Wall clock time and date at job start Mon Mar 8 2021 12:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.46714 * 2 1 4 4 C 1.50702 * 109.47374 * 240.00156 * 2 1 3 5 5 C 1.33393 * 122.53632 * 284.99431 * 4 2 1 6 6 S 1.76205 * 125.20278 * 359.96112 * 5 4 2 7 7 O 1.42099 * 106.39995 * 336.45881 * 6 5 4 8 8 O 1.42093 * 106.39922 * 203.53784 * 6 5 4 9 9 N 1.65604 * 107.21816 * 89.99750 * 6 5 4 10 10 C 1.46495 * 119.99941 * 64.99694 * 9 6 5 11 11 C 1.53007 * 109.47191 * 165.02537 * 10 9 6 12 12 C 1.52998 * 112.84705 * 293.96139 * 11 10 9 13 13 O 1.42907 * 109.47183 * 305.94889 * 12 11 10 14 14 C 1.53783 * 113.61419 * 65.15348 * 11 10 9 15 15 C 1.53775 * 87.07928 * 139.98469 * 14 11 10 16 16 H 1.09000 * 113.61828 * 89.11594 * 15 14 11 17 17 O 1.42902 * 113.61324 * 219.93672 * 15 14 11 18 18 C 1.42899 * 114.00057 * 208.46917 * 17 15 14 19 19 C 1.50700 * 109.47129 * 179.97438 * 18 17 15 20 20 C 1.38231 * 120.00002 * 269.72867 * 19 18 17 21 21 C 1.38233 * 119.99708 * 179.74792 * 20 19 18 22 22 C 1.38236 * 120.00334 * 0.52557 * 21 20 19 23 23 C 1.38238 * 119.99684 * 359.75041 * 22 21 20 24 24 C 1.38236 * 120.00080 * 359.97438 * 23 22 21 25 25 C 1.53789 * 87.17562 * 334.52718 * 15 14 11 26 26 S 1.75880 * 109.59095 * 180.22191 * 5 4 2 27 27 C 1.75878 * 90.97104 * 359.68837 * 26 5 4 28 28 C 1.33386 * 109.59465 * 0.31161 * 27 26 5 29 29 H 0.96698 * 113.99488 * 60.00653 * 1 2 3 30 30 H 1.09001 * 109.46802 * 119.99390 * 2 1 3 31 31 H 1.48504 * 109.99880 * 298.67725 * 3 2 1 32 32 H 1.48494 * 110.00340 * 59.99675 * 3 2 1 33 33 H 0.97000 * 119.99841 * 245.00260 * 9 6 5 34 34 H 1.08996 * 109.47150 * 45.02476 * 10 9 6 35 35 H 1.09000 * 109.47686 * 285.02259 * 10 9 6 36 36 H 1.09002 * 109.47264 * 65.94578 * 12 11 10 37 37 H 1.08993 * 109.47334 * 185.94807 * 12 11 10 38 38 H 0.96703 * 113.99689 * 180.02562 * 13 12 11 39 39 H 1.09001 * 113.61034 * 25.43675 * 14 11 10 40 40 H 1.09003 * 113.69052 * 254.54512 * 14 11 10 41 41 H 1.09000 * 109.47138 * 300.00169 * 18 17 15 42 42 H 1.09004 * 109.47115 * 59.99572 * 18 17 15 43 43 H 1.08004 * 120.00053 * 359.97438 * 20 19 18 44 44 H 1.08005 * 119.99941 * 180.29578 * 21 20 19 45 45 H 1.07994 * 120.00698 * 179.76721 * 22 21 20 46 46 H 1.07999 * 120.00073 * 179.97438 * 23 22 21 47 47 H 1.07997 * 120.00053 * 180.02562 * 24 23 22 48 48 H 1.08997 * 113.61406 * 140.02146 * 25 15 14 49 49 H 1.08999 * 113.61214 * 270.92692 * 25 15 14 50 50 H 1.07999 * 125.20290 * 180.10289 * 27 26 5 51 51 H 1.07998 * 122.54003 * 179.77554 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2305 5 6 1.8963 -2.0378 -1.3571 6 16 1.2769 -3.1577 -0.1460 7 8 1.3622 -2.4854 1.1030 8 8 1.9014 -4.4086 -0.3996 9 7 -0.3364 -3.3696 -0.4538 10 6 -0.7665 -4.0124 -1.6979 11 6 -2.2360 -4.4217 -1.5790 12 6 -2.4657 -5.5140 -0.5327 13 8 -1.6121 -6.6261 -0.8097 14 6 -3.1986 -3.2297 -1.4467 15 6 -4.1503 -3.9956 -2.3806 16 1 -4.8383 -4.6581 -1.8554 17 8 -4.8054 -3.1623 -3.3390 18 6 -6.0844 -3.6469 -3.7529 19 6 -6.6810 -2.6955 -4.7578 20 6 -7.4786 -1.6502 -4.3310 21 6 -8.0216 -0.7744 -5.2524 22 6 -7.7759 -0.9502 -6.6014 23 6 -6.9830 -1.9989 -7.0285 24 6 -6.4353 -2.8714 -6.1067 25 6 -2.9075 -4.7122 -2.9347 26 16 2.5697 -2.4996 -2.9149 27 6 2.8612 -0.8137 -3.3223 28 6 2.4639 -0.0349 -2.3150 29 1 -0.3932 0.4416 -0.7651 30 1 1.7923 -0.5137 0.8901 31 1 1.5878 2.4585 -1.2243 32 1 1.5614 2.4680 1.2084 33 1 -0.9966 -3.0679 0.1897 34 1 -0.1565 -4.8973 -1.8794 35 1 -0.6497 -3.3144 -2.5269 36 1 -2.2400 -5.1209 0.4586 37 1 -3.5061 -5.8371 -0.5671 38 1 -1.7047 -7.3583 -0.1848 39 1 -2.8123 -2.3065 -1.8786 40 1 -3.5914 -3.0937 -0.4390 41 1 -5.9704 -4.6312 -4.2071 42 1 -6.7427 -3.7204 -2.8872 43 1 -7.6745 -1.5156 -3.2775 44 1 -8.6408 0.0452 -4.9187 45 1 -8.2032 -0.2682 -7.3215 46 1 -6.7914 -2.1366 -8.0824 47 1 -5.8155 -3.6904 -6.4404 48 1 -3.0648 -5.7734 -3.1271 49 1 -2.4417 -4.1935 -3.7726 50 1 3.2984 -0.4629 -4.2455 51 1 2.5509 1.0412 -2.3434 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15111640_13652106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:54 Heat of formation + Delta-G solvation = -100.797771 kcal Electronic energy + Delta-G solvation = -37522.607611 eV Core-core repulsion = 32608.784758 eV Total energy + Delta-G solvation = -4913.822852 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.110 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.29886 -40.17734 -40.11063 -38.37451 -38.13805 -37.17156 -37.05750 -36.73142 -35.41482 -32.73100 -31.83454 -31.41501 -29.05171 -27.98445 -27.17112 -26.91218 -26.52187 -24.29546 -23.52456 -22.99318 -22.28855 -21.59267 -20.12944 -19.69904 -19.43407 -18.66839 -18.51382 -18.31435 -17.93503 -17.68843 -17.04199 -16.67390 -16.56971 -16.56703 -16.35952 -16.09844 -15.94873 -15.69685 -15.65738 -15.23469 -15.17797 -15.01489 -14.45041 -14.30979 -14.24168 -14.09067 -13.96671 -13.86250 -13.68346 -13.54534 -13.36546 -13.32990 -13.29602 -13.25573 -12.85049 -12.79256 -12.57818 -12.45521 -12.22341 -12.15774 -11.96234 -11.72400 -11.59422 -11.47901 -11.39169 -10.80881 -10.68168 -10.57248 -10.41626 -10.39791 -9.87090 -9.80063 -9.65960 -4.94314 -0.83060 -0.57842 0.29869 0.30021 0.45170 0.71812 1.24036 1.25492 1.56053 1.91240 1.95713 2.55493 2.56960 3.04681 3.10329 3.35842 3.40905 3.42012 3.54499 3.58186 3.70310 3.84374 3.88844 3.92818 4.08175 4.08833 4.11202 4.14931 4.18204 4.25154 4.32449 4.38728 4.43624 4.54247 4.57064 4.59447 4.60706 4.63425 4.73099 4.75885 4.79786 4.85602 4.88194 4.92889 5.04065 5.08361 5.10922 5.12985 5.17238 5.21190 5.50815 5.57642 5.61472 5.98546 6.05061 6.27724 6.46546 6.88571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.116 4.116 3 Si 0.779 3.221 4 C 0.017 3.983 5 C -0.796 4.796 6 S 2.728 3.272 7 O -0.970 6.970 8 O -0.985 6.985 9 N -1.094 6.094 10 C 0.138 3.862 11 C -0.082 4.082 12 C 0.093 3.907 13 O -0.587 6.587 14 C -0.117 4.117 15 C 0.062 3.938 16 H 0.103 0.897 17 O -0.383 6.383 18 C 0.102 3.898 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.137 4.137 26 S 0.209 5.791 27 C -0.144 4.144 28 C -0.177 4.177 29 H 0.386 0.614 30 H 0.136 0.864 31 H -0.257 1.257 32 H -0.298 1.298 33 H 0.427 0.573 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.131 0.869 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.210 0.790 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 2.067 -4.090 5.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.226 4.226 3 Si 0.680 3.320 4 C -0.002 4.002 5 C -0.999 4.999 6 S 2.817 3.183 7 O -0.961 6.961 8 O -0.975 6.975 9 N -0.857 5.857 10 C 0.013 3.987 11 C -0.084 4.084 12 C 0.016 3.984 13 O -0.395 6.395 14 C -0.155 4.155 15 C 0.004 3.996 16 H 0.121 0.879 17 O -0.303 6.303 18 C 0.026 3.974 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.152 4.152 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.131 4.131 25 C -0.175 4.175 26 S 0.476 5.524 27 C -0.282 4.282 28 C -0.206 4.206 29 H 0.235 0.765 30 H 0.153 0.847 31 H -0.182 1.182 32 H -0.226 1.226 33 H 0.264 0.736 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.246 0.754 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.149 0.851 48 H 0.096 0.904 49 H 0.108 0.892 50 H 0.227 0.773 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.474 1.235 -4.372 4.776 hybrid contribution -1.801 0.958 0.483 2.096 sum -3.275 2.194 -3.890 5.538 Atomic orbital electron populations 1.86661 1.16781 1.80310 1.49898 1.25720 0.84803 1.13983 0.98080 0.93735 0.90137 0.70367 0.77715 1.19257 0.93243 0.91055 0.96604 1.35468 1.28266 1.14481 1.21704 1.00564 0.72753 0.72466 0.72552 1.93525 1.86156 1.75713 1.40676 1.93580 1.75818 1.41981 1.86165 1.55079 1.24870 1.74897 1.30874 1.21212 0.95848 0.96929 0.84751 1.21756 0.93191 0.96225 0.97258 1.21983 0.93814 0.86178 0.96455 1.86437 1.65250 1.29696 1.58126 1.23248 0.94611 0.97165 1.00460 1.23823 0.92535 0.93020 0.90197 0.87881 1.88014 1.31938 1.49593 1.60708 1.21422 0.84622 0.95342 0.96033 1.19835 0.98869 0.97657 0.94300 1.21307 0.97081 0.94213 1.00471 1.21467 1.00378 0.99847 0.93506 1.21535 0.98157 0.98144 0.96448 1.21466 0.97839 0.95284 1.00593 1.21307 0.99186 0.99887 0.92717 1.23544 0.96176 1.01603 0.96206 1.84483 1.55687 1.06782 1.05482 1.26616 1.01783 0.95610 1.04215 1.20538 1.04043 1.03084 0.92966 0.76479 0.84698 1.18181 1.22555 0.73618 0.90724 0.90718 0.92567 0.91571 0.75370 0.88605 0.89183 0.91568 0.91273 0.85005 0.84384 0.84356 0.84388 0.85109 0.90415 0.89211 0.77345 0.80702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.95 12.88 -148.98 -1.92 -2.87 16 2 C -0.12 -0.24 1.97 71.24 0.14 -0.10 16 3 Si 0.78 -1.58 30.46 68.60 2.09 0.51 16 4 C 0.02 0.02 5.13 -20.92 -0.11 -0.09 16 5 C -0.80 -3.21 6.54 66.72 0.44 -2.77 16 6 S 2.73 21.04 5.76 -56.49 -0.33 20.72 16 7 O -0.97 -11.49 14.92 -128.00 -1.91 -13.40 16 8 O -0.99 -13.80 17.38 -128.00 -2.22 -16.02 16 9 N -1.09 -1.87 5.79 -187.49 -1.08 -2.95 16 10 C 0.14 0.11 5.41 86.38 0.47 0.58 16 11 C -0.08 0.17 0.72 -51.56 -0.04 0.14 16 12 C 0.09 -0.27 6.21 71.98 0.45 0.17 16 13 O -0.59 -0.34 12.92 -148.98 -1.92 -2.26 16 14 C -0.12 0.41 6.63 31.12 0.21 0.62 16 15 C 0.06 -0.16 3.94 31.12 0.12 -0.04 16 16 H 0.10 -0.59 7.36 -2.39 -0.02 -0.61 16 17 O -0.38 -0.76 10.34 -148.98 -1.54 -2.30 16 18 C 0.10 -0.03 5.91 71.24 0.42 0.39 16 19 C -0.11 -0.28 5.51 -19.87 -0.11 -0.39 16 20 C -0.11 -0.25 9.70 22.27 0.22 -0.03 16 21 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 22 C -0.12 -0.15 10.05 22.27 0.22 0.07 16 23 C -0.13 -0.20 10.05 22.27 0.22 0.02 16 24 C -0.11 -0.27 9.70 22.27 0.22 -0.05 16 25 C -0.14 0.23 7.07 31.21 0.22 0.45 16 26 S 0.21 0.19 23.21 -56.49 -1.31 -1.12 16 27 C -0.14 0.66 11.23 66.72 0.75 1.41 16 28 C -0.18 0.59 8.74 21.21 0.19 0.78 16 29 H 0.39 -2.00 8.70 -74.06 -0.64 -2.65 16 30 H 0.14 0.80 5.65 -2.39 -0.01 0.78 16 31 H -0.26 0.52 6.80 99.48 0.68 1.19 16 32 H -0.30 -1.75 7.11 99.48 0.71 -1.04 16 33 H 0.43 -0.51 8.33 -96.74 -0.81 -1.31 16 34 H 0.07 0.35 7.21 -2.39 -0.02 0.34 16 35 H 0.07 -0.10 8.06 -2.39 -0.02 -0.12 16 36 H 0.06 -0.22 8.13 -2.39 -0.02 -0.24 16 37 H 0.07 -0.42 7.32 -2.39 -0.02 -0.44 16 38 H 0.40 -2.70 9.12 -74.06 -0.68 -3.37 16 39 H 0.10 -0.20 8.10 -2.39 -0.02 -0.22 16 40 H 0.09 -0.52 8.10 -2.39 -0.02 -0.54 16 41 H 0.07 -0.15 8.09 -2.39 -0.02 -0.17 16 42 H 0.07 -0.21 8.08 -2.38 -0.02 -0.22 16 43 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 44 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 45 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 46 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 47 H 0.13 -0.04 8.06 -2.91 -0.02 -0.07 16 48 H 0.08 -0.10 8.11 -2.39 -0.02 -0.12 16 49 H 0.09 -0.05 8.04 -2.39 -0.02 -0.06 16 50 H 0.21 -2.35 8.06 -2.91 -0.02 -2.38 16 51 H 0.18 -1.36 5.53 -2.91 -0.02 -1.38 16 Total: 0.00 -25.35 444.39 -7.02 -32.37 By element: Atomic # 1 Polarization: -12.72 SS G_CDS: -1.12 Total: -13.84 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 4.25 Total: 1.18 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -1.08 Total: -2.95 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -9.52 Total: -36.86 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: 2.09 Total: 0.51 kcal Atomic # 16 Polarization: 21.24 SS G_CDS: -1.64 Total: 19.60 kcal Total: -25.35 -7.02 -32.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15111640_13652106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.425 kcal (2) G-P(sol) polarization free energy of solvation -25.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds