Wall clock time and date at job start Mon Mar 8 2021 12:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46918 * 2 1 4 4 C 1.52998 * 109.47208 * 240.00100 * 2 1 3 5 5 Si 1.86298 * 109.47205 * 119.99852 * 2 1 3 6 6 C 1.86304 * 109.46876 * 303.78328 * 5 2 1 7 7 C 1.86293 * 109.47123 * 183.78357 * 5 2 1 8 8 O 1.63103 * 109.47195 * 63.78170 * 5 2 1 9 9 C 1.35989 * 113.99943 * 185.86772 * 8 5 2 10 10 C 1.38531 * 120.07100 * 275.28489 * 9 8 5 11 11 C 1.38286 * 119.99454 * 180.27992 * 10 9 8 12 12 C 1.38209 * 120.14995 * 359.71674 * 11 10 9 13 13 C 1.38286 * 120.14524 * 359.97438 * 12 11 10 14 14 C 1.38525 * 119.99932 * 0.02562 * 13 12 11 15 15 O 1.35988 * 120.07176 * 180.02562 * 14 13 12 16 16 S 1.52197 * 114.00064 * 272.18011 * 15 14 13 17 17 O 1.42098 * 106.40515 * 188.75200 * 16 15 14 18 18 O 1.42098 * 106.40242 * 321.67052 * 16 15 14 19 19 C 1.76205 * 107.22068 * 75.21282 * 16 15 14 20 20 C 1.33384 * 122.53996 * 82.92968 * 19 16 15 21 21 S 1.75880 * 109.59174 * 180.02562 * 20 19 16 22 22 C 1.75880 * 90.97362 * 0.02562 * 21 20 19 23 23 C 1.50703 * 125.20655 * 179.97438 * 22 21 20 24 24 O 1.42898 * 109.46653 * 113.50167 * 23 22 21 25 25 Si 1.86296 * 109.46782 * 353.50200 * 23 22 21 26 26 H 1.48505 * 109.47152 * 175.77380 * 25 23 22 27 27 H 1.48503 * 109.47394 * 295.77380 * 25 23 22 28 28 H 1.48502 * 109.47438 * 55.77886 * 25 23 22 29 29 C 1.33394 * 109.59172 * 359.73040 * 22 21 20 30 30 H 1.08999 * 109.47504 * 304.76990 * 1 2 3 31 31 H 1.09010 * 109.47301 * 64.77181 * 1 2 3 32 32 H 1.08999 * 109.47064 * 184.76336 * 1 2 3 33 33 H 1.08996 * 109.46936 * 184.39350 * 3 2 1 34 34 H 1.08994 * 109.46859 * 304.39260 * 3 2 1 35 35 H 1.08996 * 109.47216 * 64.39237 * 3 2 1 36 36 H 1.09000 * 109.47205 * 299.99350 * 4 2 1 37 37 H 1.09003 * 109.47282 * 60.00015 * 4 2 1 38 38 H 1.09003 * 109.47204 * 180.02562 * 4 2 1 39 39 H 1.09005 * 109.46925 * 183.92796 * 6 5 2 40 40 H 1.08997 * 109.47275 * 303.92579 * 6 5 2 41 41 H 1.09000 * 109.47415 * 63.92999 * 6 5 2 42 42 H 1.09000 * 109.47396 * 301.91551 * 7 5 2 43 43 H 1.09003 * 109.47306 * 61.91809 * 7 5 2 44 44 H 1.09002 * 109.47391 * 181.91447 * 7 5 2 45 45 H 1.07998 * 119.99829 * 359.97438 * 10 9 8 46 46 H 1.08003 * 119.92377 * 179.74324 * 11 10 9 47 47 H 1.08004 * 119.92590 * 180.02562 * 12 11 10 48 48 H 1.07996 * 120.00078 * 179.97438 * 13 12 11 49 49 H 1.08001 * 125.20373 * 0.03324 * 20 19 16 50 50 H 1.08996 * 109.47106 * 233.50179 * 23 22 21 51 51 H 0.96704 * 113.99536 * 180.02562 * 24 23 22 52 52 H 1.08003 * 122.54258 * 180.23205 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.4371 -0.0693 3.0400 7 6 4.0103 -0.7784 1.5802 8 8 1.6917 -2.4424 1.4714 9 6 1.9885 -3.1421 2.5991 10 6 3.2445 -3.7050 2.7563 11 6 3.5427 -4.4211 3.9011 12 6 2.5921 -4.5721 4.8929 13 6 1.3385 -4.0073 4.7450 14 6 1.0332 -3.2887 3.6008 15 8 -0.1989 -2.7322 3.4541 16 16 -1.2269 -3.6615 2.8247 17 8 -2.3757 -2.8682 2.5594 18 8 -0.5415 -4.3969 1.8205 19 6 -1.7012 -4.8267 4.0584 20 6 -2.6269 -4.5585 4.9806 21 16 -2.8310 -5.9521 6.0340 22 6 -1.6111 -6.8467 5.1368 23 6 -1.1656 -8.2536 5.4422 24 8 -1.5568 -9.1193 4.3748 25 14 -1.9584 -8.8255 7.0281 26 1 -1.6013 -10.2455 7.2761 27 1 -1.4720 -7.9888 8.1545 28 1 -3.4338 -8.6982 6.9180 29 6 -1.1444 -6.0913 4.1413 30 1 -0.3634 0.5860 0.8441 31 1 -0.3634 0.4380 -0.9297 32 1 -0.3633 -1.0241 0.0853 33 1 3.1270 1.4436 -0.0787 34 1 1.6137 1.9786 -0.8480 35 1 1.7423 1.9332 0.9267 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 1.8545 -0.5379 3.9313 40 1 1.6856 0.9920 3.0373 41 1 0.3537 -0.1888 3.0402 42 1 4.4269 -1.2213 0.6755 43 1 4.3162 0.2656 1.6478 44 1 4.3758 -1.3212 2.4519 45 1 3.9890 -3.5888 1.9827 46 1 4.5209 -4.8631 4.0207 47 1 2.8290 -5.1318 5.7857 48 1 0.5973 -4.1271 5.5213 49 1 -3.1683 -3.6281 5.0671 50 1 -0.0811 -8.2761 5.5494 51 1 -1.3023 -10.0432 4.5044 52 1 -0.3869 -6.4387 3.4544 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15065180_15065232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:53:49 Heat of formation + Delta-G solvation = -155.029433 kcal Electronic energy + Delta-G solvation = -37787.816428 eV Core-core repulsion = 33096.162482 eV Total energy + Delta-G solvation = -4691.653946 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 430.099 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.41761 -39.66499 -39.45693 -38.20707 -37.88715 -37.61562 -36.88020 -36.86684 -32.04621 -31.83573 -30.73547 -29.35138 -29.10535 -27.88804 -27.40412 -27.25203 -25.13256 -24.60105 -23.91760 -21.76892 -21.00818 -20.50777 -19.46899 -19.23863 -18.95879 -18.61496 -18.35685 -17.99908 -17.30461 -16.91452 -16.48573 -16.22624 -16.01899 -15.79648 -15.41179 -15.22010 -14.99866 -14.89794 -14.75045 -14.71832 -14.42931 -14.17962 -14.11215 -14.06657 -13.89488 -13.81980 -13.47934 -13.36778 -13.27911 -13.19605 -13.08071 -12.97457 -12.95699 -12.92831 -12.90668 -12.88354 -12.65283 -12.51475 -12.42424 -12.25073 -12.22502 -12.07703 -11.68600 -11.64126 -11.56922 -10.61567 -10.59486 -10.24961 -10.18600 -10.14466 -9.86972 -9.65154 -0.97805 -0.53864 -0.04416 -0.01352 0.26800 0.50004 0.85143 1.00111 1.15918 1.26240 1.30213 1.56189 1.57217 1.72497 1.89982 2.22574 2.44685 2.65532 3.13832 3.25482 3.45565 3.60586 3.70250 3.80066 3.82490 4.03538 4.04852 4.09242 4.10707 4.12071 4.20396 4.29124 4.46157 4.61965 4.62826 4.64414 4.74789 4.77365 4.81229 4.83918 4.85925 4.88764 4.90556 4.99569 5.03578 5.05680 5.09838 5.10858 5.13403 5.20452 5.24556 5.32897 5.42500 5.47675 5.49978 5.62383 5.82156 6.41083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.370 4.370 3 C -0.136 4.136 4 C -0.138 4.138 5 Si 1.261 2.739 6 C -0.503 4.503 7 C -0.502 4.502 8 O -0.550 6.550 9 C 0.167 3.833 10 C -0.151 4.151 11 C -0.072 4.072 12 C -0.122 4.122 13 C -0.096 4.096 14 C 0.028 3.972 15 O -0.650 6.650 16 S 2.683 3.317 17 O -0.926 6.926 18 O -0.929 6.929 19 C -0.711 4.711 20 C -0.078 4.078 21 S 0.155 5.845 22 C -0.185 4.185 23 C -0.040 4.040 24 O -0.540 6.540 25 Si 0.889 3.111 26 H -0.227 1.227 27 H -0.234 1.234 28 H -0.229 1.229 29 C -0.037 4.037 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.188 0.812 50 H 0.090 0.910 51 H 0.384 0.616 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 -2.174 5.619 8.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.414 4.414 3 C -0.193 4.193 4 C -0.195 4.195 5 Si 1.397 2.603 6 C -0.607 4.607 7 C -0.606 4.606 8 O -0.503 6.503 9 C 0.121 3.879 10 C -0.169 4.169 11 C -0.091 4.091 12 C -0.141 4.141 13 C -0.116 4.116 14 C -0.014 4.014 15 O -0.609 6.609 16 S 2.772 3.228 17 O -0.924 6.924 18 O -0.928 6.928 19 C -0.808 4.808 20 C -0.217 4.217 21 S 0.419 5.581 22 C -0.302 4.302 23 C -0.153 4.153 24 O -0.347 6.347 25 Si 0.708 3.292 26 H -0.149 1.149 27 H -0.157 1.157 28 H -0.152 1.152 29 C -0.066 4.066 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.167 0.833 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.161 0.839 49 H 0.205 0.795 50 H 0.107 0.893 51 H 0.232 0.768 52 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.643 -1.921 6.707 7.871 hybrid contribution 0.793 -0.084 -0.859 1.172 sum 4.436 -2.006 5.848 7.609 Atomic orbital electron populations 1.21587 0.93546 1.02094 1.02527 1.25698 1.00877 1.02797 1.12068 1.21557 1.00936 0.94531 1.02314 1.21557 1.00664 1.00504 0.96740 0.77436 0.64955 0.51466 0.66425 1.26930 1.08443 1.08506 1.16790 1.26946 1.23271 1.05364 1.04992 1.83864 1.83391 1.45274 1.37792 1.18088 0.91963 0.94439 0.83460 1.21401 0.95336 1.00386 0.99806 1.21314 1.00003 0.95512 0.92241 1.21070 0.92105 1.00547 1.00342 1.21293 0.98902 0.95932 0.95495 1.18151 0.82287 1.04077 0.96933 1.85743 1.29273 1.59458 1.86403 1.02565 0.73860 0.72985 0.73384 1.93640 1.48202 1.67978 1.82630 1.93664 1.71576 1.72791 1.54738 1.30275 1.12850 1.15417 1.22300 1.25886 0.97217 1.03135 0.95438 1.84472 1.36814 1.05740 1.31042 1.23818 1.03624 0.99662 1.03084 1.23974 1.02978 0.87679 1.00696 1.86547 1.82496 1.21980 1.43630 0.86377 0.82783 0.83773 0.76276 1.14902 1.15663 1.15151 1.19617 0.99938 0.90014 0.96990 0.92195 0.92098 0.92481 0.92289 0.92116 0.92451 0.91917 0.92351 0.92521 0.91000 0.90290 0.90066 0.90463 0.90111 0.90836 0.83306 0.83988 0.83970 0.83867 0.79489 0.89253 0.76759 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.29 7.86 37.16 0.29 0.01 16 2 C -0.37 -0.35 0.53 -90.62 -0.05 -0.40 16 3 C -0.14 0.02 7.86 37.16 0.29 0.31 16 4 C -0.14 -0.13 7.85 37.16 0.29 0.17 16 5 Si 1.26 0.77 8.14 -169.99 -1.38 -0.62 16 6 C -0.50 -0.49 7.95 101.05 0.80 0.32 16 7 C -0.50 0.42 8.25 101.05 0.83 1.25 16 8 O -0.55 -1.57 8.16 -34.53 -0.28 -1.86 16 9 C 0.17 0.34 4.02 -39.12 -0.16 0.19 16 10 C -0.15 0.08 8.43 -39.46 -0.33 -0.26 16 11 C -0.07 0.18 10.04 -39.57 -0.40 -0.22 16 12 C -0.12 0.31 10.04 -39.57 -0.40 -0.09 16 13 C -0.10 0.07 8.83 -39.46 -0.35 -0.28 16 14 C 0.03 0.05 4.24 -39.12 -0.17 -0.11 16 15 O -0.65 -1.92 9.19 -54.07 -0.50 -2.42 16 16 S 2.68 11.75 5.48 -107.50 -0.59 11.16 16 17 O -0.93 -6.18 17.75 -66.81 -1.19 -7.37 16 18 O -0.93 -5.82 15.75 -66.88 -1.05 -6.88 16 19 C -0.71 -1.62 4.87 -41.21 -0.20 -1.82 16 20 C -0.08 -0.07 10.76 29.04 0.31 0.25 16 21 S 0.16 0.06 20.61 -107.50 -2.22 -2.16 16 22 C -0.18 -0.17 5.73 -36.00 -0.21 -0.38 16 23 C -0.04 0.05 2.95 36.01 0.11 0.15 16 24 O -0.54 0.17 12.86 -35.23 -0.45 -0.29 16 25 Si 0.89 -1.32 26.27 -169.99 -4.47 -5.78 16 26 H -0.23 0.43 7.11 56.52 0.40 0.83 16 27 H -0.23 0.31 7.11 56.52 0.40 0.71 16 28 H -0.23 -0.02 7.11 56.52 0.40 0.38 16 29 C -0.04 -0.07 9.10 -41.21 -0.37 -0.44 16 30 H 0.06 0.08 8.06 -51.93 -0.42 -0.34 16 31 H 0.06 0.10 8.14 -51.92 -0.42 -0.33 16 32 H 0.06 0.17 7.85 -51.93 -0.41 -0.24 16 33 H 0.06 -0.07 8.06 -51.93 -0.42 -0.49 16 34 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.06 -0.05 7.53 -51.93 -0.39 -0.44 16 36 H 0.06 0.10 7.97 -51.93 -0.41 -0.32 16 37 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.06 -0.02 7.87 -51.93 -0.41 -0.43 16 39 H 0.07 0.05 7.92 -51.93 -0.41 -0.36 16 40 H 0.08 -0.02 7.63 -51.93 -0.40 -0.41 16 41 H 0.08 0.15 7.63 -51.93 -0.40 -0.24 16 42 H 0.08 -0.09 7.86 -51.93 -0.41 -0.50 16 43 H 0.08 -0.11 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.10 6.99 -51.93 -0.36 -0.47 16 45 H 0.15 -0.34 7.79 -52.49 -0.41 -0.75 16 46 H 0.14 -0.73 8.06 -52.48 -0.42 -1.15 16 47 H 0.14 -0.74 8.06 -52.48 -0.42 -1.16 16 48 H 0.14 -0.36 7.78 -52.49 -0.41 -0.77 16 49 H 0.19 -0.26 8.06 -52.49 -0.42 -0.68 16 50 H 0.09 -0.33 7.96 -51.93 -0.41 -0.74 16 51 H 0.38 -1.92 8.74 45.56 0.40 -1.52 16 52 H 0.16 0.23 7.85 -52.48 -0.41 -0.18 16 LS Contribution 446.84 15.07 6.73 6.73 Total: 0.00 -9.25 446.84 -12.51 -21.76 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: -7.42 Total: -10.92 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.30 Total: -1.36 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -3.47 Total: -18.81 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.85 Total: -6.40 kcal Atomic # 16 Polarization: 11.80 SS G_CDS: -2.80 Total: 9.00 kcal Total LS contribution 6.73 Total: 6.73 kcal Total: -9.25 -12.51 -21.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15065180_15065232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.267 kcal (2) G-P(sol) polarization free energy of solvation -9.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds