Wall clock time and date at job start Mon Mar 8 2021 08:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30278 * 126.27695 * 2 1 4 4 N 1.28670 * 109.37769 * 180.02562 * 3 2 1 5 5 C 1.30270 * 109.38463 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28729 * 179.97438 * 5 4 3 7 7 H 1.08997 * 112.84882 * 168.83107 * 6 5 4 8 8 C 1.53783 * 113.60901 * 300.02787 * 6 5 4 9 9 C 1.53789 * 87.16832 * 139.93765 * 8 6 5 10 10 H 1.08995 * 113.61467 * 89.15962 * 9 8 6 11 11 N 1.46503 * 113.60961 * 220.06020 * 9 8 6 12 12 S 1.65602 * 119.99342 * 215.30315 * 11 9 8 13 13 O 1.42108 * 106.40090 * 177.99893 * 12 11 9 14 14 O 1.42093 * 106.40660 * 310.91657 * 12 11 9 15 15 C 1.76194 * 107.22127 * 64.46139 * 12 11 9 16 16 C 1.38212 * 120.00428 * 63.50767 * 15 12 11 17 17 C 1.50701 * 119.99692 * 0.02562 * 16 15 12 18 18 O 1.42905 * 109.47522 * 75.58278 * 17 16 15 19 19 Si 1.86303 * 109.47076 * 195.58229 * 17 16 15 20 20 C 1.38256 * 120.00312 * 179.74421 * 16 15 12 21 21 C 1.38205 * 119.99781 * 0.55581 * 20 16 15 22 22 C 1.38258 * 120.00366 * 359.69685 * 21 20 16 23 23 C 1.38214 * 119.99546 * 0.02726 * 22 21 20 24 24 C 1.53783 * 113.61184 * 37.52120 * 6 5 4 25 25 O 1.34361 * 126.28742 * 180.28247 * 2 1 3 26 26 H 1.08998 * 109.46935 * 89.98128 * 1 2 3 27 27 H 1.09000 * 109.46925 * 209.97699 * 1 2 3 28 28 H 1.08990 * 109.47382 * 329.98062 * 1 2 3 29 29 H 1.09000 * 113.61244 * 254.52216 * 8 6 5 30 30 H 1.08997 * 113.61752 * 25.34875 * 8 6 5 31 31 H 0.96993 * 120.00215 * 35.29839 * 11 9 8 32 32 H 1.09002 * 109.47088 * 315.57923 * 17 16 15 33 33 H 0.96695 * 114.00015 * 184.97082 * 18 17 16 34 34 H 1.48505 * 109.99774 * 178.67974 * 19 17 16 35 35 H 1.48498 * 110.00152 * 299.99566 * 19 17 16 36 36 H 1.08004 * 119.99827 * 180.27362 * 20 16 15 37 37 H 1.08005 * 120.00370 * 179.72423 * 21 20 16 38 38 H 1.07993 * 120.00458 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.99580 * 179.97438 * 23 22 21 40 40 H 1.08994 * 113.61415 * 334.57289 * 24 6 5 41 41 H 1.09000 * 113.61035 * 105.38413 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0503 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5655 -0.6253 -0.0004 6 6 4.8177 -1.4636 -0.0014 7 1 4.6214 -2.5179 0.1936 8 6 5.7207 -1.2205 -1.2223 9 6 6.9171 -1.3162 -0.2608 10 1 7.2971 -2.3301 -0.1360 11 7 7.9743 -0.3414 -0.5408 12 16 9.5619 -0.7531 -0.3115 13 8 10.3303 0.3737 -0.7105 14 8 9.6437 -1.3300 0.9845 15 6 9.9371 -2.0409 -1.4539 16 6 9.8780 -1.7979 -2.8132 17 6 9.4932 -0.4311 -3.3182 18 8 10.5937 0.4653 -3.1525 19 14 9.0467 -0.5392 -5.1237 20 6 10.1776 -2.8069 -3.7096 21 6 10.5250 -4.0619 -3.2466 22 6 10.5791 -4.3066 -1.8869 23 6 10.2851 -3.2962 -0.9907 24 6 5.9521 -0.8775 0.8557 25 8 2.3022 -1.0830 -0.0053 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5141 29 1 5.6863 -2.0243 -1.9577 30 1 5.5963 -0.2336 -1.6677 31 1 7.7444 0.5449 -0.8607 32 1 8.6366 -0.0631 -2.7535 33 1 10.3930 1.3819 -3.3861 34 1 8.6346 0.7963 -5.6258 35 1 10.2063 -1.0397 -5.9046 36 1 10.1357 -2.6156 -4.7718 37 1 10.7548 -4.8514 -3.9468 38 1 10.8510 -5.2871 -1.5251 39 1 10.3270 -3.4875 0.0714 40 1 5.8920 0.2038 0.9791 41 1 6.1034 -1.4033 1.7984 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_14942248_2726874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:37 Heat of formation + Delta-G solvation = 7.464068 kcal Electronic energy + Delta-G solvation = -29470.930134 eV Core-core repulsion = 25255.318989 eV Total energy + Delta-G solvation = -4215.611145 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.097 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -45.21393 -40.72667 -40.51823 -38.33813 -37.45955 -37.13338 -36.72123 -34.90640 -33.48006 -32.96653 -32.44626 -29.61204 -27.06803 -26.98069 -26.59533 -24.44965 -23.81537 -23.32132 -22.71953 -21.25243 -20.52930 -19.20808 -18.63310 -18.49938 -18.37411 -18.24775 -17.51538 -17.11469 -16.86185 -16.55597 -15.98885 -15.78870 -15.58483 -15.27652 -15.12946 -14.97951 -14.63455 -14.21250 -14.10730 -13.88818 -13.85352 -13.73493 -13.63481 -13.55985 -13.35007 -13.20000 -12.94742 -12.84062 -12.81679 -12.51701 -12.38216 -12.23620 -12.11322 -12.00270 -11.82900 -11.61939 -10.76351 -10.50535 -10.43476 -10.37315 -10.11006 -5.10059 -0.64692 -0.28718 0.07636 0.12216 1.08257 1.20322 1.37842 1.47328 1.83114 1.91200 2.32785 2.72176 2.73723 3.08567 3.15112 3.20815 3.39217 3.40745 3.50518 3.53598 3.63497 3.74488 3.81490 3.84535 3.93957 4.01078 4.16999 4.20079 4.27460 4.27876 4.37267 4.47867 4.51109 4.51717 4.54394 4.60342 4.65148 4.71463 4.78205 4.80211 4.94023 5.08359 5.20656 5.21659 5.66019 5.78622 6.47093 7.32725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.288 5.288 4 N -0.282 5.282 5 C 0.174 3.826 6 C -0.024 4.024 7 H 0.129 0.871 8 C -0.131 4.131 9 C 0.134 3.866 10 H 0.123 0.877 11 N -1.104 6.104 12 S 2.685 3.315 13 O -0.929 6.929 14 O -0.956 6.956 15 C -0.657 4.657 16 C 0.032 3.968 17 C -0.110 4.110 18 O -0.503 6.503 19 Si 0.690 3.310 20 C -0.138 4.138 21 C -0.057 4.057 22 C -0.134 4.134 23 C -0.024 4.024 24 C -0.134 4.134 25 O -0.225 6.225 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.422 0.578 32 H 0.076 0.924 33 H 0.383 0.617 34 H -0.255 1.255 35 H -0.251 1.251 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.108 0.892 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 -6.234 -3.205 9.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 N -0.136 5.136 4 N -0.128 5.128 5 C -0.037 4.037 6 C -0.045 4.045 7 H 0.147 0.853 8 C -0.171 4.171 9 C 0.026 3.974 10 H 0.141 0.859 11 N -0.863 5.863 12 S 2.774 3.226 13 O -0.918 6.918 14 O -0.946 6.946 15 C -0.744 4.744 16 C 0.031 3.969 17 C -0.219 4.219 18 O -0.310 6.310 19 Si 0.590 3.410 20 C -0.156 4.156 21 C -0.076 4.076 22 C -0.152 4.152 23 C -0.043 4.043 24 C -0.174 4.174 25 O -0.105 6.105 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.258 0.742 32 H 0.094 0.906 33 H 0.232 0.768 34 H -0.180 1.180 35 H -0.176 1.176 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.126 0.874 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.894 -5.062 -3.159 7.717 hybrid contribution -0.166 -0.322 -0.335 0.493 sum -5.060 -5.384 -3.493 8.173 Atomic orbital electron populations 1.20399 0.80028 1.05937 1.05447 1.28092 0.97932 0.79526 0.99222 1.74455 0.95969 1.25522 1.17620 1.74322 1.12355 1.09019 1.17079 1.27696 0.84674 0.91618 0.99748 1.21056 0.84131 0.98525 1.00761 0.85347 1.23573 0.92678 1.04857 0.96006 1.22150 0.86517 0.92756 0.95999 0.85949 1.55672 1.23652 1.23277 1.83675 1.02335 0.72384 0.74099 0.73784 1.93698 1.66691 1.48515 1.82927 1.93599 1.85520 1.79479 1.35993 1.30794 1.17621 1.15778 1.10164 1.18817 0.93187 0.93338 0.91591 1.25176 0.93176 0.89902 1.13695 1.86754 1.34243 1.21359 1.88624 0.95269 0.86567 0.85623 0.73585 1.21267 1.00833 0.93572 0.99933 1.21481 0.93526 0.96454 0.96094 1.21401 1.00630 0.99882 0.93326 1.21072 0.91652 0.90549 1.01033 1.23659 0.91463 1.03835 0.98412 1.84788 1.17576 1.38445 1.69662 0.88130 0.88740 0.87362 0.88849 0.87850 0.74241 0.90644 0.76812 1.18004 1.17603 0.84581 0.84598 0.84541 0.83581 0.87403 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.21 10.51 36.01 0.38 0.59 16 2 C 0.16 0.18 8.48 -12.94 -0.11 0.07 16 3 N -0.29 -1.14 12.22 32.55 0.40 -0.75 16 4 N -0.28 -0.98 11.83 32.55 0.39 -0.59 16 5 C 0.17 0.16 7.53 -12.94 -0.10 0.06 16 6 C -0.02 0.07 4.29 -90.96 -0.39 -0.32 16 7 H 0.13 -0.64 8.14 -51.93 -0.42 -1.06 16 8 C -0.13 0.54 7.41 -25.91 -0.19 0.35 16 9 C 0.13 -0.44 4.36 -67.02 -0.29 -0.73 16 10 H 0.12 -0.59 8.05 -51.93 -0.42 -1.00 16 11 N -1.10 2.17 4.49 -4.12 -0.02 2.15 16 12 S 2.68 4.51 4.93 -107.50 -0.53 3.98 16 13 O -0.93 -4.38 15.03 -66.42 -1.00 -5.38 16 14 O -0.96 -3.95 16.74 -57.17 -0.96 -4.91 16 15 C -0.66 -0.65 5.87 -39.58 -0.23 -0.88 16 16 C 0.03 0.02 5.28 -104.62 -0.55 -0.53 16 17 C -0.11 0.03 1.84 36.01 0.07 0.09 16 18 O -0.50 -1.09 10.44 -57.75 -0.60 -1.69 16 19 Si 0.69 -1.06 30.31 -169.99 -5.15 -6.21 16 20 C -0.14 0.06 8.66 -39.59 -0.34 -0.28 16 21 C -0.06 0.08 10.05 -39.59 -0.40 -0.31 16 22 C -0.13 0.17 10.05 -39.58 -0.40 -0.23 16 23 C -0.02 0.00 9.55 -39.58 -0.38 -0.38 16 24 C -0.13 0.30 7.42 -25.83 -0.19 0.11 16 25 O -0.23 -0.28 10.87 5.38 0.06 -0.22 16 26 H 0.10 -0.48 8.14 -51.93 -0.42 -0.91 16 27 H 0.09 -0.47 8.14 -51.93 -0.42 -0.89 16 28 H 0.11 -0.44 8.14 -51.93 -0.42 -0.87 16 29 H 0.09 -0.55 8.14 -51.93 -0.42 -0.97 16 30 H 0.10 -0.36 8.09 -51.93 -0.42 -0.78 16 31 H 0.42 -1.45 8.62 -34.47 -0.30 -1.75 16 32 H 0.08 -0.20 5.79 -51.93 -0.30 -0.50 16 33 H 0.38 -0.54 8.86 45.56 0.40 -0.14 16 34 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 35 H -0.25 -0.30 6.72 56.52 0.38 0.08 16 36 H 0.14 -0.24 4.91 -52.48 -0.26 -0.49 16 37 H 0.14 -0.53 8.06 -52.48 -0.42 -0.96 16 38 H 0.14 -0.48 8.06 -52.49 -0.42 -0.90 16 39 H 0.15 -0.12 7.34 -52.48 -0.39 -0.51 16 40 H 0.11 -0.10 7.78 -51.93 -0.40 -0.50 16 41 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 LS Contribution 356.40 15.07 5.37 5.37 Total: 0.00 -13.37 356.40 -9.86 -23.22 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: -4.68 Total: -12.56 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.13 Total: -2.42 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: 0.76 Total: 0.81 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -2.50 Total: -12.20 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: -5.15 Total: -6.21 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -0.53 Total: 3.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -13.37 -9.86 -23.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14942248_2726874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.688 kcal (2) G-P(sol) polarization free energy of solvation -13.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds