Wall clock time and date at job start Mon Mar 8 2021 12:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47494 * 2 1 4 4 C 1.53004 * 109.46976 * 240.00366 * 2 1 3 5 5 Si 1.86295 * 109.47221 * 120.00448 * 2 1 3 6 6 C 1.86299 * 109.46983 * 299.99590 * 5 2 1 7 7 C 1.86305 * 109.47266 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.47439 * 59.99823 * 5 2 1 9 9 C 1.35898 * 114.00419 * 180.02562 * 8 5 2 10 10 C 1.38751 * 120.02843 * 270.02650 * 9 8 5 11 11 C 1.38190 * 120.05649 * 179.97438 * 10 9 8 12 12 C 1.38154 * 120.10860 * 359.77718 * 11 10 9 13 13 C 1.38793 * 120.05689 * 0.47137 * 12 11 10 14 14 O 1.35895 * 120.03205 * 179.78687 * 13 12 11 15 15 S 1.52198 * 113.99881 * 277.06707 * 14 13 12 16 16 O 1.42105 * 106.40405 * 168.54253 * 15 14 13 17 17 O 1.42097 * 106.40486 * 35.62420 * 15 14 13 18 18 C 1.76201 * 107.21925 * 282.08211 * 15 14 13 19 19 C 1.33391 * 125.20606 * 174.37838 * 18 15 14 20 20 C 1.50696 * 122.53720 * 359.95421 * 19 18 15 21 21 O 1.42897 * 109.47414 * 75.00326 * 20 19 18 22 22 Si 1.86301 * 109.47179 * 195.00417 * 20 19 18 23 23 H 1.48500 * 109.47114 * 59.99836 * 22 20 19 24 24 H 1.48498 * 109.47205 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46893 * 299.99710 * 22 20 19 26 26 C 1.38421 * 114.92358 * 179.97438 * 19 18 15 27 27 C 1.33392 * 114.91734 * 359.97438 * 26 19 18 28 28 S 1.75880 * 109.59793 * 359.97438 * 27 26 19 29 29 C 1.38616 * 119.94060 * 359.51632 * 13 12 11 30 30 H 1.09004 * 109.47166 * 300.00195 * 1 2 3 31 31 H 1.09006 * 109.47318 * 59.99498 * 1 2 3 32 32 H 1.08999 * 109.47538 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47613 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47547 * 300.00169 * 3 2 1 35 35 H 1.09004 * 109.47074 * 59.99748 * 3 2 1 36 36 H 1.09004 * 109.46907 * 299.99482 * 4 2 1 37 37 H 1.08995 * 109.47447 * 60.00089 * 4 2 1 38 38 H 1.09003 * 109.46955 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.47751 * 179.97438 * 6 5 2 40 40 H 1.08996 * 109.47657 * 300.00256 * 6 5 2 41 41 H 1.09004 * 109.47078 * 60.00372 * 6 5 2 42 42 H 1.09000 * 109.46762 * 299.99976 * 7 5 2 43 43 H 1.08996 * 109.46818 * 60.00084 * 7 5 2 44 44 H 1.08995 * 109.47005 * 179.97438 * 7 5 2 45 45 H 1.08000 * 119.96828 * 359.96760 * 10 9 8 46 46 H 1.08005 * 119.94865 * 180.02562 * 11 10 9 47 47 H 1.08001 * 119.97422 * 180.25986 * 12 11 10 48 48 H 1.09001 * 109.47135 * 315.00139 * 20 19 18 49 49 H 0.96696 * 114.00182 * 59.99766 * 21 20 19 50 50 H 1.07995 * 122.54299 * 180.02562 * 26 19 18 51 51 H 1.08002 * 125.19739 * 180.26752 * 27 26 19 52 52 H 1.08000 * 120.05160 * 180.23443 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6073 -2.4160 1.5210 9 6 2.0079 -3.1440 2.5964 10 6 3.1939 -3.8624 2.5458 11 6 3.6020 -4.6024 3.6391 12 6 2.8329 -4.6253 4.7866 13 6 1.6432 -3.9126 4.8405 14 8 0.8850 -3.9390 5.9679 15 16 -0.0264 -5.1534 6.0727 16 8 -0.5307 -5.1633 7.4012 17 8 0.6888 -6.2421 5.5048 18 6 -1.4077 -4.8615 5.0184 19 6 -2.3749 -5.7419 4.7566 20 6 -2.3932 -7.1265 5.3510 21 8 -2.7822 -7.0504 6.7239 22 14 -3.6092 -8.1865 4.4190 23 1 -3.2049 -8.2657 2.9922 24 1 -3.6268 -9.5511 5.0044 25 1 -4.9646 -7.5878 4.5170 26 6 -3.3603 -5.2876 3.8971 27 6 -3.1935 -4.0379 3.4614 28 16 -1.7234 -3.3635 4.1522 29 6 1.2318 -3.1693 3.7451 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2491 39 1 1.8930 -0.5142 3.9322 40 1 1.8933 1.0275 3.0423 41 1 0.4400 -0.0001 3.0423 42 1 4.3769 -1.3930 0.6306 43 1 4.3776 0.1485 1.5205 44 1 4.3773 -1.3925 2.4108 45 1 3.7985 -3.8432 1.6511 46 1 4.5257 -5.1606 3.5980 47 1 3.1561 -5.2011 5.6413 48 1 -1.3984 -7.5660 5.2791 49 1 -3.6594 -6.6683 6.8636 50 1 -4.2008 -5.8982 3.6023 51 1 -3.8619 -3.5180 2.7910 52 1 0.3082 -2.6110 3.7864 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15065182_13652106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:59:50 Heat of formation + Delta-G solvation = -152.256637 kcal Electronic energy + Delta-G solvation = -37428.974862 eV Core-core repulsion = 32737.441153 eV Total energy + Delta-G solvation = -4691.533709 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 430.099 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.38883 -40.41925 -40.07769 -38.25568 -37.45356 -37.15118 -37.02731 -36.93799 -32.12110 -31.46378 -30.87865 -29.45849 -29.23886 -28.14749 -28.03213 -27.55322 -24.84249 -24.44049 -24.13009 -22.17328 -21.18452 -20.53228 -19.93506 -19.44714 -18.84673 -18.21266 -17.98775 -17.75165 -17.50760 -16.84191 -16.61607 -16.30262 -16.17973 -16.00004 -15.76322 -15.63328 -15.17756 -15.09249 -14.91613 -14.85175 -14.61043 -14.21240 -14.14449 -14.08729 -13.87662 -13.81998 -13.60349 -13.51526 -13.37034 -13.32129 -13.15057 -13.09345 -13.08033 -13.00524 -12.87094 -12.74646 -12.68410 -12.53981 -12.30692 -12.26911 -12.21529 -12.18056 -11.84034 -11.80020 -11.56557 -10.74781 -10.60169 -10.50506 -10.31105 -10.29390 -9.77895 -9.64555 -1.03222 -0.74305 -0.11692 -0.05032 0.09011 0.49451 0.99154 1.01203 1.15313 1.31883 1.35332 1.45062 1.47042 1.76469 1.83601 2.11220 2.38758 2.46247 3.17149 3.33380 3.41090 3.51978 3.67404 3.76973 3.88266 3.89175 3.94031 3.94984 3.98370 4.02218 4.13945 4.30892 4.31426 4.54531 4.54752 4.56835 4.57763 4.60073 4.66417 4.69368 4.73813 4.76698 4.83791 4.84568 4.93904 4.94673 4.95157 5.00777 5.03531 5.07634 5.17519 5.20058 5.25687 5.30665 5.39553 5.44872 5.74656 6.45017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.369 4.369 3 C -0.138 4.138 4 C -0.137 4.137 5 Si 1.271 2.729 6 C -0.511 4.511 7 C -0.506 4.506 8 O -0.553 6.553 9 C 0.152 3.848 10 C -0.134 4.134 11 C -0.074 4.074 12 C -0.105 4.105 13 C 0.080 3.920 14 O -0.659 6.659 15 S 2.697 3.303 16 O -0.897 6.897 17 O -0.938 6.938 18 C -0.784 4.784 19 C 0.014 3.986 20 C -0.116 4.116 21 O -0.520 6.520 22 Si 0.966 3.034 23 H -0.243 1.243 24 H -0.242 1.242 25 H -0.246 1.246 26 C -0.169 4.169 27 C -0.156 4.156 28 S 0.199 5.801 29 C -0.162 4.162 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.148 0.852 48 H 0.133 0.867 49 H 0.381 0.619 50 H 0.155 0.845 51 H 0.181 0.819 52 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 2.832 -5.313 6.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.413 4.413 3 C -0.195 4.195 4 C -0.194 4.194 5 Si 1.406 2.594 6 C -0.614 4.614 7 C -0.609 4.609 8 O -0.507 6.507 9 C 0.108 3.892 10 C -0.154 4.154 11 C -0.092 4.092 12 C -0.125 4.125 13 C 0.039 3.961 14 O -0.618 6.618 15 S 2.785 3.215 16 O -0.895 6.895 17 O -0.936 6.936 18 C -0.982 4.982 19 C -0.003 4.003 20 C -0.228 4.228 21 O -0.325 6.325 22 Si 0.785 3.215 23 H -0.166 1.166 24 H -0.166 1.166 25 H -0.170 1.170 26 C -0.199 4.199 27 C -0.293 4.293 28 S 0.467 5.533 29 C -0.184 4.184 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.166 0.834 46 H 0.169 0.831 47 H 0.165 0.835 48 H 0.151 0.849 49 H 0.229 0.771 50 H 0.172 0.828 51 H 0.198 0.802 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.276 3.164 -5.376 6.367 hybrid contribution -1.659 0.005 -0.117 1.663 sum -0.383 3.169 -5.493 6.354 Atomic orbital electron populations 1.21556 0.93707 1.02053 1.02152 1.25697 1.00771 1.02802 1.12072 1.21565 1.00955 0.94543 1.02425 1.21550 1.00826 1.00237 0.96781 0.77222 0.64174 0.52042 0.65942 1.27027 1.07121 1.09809 1.17436 1.26964 1.23576 1.05327 1.05041 1.83837 1.78151 1.45339 1.43361 1.17577 0.92241 0.94778 0.84636 1.21623 0.95569 0.97862 1.00328 1.21011 0.99837 0.97230 0.91117 1.21417 0.92555 0.98064 1.00488 1.17784 0.93057 1.03070 0.82208 1.85784 1.60942 1.68026 1.47039 1.02202 0.72779 0.72533 0.74023 1.93696 1.79282 1.83871 1.32669 1.93654 1.69069 1.51497 1.79417 1.35754 1.27327 1.07177 1.27973 1.18993 0.91517 0.96170 0.93613 1.25422 1.11386 0.96367 0.89627 1.86672 1.39765 1.85469 1.20638 0.85458 0.77253 0.79503 0.79287 1.16614 1.16558 1.16982 1.20327 1.01506 0.96949 1.01091 1.26226 1.00634 0.98884 1.03594 1.84044 1.18352 1.11211 1.39727 1.21427 1.02403 1.02678 0.91881 0.92525 0.92400 0.92205 0.92309 0.92176 0.92357 0.92138 0.92438 0.92446 0.90780 0.89985 0.90671 0.90491 0.90150 0.90798 0.83444 0.83139 0.83458 0.84950 0.77149 0.82751 0.80182 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.20 7.85 37.15 0.29 0.49 16 2 C -0.37 0.62 0.53 -90.62 -0.05 0.57 16 3 C -0.14 0.27 7.85 37.16 0.29 0.56 16 4 C -0.14 0.20 7.85 37.16 0.29 0.49 16 5 Si 1.27 -2.39 8.27 -169.99 -1.41 -3.79 16 6 C -0.51 0.69 8.31 101.05 0.84 1.53 16 7 C -0.51 1.04 8.31 101.05 0.84 1.88 16 8 O -0.55 0.18 8.52 -19.42 -0.17 0.01 16 9 C 0.15 0.06 4.64 -39.24 -0.18 -0.12 16 10 C -0.13 0.13 8.77 -39.41 -0.35 -0.21 16 11 C -0.07 0.09 10.04 -39.63 -0.40 -0.31 16 12 C -0.10 -0.10 8.72 -39.41 -0.34 -0.44 16 13 C 0.08 0.20 4.92 -39.24 -0.19 0.00 16 14 O -0.66 -2.29 9.98 -51.54 -0.51 -2.81 16 15 S 2.70 12.81 4.85 -107.50 -0.52 12.29 16 16 O -0.90 -6.65 17.89 -66.81 -1.20 -7.84 16 17 O -0.94 -4.96 15.01 -66.81 -1.00 -5.96 16 18 C -0.78 -2.39 6.35 29.04 0.18 -2.20 16 19 C 0.01 0.03 5.13 -106.25 -0.55 -0.52 16 20 C -0.12 -0.19 2.33 36.00 0.08 -0.11 16 21 O -0.52 -1.18 12.76 -35.23 -0.45 -1.63 16 22 Si 0.97 -0.37 25.71 -169.99 -4.37 -4.74 16 23 H -0.24 0.02 7.11 56.52 0.40 0.42 16 24 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 25 H -0.25 0.35 6.85 56.52 0.39 0.74 16 26 C -0.17 0.02 8.74 -41.21 -0.36 -0.34 16 27 C -0.16 0.15 11.23 29.04 0.33 0.47 16 28 S 0.20 0.13 19.12 -107.50 -2.06 -1.93 16 29 C -0.16 -0.22 7.59 -39.29 -0.30 -0.52 16 30 H 0.06 -0.12 7.79 -51.93 -0.40 -0.52 16 31 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.06 -0.08 7.97 -51.93 -0.41 -0.50 16 33 H 0.06 -0.15 7.79 -51.93 -0.40 -0.56 16 34 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.06 -0.15 7.79 -51.93 -0.40 -0.55 16 36 H 0.06 -0.08 7.97 -51.93 -0.41 -0.49 16 37 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.06 -0.12 7.79 -51.93 -0.40 -0.53 16 39 H 0.07 -0.06 7.38 -51.93 -0.38 -0.45 16 40 H 0.08 -0.17 7.79 -51.93 -0.40 -0.57 16 41 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 42 H 0.08 -0.19 7.79 -51.93 -0.40 -0.59 16 43 H 0.08 -0.19 7.79 -51.93 -0.40 -0.60 16 44 H 0.07 -0.15 7.37 -51.93 -0.38 -0.53 16 45 H 0.15 -0.48 8.06 -52.49 -0.42 -0.90 16 46 H 0.15 -0.62 8.06 -52.48 -0.42 -1.04 16 47 H 0.15 -0.06 8.06 -52.49 -0.42 -0.48 16 48 H 0.13 0.25 6.90 -51.93 -0.36 -0.11 16 49 H 0.38 -0.69 8.70 45.56 0.40 -0.29 16 50 H 0.16 -0.35 5.56 -52.49 -0.29 -0.64 16 51 H 0.18 -0.73 8.06 -52.49 -0.42 -1.16 16 52 H 0.15 0.03 4.88 -36.78 -0.18 -0.15 16 LS Contribution 438.04 15.07 6.60 6.60 Total: 0.00 -8.22 438.04 -11.68 -19.90 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: -7.03 Total: -11.31 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 0.43 Total: 1.22 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -3.33 Total: -18.24 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: -5.78 Total: -8.53 kcal Atomic # 16 Polarization: 12.93 SS G_CDS: -2.58 Total: 10.36 kcal Total LS contribution 6.60 Total: 6.60 kcal Total: -8.22 -11.68 -19.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15065182_13652106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.358 kcal (2) G-P(sol) polarization free energy of solvation -8.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds