 SS G_CDS: -0.02 Total: 2.58 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -4.51 Total: -15.01 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.26 Total: -6.71 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -3.36 Total: -6.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -14.92 -13.16 -28.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14783812_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.707 kcal (2) G-P(sol) polarization free energy of solvation -14.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds