Wall clock time and date at job start Mon Mar 8 2021 12:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47494 * 2 1 4 4 C 1.53004 * 109.46976 * 240.00366 * 2 1 3 5 5 Si 1.86295 * 109.47221 * 120.00448 * 2 1 3 6 6 C 1.86299 * 109.46983 * 299.99590 * 5 2 1 7 7 C 1.86305 * 109.47266 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.47439 * 59.99823 * 5 2 1 9 9 C 1.35898 * 114.00419 * 180.02562 * 8 5 2 10 10 C 1.38751 * 120.02843 * 270.02650 * 9 8 5 11 11 C 1.38190 * 120.05649 * 179.97438 * 10 9 8 12 12 C 1.38154 * 120.10860 * 359.77718 * 11 10 9 13 13 C 1.38793 * 120.05689 * 0.47137 * 12 11 10 14 14 O 1.35895 * 120.03205 * 179.78687 * 13 12 11 15 15 S 1.52198 * 113.99881 * 277.06707 * 14 13 12 16 16 O 1.42105 * 106.40405 * 168.54253 * 15 14 13 17 17 O 1.42097 * 106.40486 * 35.62420 * 15 14 13 18 18 C 1.76201 * 107.21925 * 282.08211 * 15 14 13 19 19 C 1.33391 * 125.20606 * 174.37838 * 18 15 14 20 20 C 1.50696 * 122.53720 * 359.95421 * 19 18 15 21 21 O 1.42897 * 109.47414 * 75.00326 * 20 19 18 22 22 Si 1.86301 * 109.47179 * 195.00417 * 20 19 18 23 23 H 1.48500 * 109.47114 * 59.99836 * 22 20 19 24 24 H 1.48498 * 109.47205 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46893 * 299.99710 * 22 20 19 26 26 C 1.38421 * 114.92358 * 179.97438 * 19 18 15 27 27 C 1.33392 * 114.91734 * 359.97438 * 26 19 18 28 28 S 1.75880 * 109.59793 * 359.97438 * 27 26 19 29 29 C 1.38616 * 119.94060 * 359.51632 * 13 12 11 30 30 H 1.09004 * 109.47166 * 300.00195 * 1 2 3 31 31 H 1.09006 * 109.47318 * 59.99498 * 1 2 3 32 32 H 1.08999 * 109.47538 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47613 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47547 * 300.00169 * 3 2 1 35 35 H 1.09004 * 109.47074 * 59.99748 * 3 2 1 36 36 H 1.09004 * 109.46907 * 299.99482 * 4 2 1 37 37 H 1.08995 * 109.47447 * 60.00089 * 4 2 1 38 38 H 1.09003 * 109.46955 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.47751 * 179.97438 * 6 5 2 40 40 H 1.08996 * 109.47657 * 300.00256 * 6 5 2 41 41 H 1.09004 * 109.47078 * 60.00372 * 6 5 2 42 42 H 1.09000 * 109.46762 * 299.99976 * 7 5 2 43 43 H 1.08996 * 109.46818 * 60.00084 * 7 5 2 44 44 H 1.08995 * 109.47005 * 179.97438 * 7 5 2 45 45 H 1.08000 * 119.96828 * 359.96760 * 10 9 8 46 46 H 1.08005 * 119.94865 * 180.02562 * 11 10 9 47 47 H 1.08001 * 119.97422 * 180.25986 * 12 11 10 48 48 H 1.09001 * 109.47135 * 315.00139 * 20 19 18 49 49 H 0.96696 * 114.00182 * 59.99766 * 21 20 19 50 50 H 1.07995 * 122.54299 * 180.02562 * 26 19 18 51 51 H 1.08002 * 125.19739 * 180.26752 * 27 26 19 52 52 H 1.08000 * 120.05160 * 180.23443 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6073 -2.4160 1.5210 9 6 2.0079 -3.1440 2.5964 10 6 3.1939 -3.8624 2.5458 11 6 3.6020 -4.6024 3.6391 12 6 2.8329 -4.6253 4.7866 13 6 1.6432 -3.9126 4.8405 14 8 0.8850 -3.9390 5.9679 15 16 -0.0264 -5.1534 6.0727 16 8 -0.5307 -5.1633 7.4012 17 8 0.6888 -6.2421 5.5048 18 6 -1.4077 -4.8615 5.0184 19 6 -2.3749 -5.7419 4.7566 20 6 -2.3932 -7.1265 5.3510 21 8 -2.7822 -7.0504 6.7239 22 14 -3.6092 -8.1865 4.4190 23 1 -3.2049 -8.2657 2.9922 24 1 -3.6268 -9.5511 5.0044 25 1 -4.9646 -7.5878 4.5170 26 6 -3.3603 -5.2876 3.8971 27 6 -3.1935 -4.0379 3.4614 28 16 -1.7234 -3.3635 4.1522 29 6 1.2318 -3.1693 3.7451 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2491 39 1 1.8930 -0.5142 3.9322 40 1 1.8933 1.0275 3.0423 41 1 0.4400 -0.0001 3.0423 42 1 4.3769 -1.3930 0.6306 43 1 4.3776 0.1485 1.5205 44 1 4.3773 -1.3925 2.4108 45 1 3.7985 -3.8432 1.6511 46 1 4.5257 -5.1606 3.5980 47 1 3.1561 -5.2011 5.6413 48 1 -1.3984 -7.5660 5.2791 49 1 -3.6594 -6.6683 6.8636 50 1 -4.2008 -5.8982 3.6023 51 1 -3.8619 -3.5180 2.7910 52 1 0.3082 -2.6110 3.7864 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15065182_13652106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:59:48 Heat of formation + Delta-G solvation = -148.610115 kcal Electronic energy + Delta-G solvation = -37428.816737 eV Core-core repulsion = 32737.441153 eV Total energy + Delta-G solvation = -4691.375583 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 430.099 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.51277 -40.44294 -40.12420 -38.62696 -37.43767 -37.39535 -37.16951 -36.87315 -32.12149 -31.48670 -30.86063 -29.30671 -29.08714 -28.24818 -27.86488 -27.40792 -24.93158 -24.45850 -24.11302 -22.30528 -21.23764 -20.43324 -20.06520 -19.55478 -19.02068 -18.31171 -18.10440 -17.73208 -17.54060 -16.94568 -16.58771 -16.38292 -16.24948 -15.98865 -15.83465 -15.62716 -15.10471 -15.07727 -14.82583 -14.76682 -14.61265 -14.33499 -14.14015 -14.05400 -13.89090 -13.77459 -13.60165 -13.53396 -13.45638 -13.38883 -13.27807 -13.20807 -12.96250 -12.93373 -12.89101 -12.84259 -12.67385 -12.40245 -12.36573 -12.18650 -12.16317 -12.10658 -11.68163 -11.64797 -11.55466 -10.66345 -10.61263 -10.54795 -10.31055 -10.14897 -9.79246 -9.66171 -1.26040 -0.80212 -0.11075 -0.09038 0.01441 0.50919 0.99226 1.00146 1.16079 1.24881 1.41377 1.51496 1.60756 1.86809 1.92355 2.16360 2.22233 2.45155 2.94903 3.30421 3.40462 3.51283 3.66108 3.80173 3.84700 3.94988 4.01293 4.05575 4.09867 4.10609 4.20474 4.28935 4.45683 4.58441 4.67111 4.68982 4.73255 4.76668 4.77660 4.77938 4.82240 4.84096 4.86918 4.98121 5.00094 5.04114 5.08923 5.09763 5.12178 5.18800 5.24206 5.35176 5.40657 5.44790 5.55377 5.62712 5.79399 6.54267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.370 4.370 3 C -0.143 4.143 4 C -0.141 4.141 5 Si 1.289 2.711 6 C -0.523 4.523 7 C -0.510 4.510 8 O -0.558 6.558 9 C 0.145 3.855 10 C -0.131 4.131 11 C -0.068 4.068 12 C -0.122 4.122 13 C 0.051 3.949 14 O -0.661 6.661 15 S 2.703 3.297 16 O -0.940 6.940 17 O -0.955 6.955 18 C -0.815 4.815 19 C 0.013 3.987 20 C -0.139 4.139 21 O -0.542 6.542 22 Si 1.006 2.994 23 H -0.244 1.244 24 H -0.264 1.264 25 H -0.220 1.220 26 C -0.180 4.180 27 C -0.138 4.138 28 S 0.198 5.802 29 C -0.172 4.172 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.175 0.825 46 H 0.183 0.817 47 H 0.151 0.849 48 H 0.117 0.883 49 H 0.395 0.605 50 H 0.181 0.819 51 H 0.218 0.782 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 3.304 -7.457 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.414 4.414 3 C -0.200 4.200 4 C -0.198 4.198 5 Si 1.424 2.576 6 C -0.625 4.625 7 C -0.614 4.614 8 O -0.512 6.512 9 C 0.101 3.899 10 C -0.150 4.150 11 C -0.086 4.086 12 C -0.142 4.142 13 C 0.010 3.990 14 O -0.620 6.620 15 S 2.794 3.206 16 O -0.938 6.938 17 O -0.954 6.954 18 C -1.016 5.016 19 C -0.005 4.005 20 C -0.248 4.248 21 O -0.350 6.350 22 Si 0.823 3.177 23 H -0.168 1.168 24 H -0.188 1.188 25 H -0.142 1.142 26 C -0.209 4.209 27 C -0.275 4.275 28 S 0.465 5.535 29 C -0.194 4.194 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.192 0.808 46 H 0.201 0.799 47 H 0.169 0.831 48 H 0.135 0.865 49 H 0.246 0.754 50 H 0.198 0.802 51 H 0.234 0.766 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.901 3.661 -7.480 8.377 hybrid contribution -1.501 -0.078 0.486 1.580 sum -0.601 3.583 -6.994 7.882 Atomic orbital electron populations 1.21612 0.94070 1.02033 1.02266 1.25724 1.00553 1.03025 1.12094 1.21626 1.01571 0.94345 1.02475 1.21598 1.01454 1.00086 0.96665 0.76922 0.64335 0.51191 0.65130 1.27169 1.07341 1.10345 1.17674 1.26973 1.23071 1.05855 1.05469 1.83838 1.78504 1.45863 1.42963 1.17740 0.92638 0.95093 0.84436 1.21995 0.95106 0.96666 1.01207 1.21407 1.00420 0.96743 0.90003 1.21721 0.92598 0.98191 1.01717 1.18156 0.93776 1.04737 0.82359 1.85759 1.61142 1.67234 1.47897 1.01663 0.72976 0.72440 0.73515 1.93634 1.80125 1.84757 1.35287 1.93607 1.69795 1.52567 1.79445 1.35435 1.27521 1.09098 1.29500 1.19289 0.91654 0.95995 0.93537 1.25822 1.12042 0.97122 0.89793 1.86629 1.41159 1.85775 1.21426 0.84917 0.77318 0.77427 0.78010 1.16756 1.18844 1.14208 1.20558 1.01793 0.97669 1.00869 1.26719 0.99627 0.98468 1.02657 1.84015 1.19607 1.10267 1.39562 1.21558 1.02975 1.02830 0.92041 0.91994 0.92754 0.92303 0.91476 0.92637 0.91857 0.92301 0.92894 0.91556 0.91559 0.89375 0.90596 0.89709 0.89654 0.90725 0.80795 0.79938 0.83079 0.86509 0.75445 0.80184 0.76564 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.44 7.85 71.98 0.56 1.00 16 2 C -0.37 1.41 0.53 -10.80 -0.01 1.40 16 3 C -0.14 0.64 7.85 71.98 0.56 1.20 16 4 C -0.14 0.49 7.85 71.98 0.56 1.06 16 5 Si 1.29 -5.43 8.27 68.60 0.57 -4.86 16 6 C -0.52 1.24 8.31 113.37 0.94 2.18 16 7 C -0.51 2.68 8.31 113.37 0.94 3.62 16 8 O -0.56 0.57 8.52 -92.40 -0.79 -0.22 16 9 C 0.15 0.11 4.64 22.49 0.10 0.21 16 10 C -0.13 0.38 8.77 22.38 0.20 0.58 16 11 C -0.07 0.19 10.04 22.24 0.22 0.42 16 12 C -0.12 -0.38 8.72 22.38 0.20 -0.18 16 13 C 0.05 0.34 4.92 22.49 0.11 0.45 16 14 O -0.66 -6.53 9.98 -61.64 -0.62 -7.14 16 15 S 2.70 33.85 4.85 -56.49 -0.27 33.58 16 16 O -0.94 -17.45 17.89 -118.78 -2.12 -19.57 16 17 O -0.96 -13.10 15.01 -118.78 -1.78 -14.88 16 18 C -0.82 -6.34 6.35 66.72 0.42 -5.92 16 19 C 0.01 0.06 5.13 -20.92 -0.11 -0.04 16 20 C -0.14 -0.66 2.33 71.23 0.17 -0.50 16 21 O -0.54 -3.55 12.76 -148.98 -1.90 -5.45 16 22 Si 1.01 -1.21 25.71 68.60 1.76 0.56 16 23 H -0.24 0.28 7.11 99.48 0.71 0.99 16 24 H -0.26 -0.54 7.11 99.48 0.71 0.17 16 25 H -0.22 1.20 6.85 99.48 0.68 1.88 16 26 C -0.18 0.25 8.74 21.22 0.19 0.43 16 27 C -0.14 0.48 11.23 66.72 0.75 1.23 16 28 S 0.20 0.35 19.12 -56.49 -1.08 -0.73 16 29 C -0.17 -0.66 7.59 22.46 0.17 -0.49 16 30 H 0.06 -0.27 7.79 -2.38 -0.02 -0.29 16 31 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.06 -0.17 7.97 -2.39 -0.02 -0.19 16 33 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 34 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.06 -0.35 7.79 -2.38 -0.02 -0.37 16 36 H 0.06 -0.19 7.97 -2.38 -0.02 -0.21 16 37 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 39 H 0.07 -0.05 7.38 -2.39 -0.02 -0.06 16 40 H 0.09 -0.35 7.79 -2.39 -0.02 -0.37 16 41 H 0.07 -0.22 7.79 -2.38 -0.02 -0.23 16 42 H 0.08 -0.56 7.79 -2.39 -0.02 -0.58 16 43 H 0.08 -0.51 7.79 -2.39 -0.02 -0.53 16 44 H 0.07 -0.38 7.37 -2.39 -0.02 -0.40 16 45 H 0.17 -1.51 8.06 -2.91 -0.02 -1.53 16 46 H 0.18 -1.82 8.06 -2.91 -0.02 -1.85 16 47 H 0.15 0.17 8.06 -2.91 -0.02 0.15 16 48 H 0.12 0.80 6.90 -2.39 -0.02 0.78 16 49 H 0.40 -0.90 8.70 -74.06 -0.64 -1.54 16 50 H 0.18 -1.27 5.56 -2.91 -0.02 -1.29 16 51 H 0.22 -2.46 8.06 -2.91 -0.02 -2.49 16 52 H 0.15 0.27 4.88 -12.90 -0.06 0.21 16 Total: 0.00 -21.87 438.04 0.74 -21.13 By element: Atomic # 1 Polarization: -10.05 SS G_CDS: 0.98 Total: -9.07 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.99 Total: 6.65 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -7.21 Total: -47.26 kcal Atomic # 14 Polarization: -6.64 SS G_CDS: 2.33 Total: -4.31 kcal Atomic # 16 Polarization: 34.20 SS G_CDS: -1.35 Total: 32.85 kcal Total: -21.87 0.74 -21.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15065182_13652106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.475 kcal (2) G-P(sol) polarization free energy of solvation -21.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds