Wall clock time and date at job start Mon Mar 8 2021 12:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46918 * 2 1 4 4 C 1.52998 * 109.47208 * 240.00100 * 2 1 3 5 5 Si 1.86298 * 109.47205 * 119.99852 * 2 1 3 6 6 C 1.86304 * 109.46876 * 303.78328 * 5 2 1 7 7 C 1.86293 * 109.47123 * 183.78357 * 5 2 1 8 8 O 1.63103 * 109.47195 * 63.78170 * 5 2 1 9 9 C 1.35989 * 113.99943 * 185.86772 * 8 5 2 10 10 C 1.38531 * 120.07100 * 275.28489 * 9 8 5 11 11 C 1.38286 * 119.99454 * 180.27992 * 10 9 8 12 12 C 1.38209 * 120.14995 * 359.71674 * 11 10 9 13 13 C 1.38286 * 120.14524 * 359.97438 * 12 11 10 14 14 C 1.38525 * 119.99932 * 0.02562 * 13 12 11 15 15 O 1.35988 * 120.07176 * 180.02562 * 14 13 12 16 16 S 1.52197 * 114.00064 * 272.18011 * 15 14 13 17 17 O 1.42098 * 106.40515 * 188.75200 * 16 15 14 18 18 O 1.42098 * 106.40242 * 321.67052 * 16 15 14 19 19 C 1.76205 * 107.22068 * 75.21282 * 16 15 14 20 20 C 1.33384 * 122.53996 * 82.92968 * 19 16 15 21 21 S 1.75880 * 109.59174 * 180.02562 * 20 19 16 22 22 C 1.75880 * 90.97362 * 0.02562 * 21 20 19 23 23 C 1.50703 * 125.20655 * 179.97438 * 22 21 20 24 24 O 1.42898 * 109.46653 * 113.50167 * 23 22 21 25 25 Si 1.86296 * 109.46782 * 353.50200 * 23 22 21 26 26 H 1.48505 * 109.47152 * 175.77380 * 25 23 22 27 27 H 1.48503 * 109.47394 * 295.77380 * 25 23 22 28 28 H 1.48502 * 109.47438 * 55.77886 * 25 23 22 29 29 C 1.33394 * 109.59172 * 359.73040 * 22 21 20 30 30 H 1.08999 * 109.47504 * 304.76990 * 1 2 3 31 31 H 1.09010 * 109.47301 * 64.77181 * 1 2 3 32 32 H 1.08999 * 109.47064 * 184.76336 * 1 2 3 33 33 H 1.08996 * 109.46936 * 184.39350 * 3 2 1 34 34 H 1.08994 * 109.46859 * 304.39260 * 3 2 1 35 35 H 1.08996 * 109.47216 * 64.39237 * 3 2 1 36 36 H 1.09000 * 109.47205 * 299.99350 * 4 2 1 37 37 H 1.09003 * 109.47282 * 60.00015 * 4 2 1 38 38 H 1.09003 * 109.47204 * 180.02562 * 4 2 1 39 39 H 1.09005 * 109.46925 * 183.92796 * 6 5 2 40 40 H 1.08997 * 109.47275 * 303.92579 * 6 5 2 41 41 H 1.09000 * 109.47415 * 63.92999 * 6 5 2 42 42 H 1.09000 * 109.47396 * 301.91551 * 7 5 2 43 43 H 1.09003 * 109.47306 * 61.91809 * 7 5 2 44 44 H 1.09002 * 109.47391 * 181.91447 * 7 5 2 45 45 H 1.07998 * 119.99829 * 359.97438 * 10 9 8 46 46 H 1.08003 * 119.92377 * 179.74324 * 11 10 9 47 47 H 1.08004 * 119.92590 * 180.02562 * 12 11 10 48 48 H 1.07996 * 120.00078 * 179.97438 * 13 12 11 49 49 H 1.08001 * 125.20373 * 0.03324 * 20 19 16 50 50 H 1.08996 * 109.47106 * 233.50179 * 23 22 21 51 51 H 0.96704 * 113.99536 * 180.02562 * 24 23 22 52 52 H 1.08003 * 122.54258 * 180.23205 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.4371 -0.0693 3.0400 7 6 4.0103 -0.7784 1.5802 8 8 1.6917 -2.4424 1.4714 9 6 1.9885 -3.1421 2.5991 10 6 3.2445 -3.7050 2.7563 11 6 3.5427 -4.4211 3.9011 12 6 2.5921 -4.5721 4.8929 13 6 1.3385 -4.0073 4.7450 14 6 1.0332 -3.2887 3.6008 15 8 -0.1989 -2.7322 3.4541 16 16 -1.2269 -3.6615 2.8247 17 8 -2.3757 -2.8682 2.5594 18 8 -0.5415 -4.3969 1.8205 19 6 -1.7012 -4.8267 4.0584 20 6 -2.6269 -4.5585 4.9806 21 16 -2.8310 -5.9521 6.0340 22 6 -1.6111 -6.8467 5.1368 23 6 -1.1656 -8.2536 5.4422 24 8 -1.5568 -9.1193 4.3748 25 14 -1.9584 -8.8255 7.0281 26 1 -1.6013 -10.2455 7.2761 27 1 -1.4720 -7.9888 8.1545 28 1 -3.4338 -8.6982 6.9180 29 6 -1.1444 -6.0913 4.1413 30 1 -0.3634 0.5860 0.8441 31 1 -0.3634 0.4380 -0.9297 32 1 -0.3633 -1.0241 0.0853 33 1 3.1270 1.4436 -0.0787 34 1 1.6137 1.9786 -0.8480 35 1 1.7423 1.9332 0.9267 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 1.8545 -0.5379 3.9313 40 1 1.6856 0.9920 3.0373 41 1 0.3537 -0.1888 3.0402 42 1 4.4269 -1.2213 0.6755 43 1 4.3162 0.2656 1.6478 44 1 4.3758 -1.3212 2.4519 45 1 3.9890 -3.5888 1.9827 46 1 4.5209 -4.8631 4.0207 47 1 2.8290 -5.1318 5.7857 48 1 0.5973 -4.1271 5.5213 49 1 -3.1683 -3.6281 5.0671 50 1 -0.0811 -8.2761 5.5494 51 1 -1.3023 -10.0432 4.5044 52 1 -0.3869 -6.4387 3.4544 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15065180_15065232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:53:48 Heat of formation + Delta-G solvation = -151.717254 kcal Electronic energy + Delta-G solvation = -37787.672801 eV Core-core repulsion = 33096.162482 eV Total energy + Delta-G solvation = -4691.510319 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 430.099 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.46006 -39.70115 -39.50138 -38.58820 -37.83059 -37.55783 -37.24973 -36.94865 -32.06270 -31.73209 -30.66186 -29.33752 -29.15514 -27.90858 -27.49154 -27.25356 -25.20597 -24.59639 -23.83844 -21.85334 -21.06853 -20.57004 -19.54758 -19.30606 -19.14944 -18.52042 -18.45195 -18.05172 -17.34766 -16.87522 -16.43944 -16.31873 -16.06224 -15.77101 -15.48094 -15.17521 -14.98734 -14.90352 -14.85616 -14.72498 -14.49116 -14.25756 -14.17305 -14.13642 -14.01123 -13.79728 -13.50066 -13.47014 -13.40262 -13.31725 -13.23457 -13.19173 -13.04688 -12.97503 -12.92907 -12.77683 -12.68277 -12.48431 -12.46148 -12.21887 -12.13318 -12.01773 -11.75437 -11.72011 -11.63350 -10.61321 -10.52936 -10.23442 -10.19362 -10.10418 -9.91509 -9.58510 -1.16929 -0.62891 -0.01153 0.09832 0.23913 0.45922 0.79659 1.06798 1.17868 1.36632 1.42865 1.46534 1.53747 1.85697 1.92686 2.25316 2.39147 2.53648 2.96422 3.32272 3.50754 3.69104 3.79282 3.86990 3.98410 4.00399 4.02178 4.07821 4.20345 4.24022 4.32567 4.38788 4.43507 4.57161 4.67477 4.68512 4.71129 4.75855 4.76832 4.78152 4.82693 4.90167 4.92909 4.96279 5.01192 5.02840 5.04824 5.11204 5.20046 5.25979 5.31910 5.34739 5.37910 5.40992 5.52799 5.58788 5.90594 6.77104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.376 4.376 3 C -0.139 4.139 4 C -0.140 4.140 5 Si 1.261 2.739 6 C -0.509 4.509 7 C -0.493 4.493 8 O -0.574 6.574 9 C 0.142 3.858 10 C -0.161 4.161 11 C -0.062 4.062 12 C -0.116 4.116 13 C -0.100 4.100 14 C -0.006 4.006 15 O -0.648 6.648 16 S 2.687 3.313 17 O -0.965 6.965 18 O -0.959 6.959 19 C -0.715 4.715 20 C -0.083 4.083 21 S 0.175 5.825 22 C -0.188 4.188 23 C -0.043 4.043 24 O -0.562 6.562 25 Si 0.909 3.091 26 H -0.216 1.216 27 H -0.234 1.234 28 H -0.256 1.256 29 C -0.049 4.049 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.163 0.837 46 H 0.177 0.823 47 H 0.177 0.823 48 H 0.156 0.844 49 H 0.203 0.797 50 H 0.120 0.880 51 H 0.403 0.597 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -3.310 7.479 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.420 4.420 3 C -0.196 4.196 4 C -0.197 4.197 5 Si 1.398 2.602 6 C -0.612 4.612 7 C -0.598 4.598 8 O -0.527 6.527 9 C 0.095 3.905 10 C -0.179 4.179 11 C -0.080 4.080 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.048 4.048 15 O -0.608 6.608 16 S 2.781 3.219 17 O -0.963 6.963 18 O -0.957 6.957 19 C -0.815 4.815 20 C -0.222 4.222 21 S 0.440 5.560 22 C -0.306 4.306 23 C -0.156 4.156 24 O -0.373 6.373 25 Si 0.730 3.270 26 H -0.138 1.138 27 H -0.157 1.157 28 H -0.181 1.181 29 C -0.077 4.077 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.181 0.819 46 H 0.194 0.806 47 H 0.194 0.806 48 H 0.174 0.826 49 H 0.220 0.780 50 H 0.137 0.863 51 H 0.255 0.745 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.087 -3.054 8.543 10.925 hybrid contribution 0.024 0.186 -1.353 1.366 sum 6.111 -2.868 7.190 9.862 Atomic orbital electron populations 1.21642 0.95075 1.00970 1.02647 1.25790 0.99683 1.03901 1.12625 1.21598 1.01873 0.93562 1.02539 1.21583 1.01707 0.99694 0.96712 0.77443 0.66439 0.50824 0.65489 1.27009 1.07330 1.09399 1.17466 1.26773 1.20978 1.06275 1.05784 1.83855 1.84042 1.46206 1.38585 1.18492 0.93190 0.95400 0.83403 1.21704 0.94683 1.00441 1.01108 1.21773 1.01330 0.93887 0.91026 1.21525 0.90985 0.99551 1.01347 1.21599 1.00220 0.95333 0.94868 1.18620 0.81665 1.06080 0.98448 1.85729 1.29931 1.58972 1.86143 1.02117 0.73328 0.72780 0.73694 1.93578 1.49871 1.69085 1.83804 1.93608 1.72041 1.73384 1.56690 1.29929 1.13990 1.15282 1.22307 1.26170 0.96697 1.04166 0.95135 1.84421 1.36330 1.04949 1.30347 1.24173 1.03120 1.00714 1.02578 1.24135 1.04812 0.86280 1.00333 1.86497 1.82978 1.23597 1.44187 0.86098 0.80725 0.84297 0.75915 1.13817 1.15658 1.18063 1.19624 1.00511 0.89949 0.97608 0.91966 0.92037 0.94306 0.90776 0.92471 0.91812 0.93231 0.92549 0.90867 0.90860 0.89254 0.91812 0.89802 0.89134 0.89914 0.81933 0.80609 0.80606 0.82611 0.78035 0.86271 0.74544 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.86 71.98 0.57 -0.46 16 2 C -0.38 -1.30 0.53 -10.79 -0.01 -1.31 16 3 C -0.14 -0.02 7.86 71.98 0.57 0.55 16 4 C -0.14 -0.46 7.85 71.98 0.56 0.11 16 5 Si 1.26 3.01 8.14 68.60 0.56 3.57 16 6 C -0.51 -1.82 7.95 113.37 0.90 -0.92 16 7 C -0.49 1.24 8.25 113.37 0.94 2.18 16 8 O -0.57 -4.51 8.16 -79.25 -0.65 -5.16 16 9 C 0.14 0.74 4.02 22.57 0.09 0.83 16 10 C -0.16 0.25 8.43 22.35 0.19 0.44 16 11 C -0.06 0.44 10.04 22.27 0.22 0.66 16 12 C -0.12 0.83 10.04 22.27 0.22 1.05 16 13 C -0.10 0.16 8.83 22.35 0.20 0.36 16 14 C -0.01 -0.03 4.24 22.57 0.10 0.07 16 15 O -0.65 -5.58 9.19 -60.56 -0.56 -6.14 16 16 S 2.69 31.55 5.48 -56.49 -0.31 31.24 16 17 O -0.97 -16.49 17.75 -118.78 -2.11 -18.60 16 18 O -0.96 -15.22 15.75 -118.72 -1.87 -17.09 16 19 C -0.71 -4.36 4.87 21.22 0.10 -4.25 16 20 C -0.08 -0.22 10.76 66.72 0.72 0.49 16 21 S 0.18 0.13 20.61 -56.49 -1.16 -1.03 16 22 C -0.19 -0.30 5.73 24.59 0.14 -0.16 16 23 C -0.04 0.15 2.95 71.24 0.21 0.36 16 24 O -0.56 0.75 12.86 -148.98 -1.92 -1.16 16 25 Si 0.91 -3.66 26.27 68.60 1.80 -1.86 16 26 H -0.22 1.21 7.11 99.48 0.71 1.92 16 27 H -0.23 0.95 7.11 99.48 0.71 1.66 16 28 H -0.26 -0.11 7.11 99.48 0.71 0.60 16 29 C -0.05 -0.21 9.10 21.22 0.19 -0.02 16 30 H 0.06 0.36 8.06 -2.39 -0.02 0.34 16 31 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.04 0.39 7.85 -2.39 -0.02 0.38 16 33 H 0.07 -0.22 8.06 -2.39 -0.02 -0.24 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.06 -0.09 7.53 -2.39 -0.02 -0.10 16 36 H 0.05 0.28 7.97 -2.39 -0.02 0.26 16 37 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.07 -0.03 7.87 -2.39 -0.02 -0.05 16 39 H 0.07 0.20 7.92 -2.38 -0.02 0.19 16 40 H 0.09 0.04 7.63 -2.39 -0.02 0.03 16 41 H 0.06 0.43 7.63 -2.39 -0.02 0.42 16 42 H 0.08 -0.30 7.86 -2.39 -0.02 -0.31 16 43 H 0.09 -0.39 7.96 -2.39 -0.02 -0.40 16 44 H 0.08 -0.34 6.99 -2.39 -0.02 -0.36 16 45 H 0.16 -0.88 7.79 -2.91 -0.02 -0.90 16 46 H 0.18 -2.48 8.06 -2.91 -0.02 -2.50 16 47 H 0.18 -2.49 8.06 -2.91 -0.02 -2.51 16 48 H 0.16 -0.82 7.78 -2.91 -0.02 -0.84 16 49 H 0.20 -0.29 8.06 -2.91 -0.02 -0.31 16 50 H 0.12 -1.15 7.96 -2.39 -0.02 -1.17 16 51 H 0.40 -4.46 8.74 -74.05 -0.65 -5.11 16 52 H 0.16 0.64 7.85 -2.91 -0.02 0.62 16 Total: 0.00 -24.87 446.84 0.73 -24.14 By element: Atomic # 1 Polarization: -8.92 SS G_CDS: 1.04 Total: -7.88 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.91 Total: -0.01 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -7.10 Total: -48.15 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.36 Total: 1.71 kcal Atomic # 16 Polarization: 31.68 SS G_CDS: -1.47 Total: 30.20 kcal Total: -24.87 0.73 -24.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15065180_15065232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.581 kcal (2) G-P(sol) polarization free energy of solvation -24.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds