Wall clock time and date at job start Mon Mar 8 2021 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57879 * 2 1 4 4 O 1.42097 * 108.57629 * 228.97761 * 2 1 3 5 5 C 1.81391 * 101.92304 * 114.48919 * 2 1 3 6 6 H 1.09003 * 109.47583 * 300.00163 * 5 2 1 7 7 C 1.53004 * 109.47407 * 59.99780 * 5 2 1 8 8 C 1.52995 * 109.47583 * 179.97438 * 7 5 2 9 9 C 1.53004 * 109.47104 * 300.00524 * 8 7 5 10 10 H 1.08997 * 109.46987 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46916 * 299.99721 * 9 8 7 12 12 S 1.65604 * 119.99919 * 265.00226 * 11 9 8 13 13 O 1.42101 * 106.40134 * 178.53733 * 12 11 9 14 14 O 1.42098 * 106.40311 * 311.45912 * 12 11 9 15 15 C 1.76196 * 107.21933 * 65.00064 * 12 11 9 16 16 C 1.33388 * 122.53988 * 269.71058 * 15 12 11 17 17 S 1.75886 * 109.59591 * 179.90294 * 16 15 12 18 18 C 1.75882 * 90.97167 * 0.30191 * 17 16 15 19 19 C 1.50694 * 125.20831 * 179.79315 * 18 17 16 20 20 O 1.42899 * 109.47184 * 120.03904 * 19 18 17 21 21 Si 1.86307 * 109.46579 * 0.03996 * 19 18 17 22 22 C 1.33395 * 109.59172 * 359.82661 * 18 17 16 23 23 C 1.52993 * 109.47195 * 59.99648 * 9 8 7 24 24 C 1.53001 * 109.47347 * 299.99853 * 23 9 8 25 25 H 1.08999 * 109.47426 * 65.50794 * 1 2 3 26 26 H 1.08998 * 109.47096 * 185.51167 * 1 2 3 27 27 H 1.09006 * 109.47169 * 305.50874 * 1 2 3 28 28 H 1.09003 * 109.47072 * 300.00305 * 7 5 2 29 29 H 1.09003 * 109.46436 * 59.99681 * 7 5 2 30 30 H 1.08992 * 109.47536 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47097 * 59.99720 * 8 7 5 32 32 H 0.96996 * 120.00358 * 84.99677 * 11 9 8 33 33 H 1.08004 * 125.20295 * 0.02562 * 16 15 12 34 34 H 1.08998 * 109.47149 * 240.04288 * 19 18 17 35 35 H 0.96701 * 113.99998 * 299.99777 * 20 19 18 36 36 H 1.48495 * 109.99885 * 58.68471 * 21 19 18 37 37 H 1.48505 * 109.99755 * 179.97438 * 21 19 18 38 38 H 1.07999 * 122.54011 * 180.02562 * 22 18 17 39 39 H 1.09003 * 109.46938 * 180.02562 * 23 9 8 40 40 H 1.08998 * 109.47467 * 60.00521 * 23 9 8 41 41 H 1.08998 * 109.47382 * 300.00720 * 24 23 9 42 42 H 1.09002 * 109.47055 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 1 1.7610 -0.1172 2.4042 7 6 1.5884 -2.1412 1.6871 8 6 1.9050 -2.7620 3.0491 9 6 3.4218 -2.8453 3.2314 10 1 3.6474 -3.2880 4.2016 11 7 3.9962 -3.6765 2.1706 12 16 4.2727 -5.2871 2.4387 13 8 4.7933 -5.8124 1.2253 14 8 4.9573 -5.3754 3.6808 15 6 2.7041 -6.0526 2.6797 16 6 2.1416 -6.1727 3.8832 17 16 0.5876 -6.9820 3.7299 18 6 0.7993 -7.1239 1.9897 19 6 -0.1846 -7.7629 1.0440 20 8 -0.6121 -6.7996 0.0789 21 14 -1.6587 -8.3772 2.0035 22 6 1.9646 -6.5800 1.6351 23 6 4.0221 -1.4399 3.1595 24 6 3.7056 -0.8191 1.7974 25 1 -0.3634 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 -0.3634 0.5969 0.8366 28 1 0.5078 -2.0818 1.5568 29 1 2.0161 -2.7597 0.8980 30 1 1.4777 -3.7634 3.1002 31 1 1.4777 -2.1435 3.8384 32 1 4.2145 -3.2835 1.3110 33 1 2.5735 -5.8243 4.8098 34 1 0.2922 -8.6004 0.5348 35 1 -1.0463 -6.0251 0.4619 36 1 -2.2989 -7.2500 2.7278 37 1 -2.6370 -9.0091 1.0820 38 1 2.3051 -6.5529 0.6105 39 1 5.1028 -1.4993 3.2890 40 1 3.5948 -0.8214 3.9489 41 1 4.1328 -1.4376 1.0081 42 1 4.1336 0.1820 1.7461 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14783812_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:37 Heat of formation + Delta-G solvation = -144.492846 kcal Electronic energy + Delta-G solvation = -30548.083154 eV Core-core repulsion = 26261.733828 eV Total energy + Delta-G solvation = -4286.349326 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.050 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.20831 -39.48341 -38.38576 -38.03665 -37.63974 -37.06601 -37.03076 -34.84985 -32.11021 -31.76370 -30.64947 -30.00692 -27.19061 -24.90118 -24.13605 -23.74186 -21.53257 -21.08626 -20.00816 -19.70787 -19.08162 -18.76117 -17.98027 -17.89101 -17.67367 -17.32302 -17.00741 -16.59682 -16.39136 -16.01214 -15.86831 -15.56628 -15.20968 -14.89007 -14.66933 -14.33498 -14.17915 -14.10295 -13.92905 -13.90104 -13.84143 -13.78591 -13.35370 -13.25390 -13.23005 -13.08559 -13.06151 -12.92180 -12.72654 -12.57502 -12.48182 -12.28345 -12.17433 -11.98810 -11.68576 -11.60507 -11.49897 -10.85923 -10.80576 -10.46299 -10.14044 -9.76510 -5.07513 -0.95525 -0.76993 -0.44262 0.38354 0.62425 1.00870 1.19710 1.49823 1.82798 1.86628 2.06936 2.68375 2.70601 3.02133 3.21790 3.34660 3.45385 3.54514 3.63913 3.80519 3.92645 3.96407 4.04424 4.07163 4.18260 4.22113 4.27444 4.37437 4.43352 4.49432 4.51006 4.68977 4.70614 4.81698 4.89144 4.95168 5.02666 5.04651 5.07162 5.14489 5.15622 5.26655 5.39721 5.98309 6.42006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.398 3.602 3 O -0.992 6.992 4 O -0.986 6.986 5 C -0.547 4.547 6 H 0.178 0.822 7 C -0.121 4.121 8 C -0.134 4.134 9 C 0.136 3.864 10 H 0.109 0.891 11 N -1.105 6.105 12 S 2.719 3.281 13 O -0.995 6.995 14 O -0.979 6.979 15 C -0.689 4.689 16 C -0.084 4.084 17 S 0.202 5.798 18 C -0.232 4.232 19 C -0.043 4.043 20 O -0.539 6.539 21 Si 0.720 3.280 22 C -0.055 4.055 23 C -0.110 4.110 24 C -0.122 4.122 25 H 0.128 0.872 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.423 0.577 33 H 0.207 0.793 34 H 0.130 0.870 35 H 0.389 0.611 36 H -0.248 1.248 37 H -0.278 1.278 38 H 0.144 0.856 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 0.437 8.612 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.588 3.412 3 O -0.989 6.989 4 O -0.983 6.983 5 C -0.659 4.659 6 H 0.196 0.804 7 C -0.160 4.160 8 C -0.174 4.174 9 C 0.030 3.970 10 H 0.127 0.873 11 N -0.868 5.868 12 S 2.809 3.191 13 O -0.985 6.985 14 O -0.969 6.969 15 C -0.791 4.791 16 C -0.223 4.223 17 S 0.466 5.534 18 C -0.349 4.349 19 C -0.155 4.155 20 O -0.347 6.347 21 Si 0.620 3.380 22 C -0.084 4.084 23 C -0.150 4.150 24 C -0.161 4.161 25 H 0.147 0.853 26 H 0.172 0.828 27 H 0.175 0.825 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.261 0.739 33 H 0.224 0.776 34 H 0.148 0.852 35 H 0.239 0.761 36 H -0.173 1.173 37 H -0.203 1.203 38 H 0.161 0.839 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.424 -0.525 8.815 12.204 hybrid contribution 0.205 1.328 -1.792 2.239 sum -8.219 0.803 7.023 10.841 Atomic orbital electron populations 1.30154 1.22382 1.13865 1.13263 1.08193 0.80100 0.74330 0.78560 1.93551 1.81009 1.36804 1.87515 1.93548 1.80810 1.67367 1.56596 1.30038 1.05311 1.09363 1.21145 0.80445 1.21615 1.02448 0.91491 1.00427 1.22112 0.94709 1.02841 0.97692 1.21207 0.93555 0.92240 0.90020 0.87269 1.55525 1.80331 1.25959 1.25005 1.00901 0.73350 0.72552 0.72334 1.93565 1.78487 1.78850 1.47606 1.93570 1.71064 1.86476 1.45826 1.29675 1.26597 1.23092 0.99717 1.26256 0.97814 0.97380 1.00838 1.84284 1.15510 1.52780 1.00800 1.25066 1.01504 1.09957 0.98410 1.24620 1.02819 0.94232 0.93780 1.86638 1.78998 1.34571 1.34516 0.94430 0.76866 0.84258 0.82403 1.19572 0.92562 0.96806 0.99419 1.21721 1.02135 0.94375 0.96767 1.21481 0.91118 1.03062 1.00419 0.85325 0.82799 0.82455 0.87375 0.90699 0.90305 0.87189 0.73942 0.77606 0.85247 0.76130 1.17290 1.20325 0.83871 0.90416 0.87407 0.91218 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.99 10.17 113.37 1.15 8.14 16 2 S 2.40 -5.97 4.88 -56.49 -0.28 -6.24 16 3 O -0.99 -6.77 18.10 -127.37 -2.31 -9.08 16 4 O -0.99 -6.61 17.91 -127.37 -2.28 -8.89 16 5 C -0.55 5.45 2.58 30.60 0.08 5.53 16 6 H 0.18 -3.06 8.14 -2.39 -0.02 -3.08 16 7 C -0.12 1.39 4.80 30.59 0.15 1.53 16 8 C -0.13 1.70 5.64 30.59 0.17 1.87 16 9 C 0.14 -1.20 3.12 44.99 0.14 -1.06 16 10 H 0.11 -1.14 7.50 -2.39 -0.02 -1.16 16 11 N -1.10 4.23 4.74 -169.39 -0.80 3.43 16 12 S 2.72 6.05 5.78 -56.49 -0.33 5.72 16 13 O -0.99 -10.70 17.63 -128.00 -2.26 -12.96 16 14 O -0.98 -6.36 16.97 -128.00 -2.17 -8.53 16 15 C -0.69 1.23 4.99 21.22 0.11 1.33 16 16 C -0.08 0.52 9.76 66.72 0.65 1.17 16 17 S 0.20 -1.47 20.58 -56.49 -1.16 -2.63 16 18 C -0.23 0.77 5.72 24.59 0.14 0.91 16 19 C -0.04 0.14 2.96 71.23 0.21 0.36 16 20 O -0.54 0.54 12.86 -148.98 -1.92 -1.38 16 21 Si 0.72 -3.67 30.97 68.60 2.12 -1.55 16 22 C -0.05 0.02 9.56 21.22 0.20 0.22 16 23 C -0.11 1.02 5.63 30.59 0.17 1.19 16 24 C -0.12 0.78 5.02 30.60 0.15 0.94 16 25 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 26 H 0.15 -2.39 6.87 -2.39 -0.02 -2.40 16 27 H 0.16 -2.53 8.14 -2.39 -0.02 -2.55 16 28 H 0.11 -1.86 6.56 -2.39 -0.02 -1.88 16 29 H 0.07 -0.59 7.36 -2.39 -0.02 -0.61 16 30 H 0.08 -1.01 6.19 -2.39 -0.01 -1.03 16 31 H 0.11 -1.90 8.14 -2.39 -0.02 -1.92 16 32 H 0.42 -1.76 6.81 -96.75 -0.66 -2.42 16 33 H 0.21 -2.25 8.00 -2.91 -0.02 -2.28 16 34 H 0.13 -0.48 7.96 -2.39 -0.02 -0.50 16 35 H 0.39 -3.15 8.70 -74.06 -0.64 -3.79 16 36 H -0.25 0.92 7.11 99.48 0.71 1.63 16 37 H -0.28 -0.64 7.11 99.48 0.71 0.07 16 38 H 0.14 0.29 7.97 -2.91 -0.02 0.27 16 39 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.11 -1.45 8.14 -2.39 -0.02 -1.47 16 41 H 0.07 -0.30 6.51 -2.39 -0.02 -0.32 16 42 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: 0.00 -37.49 372.00 -8.23 -45.73 By element: Atomic # 1 Polarization: -25.57 SS G_CDS: -0.19 Total: -25.76 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 3.33 Total: 22.13 kcal Atomic # 7 Polarization: 4.23 SS G_CDS: -0.80 Total: 3.43 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -10.93 Total: -40.83 kcal Atomic # 14 Polarization: -3.67 SS G_CDS: 2.12 Total: -1.55 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -1.76 Total: -3.15 kcal Total: -37.49 -8.23 -45.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14783812_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.766 kcal (2) G-P(sol) polarization free energy of solvation -37.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds