Wall clock time and date at job start Mon Mar 8 2021 08:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30278 * 126.27695 * 2 1 4 4 N 1.28670 * 109.37769 * 180.02562 * 3 2 1 5 5 C 1.30270 * 109.38463 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28729 * 179.97438 * 5 4 3 7 7 H 1.08997 * 112.84882 * 168.83107 * 6 5 4 8 8 C 1.53783 * 113.60901 * 300.02787 * 6 5 4 9 9 C 1.53789 * 87.16832 * 139.93765 * 8 6 5 10 10 H 1.08995 * 113.61467 * 89.15962 * 9 8 6 11 11 N 1.46503 * 113.60961 * 220.06020 * 9 8 6 12 12 S 1.65602 * 119.99342 * 215.30315 * 11 9 8 13 13 O 1.42108 * 106.40090 * 177.99893 * 12 11 9 14 14 O 1.42093 * 106.40660 * 310.91657 * 12 11 9 15 15 C 1.76194 * 107.22127 * 64.46139 * 12 11 9 16 16 C 1.38212 * 120.00428 * 63.50767 * 15 12 11 17 17 C 1.50701 * 119.99692 * 0.02562 * 16 15 12 18 18 O 1.42905 * 109.47522 * 75.58278 * 17 16 15 19 19 Si 1.86303 * 109.47076 * 195.58229 * 17 16 15 20 20 C 1.38256 * 120.00312 * 179.74421 * 16 15 12 21 21 C 1.38205 * 119.99781 * 0.55581 * 20 16 15 22 22 C 1.38258 * 120.00366 * 359.69685 * 21 20 16 23 23 C 1.38214 * 119.99546 * 0.02726 * 22 21 20 24 24 C 1.53783 * 113.61184 * 37.52120 * 6 5 4 25 25 O 1.34361 * 126.28742 * 180.28247 * 2 1 3 26 26 H 1.08998 * 109.46935 * 89.98128 * 1 2 3 27 27 H 1.09000 * 109.46925 * 209.97699 * 1 2 3 28 28 H 1.08990 * 109.47382 * 329.98062 * 1 2 3 29 29 H 1.09000 * 113.61244 * 254.52216 * 8 6 5 30 30 H 1.08997 * 113.61752 * 25.34875 * 8 6 5 31 31 H 0.96993 * 120.00215 * 35.29839 * 11 9 8 32 32 H 1.09002 * 109.47088 * 315.57923 * 17 16 15 33 33 H 0.96695 * 114.00015 * 184.97082 * 18 17 16 34 34 H 1.48505 * 109.99774 * 178.67974 * 19 17 16 35 35 H 1.48498 * 110.00152 * 299.99566 * 19 17 16 36 36 H 1.08004 * 119.99827 * 180.27362 * 20 16 15 37 37 H 1.08005 * 120.00370 * 179.72423 * 21 20 16 38 38 H 1.07993 * 120.00458 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.99580 * 179.97438 * 23 22 21 40 40 H 1.08994 * 113.61415 * 334.57289 * 24 6 5 41 41 H 1.09000 * 113.61035 * 105.38413 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0503 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5655 -0.6253 -0.0004 6 6 4.8177 -1.4636 -0.0014 7 1 4.6214 -2.5179 0.1936 8 6 5.7207 -1.2205 -1.2223 9 6 6.9171 -1.3162 -0.2608 10 1 7.2971 -2.3301 -0.1360 11 7 7.9743 -0.3414 -0.5408 12 16 9.5619 -0.7531 -0.3115 13 8 10.3303 0.3737 -0.7105 14 8 9.6437 -1.3300 0.9845 15 6 9.9371 -2.0409 -1.4539 16 6 9.8780 -1.7979 -2.8132 17 6 9.4932 -0.4311 -3.3182 18 8 10.5937 0.4653 -3.1525 19 14 9.0467 -0.5392 -5.1237 20 6 10.1776 -2.8069 -3.7096 21 6 10.5250 -4.0619 -3.2466 22 6 10.5791 -4.3066 -1.8869 23 6 10.2851 -3.2962 -0.9907 24 6 5.9521 -0.8775 0.8557 25 8 2.3022 -1.0830 -0.0053 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5141 29 1 5.6863 -2.0243 -1.9577 30 1 5.5963 -0.2336 -1.6677 31 1 7.7444 0.5449 -0.8607 32 1 8.6366 -0.0631 -2.7535 33 1 10.3930 1.3819 -3.3861 34 1 8.6346 0.7963 -5.6258 35 1 10.2063 -1.0397 -5.9046 36 1 10.1357 -2.6156 -4.7718 37 1 10.7548 -4.8514 -3.9468 38 1 10.8510 -5.2871 -1.5251 39 1 10.3270 -3.4875 0.0714 40 1 5.8920 0.2038 0.9791 41 1 6.1034 -1.4033 1.7984 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_14942248_2726874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:36 Heat of formation + Delta-G solvation = -1.690426 kcal Electronic energy + Delta-G solvation = -29471.327103 eV Core-core repulsion = 25255.318989 eV Total energy + Delta-G solvation = -4216.008114 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.097 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.26609 -40.62581 -40.32911 -38.48922 -37.53079 -37.21473 -36.94157 -34.82396 -33.38329 -32.89418 -32.36782 -29.49663 -26.97728 -26.76021 -26.53561 -24.38050 -23.78693 -23.30836 -22.65422 -21.09324 -20.52626 -19.17594 -18.66749 -18.50941 -18.38820 -18.28840 -17.50742 -17.03752 -16.80434 -16.33584 -16.01767 -15.79670 -15.50895 -15.19522 -15.06286 -14.91337 -14.41366 -14.10719 -13.90511 -13.88294 -13.67140 -13.57242 -13.54547 -13.50953 -13.40343 -13.23472 -13.11384 -13.06637 -12.92350 -12.34913 -12.23584 -12.20269 -12.05401 -11.91031 -11.79359 -11.59052 -10.66515 -10.43364 -10.42220 -10.32525 -10.03375 -4.99761 -0.70138 -0.25675 0.11883 0.15548 1.17154 1.25682 1.30173 1.55698 1.89514 1.94069 2.40204 2.67991 2.82724 3.23334 3.28034 3.35583 3.44059 3.55676 3.71480 3.71641 3.78177 3.87139 3.90985 4.01538 4.11081 4.15012 4.32614 4.35243 4.38685 4.55292 4.56698 4.61416 4.64524 4.71929 4.77376 4.78073 4.81871 4.96292 5.01994 5.03370 5.04631 5.21319 5.32822 5.43866 5.78388 5.95969 6.57794 7.26016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.167 3.833 3 N -0.334 5.334 4 N -0.317 5.317 5 C 0.178 3.822 6 C -0.022 4.022 7 H 0.157 0.843 8 C -0.122 4.122 9 C 0.132 3.868 10 H 0.142 0.858 11 N -1.094 6.094 12 S 2.695 3.305 13 O -0.967 6.967 14 O -0.987 6.987 15 C -0.665 4.665 16 C 0.018 3.982 17 C -0.131 4.131 18 O -0.532 6.532 19 Si 0.780 3.220 20 C -0.148 4.148 21 C -0.055 4.055 22 C -0.133 4.133 23 C -0.037 4.037 24 C -0.142 4.142 25 O -0.230 6.230 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.428 0.572 32 H 0.095 0.905 33 H 0.393 0.607 34 H -0.285 1.285 35 H -0.288 1.288 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 -8.512 -4.151 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 N -0.181 5.181 4 N -0.162 5.162 5 C -0.034 4.034 6 C -0.043 4.043 7 H 0.175 0.825 8 C -0.162 4.162 9 C 0.024 3.976 10 H 0.160 0.840 11 N -0.855 5.855 12 S 2.787 3.213 13 O -0.957 6.957 14 O -0.977 6.977 15 C -0.753 4.753 16 C 0.016 3.984 17 C -0.239 4.239 18 O -0.341 6.341 19 Si 0.684 3.316 20 C -0.166 4.166 21 C -0.073 4.073 22 C -0.152 4.152 23 C -0.056 4.056 24 C -0.182 4.182 25 O -0.110 6.110 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.114 0.886 31 H 0.265 0.735 32 H 0.112 0.888 33 H 0.243 0.757 34 H -0.212 1.212 35 H -0.215 1.215 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.167 0.833 40 H 0.107 0.893 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.850 -7.300 -4.065 10.200 hybrid contribution 0.116 0.358 -0.043 0.379 sum -5.734 -6.942 -4.108 9.897 Atomic orbital electron populations 1.20681 0.77096 1.07121 1.06851 1.28934 0.99301 0.78935 0.97259 1.74377 0.96639 1.27197 1.19879 1.74236 1.12615 1.10547 1.18832 1.28374 0.85497 0.91363 0.98123 1.21373 0.82384 0.99274 1.01252 0.82527 1.23564 0.91100 1.05539 0.95964 1.22388 0.86134 0.93154 0.95887 0.84032 1.55395 1.22606 1.23991 1.83544 1.01645 0.72777 0.73562 0.73322 1.93645 1.68374 1.50274 1.83375 1.93552 1.86271 1.79899 1.38011 1.30564 1.19051 1.15689 1.10043 1.18989 0.93809 0.93910 0.91657 1.25580 0.93211 0.89536 1.15561 1.86706 1.35772 1.22460 1.89165 0.94337 0.83878 0.82830 0.70578 1.21499 1.00833 0.93918 1.00330 1.21856 0.92150 0.96667 0.96583 1.21720 0.99684 1.00507 0.93297 1.21270 0.91989 0.90687 1.01661 1.23681 0.92429 1.02866 0.99193 1.84809 1.17755 1.38525 1.69923 0.86426 0.86816 0.86818 0.86024 0.88628 0.73472 0.88775 0.75659 1.21230 1.21520 0.83603 0.81835 0.82150 0.83297 0.89286 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.46 10.51 71.24 0.75 1.21 16 2 C 0.17 0.42 8.48 88.34 0.75 1.17 16 3 N -0.33 -3.13 12.22 -165.50 -2.02 -5.15 16 4 N -0.32 -2.67 11.83 -165.50 -1.96 -4.63 16 5 C 0.18 0.39 7.53 88.34 0.67 1.05 16 6 C -0.02 0.14 4.29 -11.01 -0.05 0.09 16 7 H 0.16 -1.88 8.14 -2.39 -0.02 -1.90 16 8 C -0.12 1.12 7.41 31.12 0.23 1.35 16 9 C 0.13 -0.91 4.36 45.58 0.20 -0.71 16 10 H 0.14 -1.51 8.05 -2.39 -0.02 -1.53 16 11 N -1.09 3.49 4.49 -166.95 -0.75 2.74 16 12 S 2.70 12.48 4.93 -56.49 -0.28 12.20 16 13 O -0.97 -11.10 15.03 -119.16 -1.79 -12.90 16 14 O -0.99 -9.59 16.74 -128.00 -2.14 -11.73 16 15 C -0.67 -1.49 5.87 22.27 0.13 -1.36 16 16 C 0.02 0.02 5.28 -19.87 -0.10 -0.08 16 17 C -0.13 0.01 1.84 71.24 0.13 0.14 16 18 O -0.53 -3.03 10.44 -127.45 -1.33 -4.36 16 19 Si 0.78 -2.48 30.31 68.60 2.08 -0.40 16 20 C -0.15 0.26 8.66 22.27 0.19 0.46 16 21 C -0.05 0.26 10.05 22.27 0.22 0.49 16 22 C -0.13 0.54 10.05 22.27 0.22 0.77 16 23 C -0.04 0.00 9.55 22.27 0.21 0.22 16 24 C -0.14 0.58 7.42 31.18 0.23 0.81 16 25 O -0.23 -0.55 10.87 -3.66 -0.04 -0.59 16 26 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 27 H 0.11 -1.29 8.14 -2.39 -0.02 -1.31 16 28 H 0.11 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H 0.12 -1.76 8.14 -2.39 -0.02 -1.78 16 30 H 0.10 -0.68 8.09 -2.39 -0.02 -0.70 16 31 H 0.43 -2.44 8.62 -96.75 -0.83 -3.27 16 32 H 0.09 -0.46 5.79 -2.39 -0.01 -0.48 16 33 H 0.39 -0.45 8.86 -74.06 -0.66 -1.10 16 34 H -0.29 -0.43 7.11 99.48 0.71 0.27 16 35 H -0.29 -0.78 6.72 99.48 0.67 -0.11 16 36 H 0.15 -0.64 4.91 -2.91 -0.01 -0.66 16 37 H 0.16 -1.76 8.06 -2.91 -0.02 -1.78 16 38 H 0.16 -1.50 8.06 -2.91 -0.02 -1.52 16 39 H 0.15 -0.21 7.34 -2.91 -0.02 -0.23 16 40 H 0.09 0.00 7.78 -2.39 -0.02 -0.02 16 41 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: 0.00 -33.28 356.40 -4.83 -38.11 By element: Atomic # 1 Polarization: -18.51 SS G_CDS: -0.38 Total: -18.90 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 3.79 Total: 5.60 kcal Atomic # 7 Polarization: -2.31 SS G_CDS: -4.73 Total: -7.04 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -5.30 Total: -29.57 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 2.08 Total: -0.40 kcal Atomic # 16 Polarization: 12.48 SS G_CDS: -0.28 Total: 12.20 kcal Total: -33.28 -4.83 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_14942248_2726874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.420 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds