Wall clock time and date at job start Mon Mar 8 2021 09:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47353 * 2 1 4 4 C 1.34230 * 116.99799 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00209 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99515 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47229 * 60.00167 * 6 4 3 8 8 C 1.53006 * 109.47120 * 180.02562 * 6 4 3 9 9 C 1.52993 * 109.47308 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47187 * 300.00313 * 9 8 6 11 11 F 1.39904 * 109.46949 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46965 * 299.99669 * 10 9 8 13 13 S 1.81401 * 109.47009 * 180.02562 * 12 10 9 14 14 O 1.42096 * 110.54194 * 285.43531 * 13 12 10 15 15 O 1.42102 * 110.54218 * 62.19007 * 13 12 10 16 16 O 1.52197 * 104.44882 * 173.81456 * 13 12 10 17 17 C 1.35921 * 114.00339 * 76.32025 * 16 13 12 18 18 C 1.38703 * 120.03434 * 97.21428 * 17 16 13 19 19 C 1.50696 * 120.01792 * 359.97438 * 18 17 16 20 20 O 1.42898 * 109.46995 * 284.11872 * 19 18 17 21 21 Si 1.86296 * 109.47346 * 164.11577 * 19 18 17 22 22 C 1.38186 * 119.97057 * 179.72193 * 18 17 16 23 23 C 1.38318 * 120.04937 * 0.55746 * 22 18 17 24 24 Cl 1.73601 * 119.95960 * 179.70211 * 23 22 18 25 25 C 1.38478 * 120.07898 * 359.71594 * 23 22 18 26 26 Br 1.89105 * 119.98778 * 179.97438 * 25 23 22 27 27 C 1.38206 * 120.02282 * 0.02562 * 25 23 22 28 28 C 1.52994 * 109.47251 * 59.99979 * 10 9 8 29 29 C 1.52993 * 109.47042 * 300.00109 * 28 10 9 30 30 H 1.08995 * 109.46773 * 299.99947 * 1 2 3 31 31 H 1.09008 * 109.47130 * 59.99349 * 1 2 3 32 32 H 1.08996 * 109.47205 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46831 * 240.00193 * 2 1 3 34 34 H 1.08995 * 109.47138 * 120.00995 * 2 1 3 35 35 H 1.09002 * 109.46324 * 59.99705 * 8 6 4 36 36 H 1.09001 * 109.47051 * 300.00695 * 8 6 4 37 37 H 1.09006 * 109.47314 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47006 * 60.00083 * 9 8 6 39 39 H 1.09003 * 109.47439 * 300.00474 * 12 10 9 40 40 H 1.08995 * 109.47153 * 60.00412 * 12 10 9 41 41 H 1.09001 * 109.46630 * 44.11422 * 19 18 17 42 42 H 0.96698 * 113.99998 * 179.97438 * 20 19 18 43 43 H 1.48489 * 110.00249 * 298.68059 * 21 19 18 44 44 H 1.48498 * 110.00029 * 60.00432 * 21 19 18 45 45 H 1.07996 * 119.97271 * 180.27418 * 22 18 17 46 46 H 1.07996 * 120.02389 * 180.02562 * 27 25 23 47 47 H 1.09000 * 109.47286 * 60.00018 * 28 10 9 48 48 H 1.09002 * 109.46961 * 180.02562 * 28 10 9 49 49 H 1.08999 * 109.47038 * 299.99524 * 29 28 10 50 50 H 1.09002 * 109.47416 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 1 3.5846 3.4691 0.8912 8 6 5.4488 2.8572 0.0010 9 6 6.0336 4.2709 0.0010 10 6 5.5619 5.0180 -1.2481 11 9 6.0971 6.3106 -1.2484 12 6 6.0334 4.2711 -2.4975 13 16 5.4748 5.1572 -3.9785 14 8 4.0821 4.9609 -4.1814 15 8 6.0462 6.4573 -4.0269 16 8 6.1306 4.4157 -5.1346 17 6 5.5370 3.2316 -5.4398 18 6 4.6140 3.1637 -6.4729 19 6 4.2681 4.4030 -7.2575 20 8 3.4051 5.2342 -6.4790 21 14 3.4055 3.9181 -8.8360 22 6 4.0156 1.9581 -6.7859 23 6 4.3277 0.8215 -6.0621 24 17 3.5688 -0.6903 -6.4522 25 6 5.2447 0.8881 -5.0266 26 35 5.6690 -0.6674 -4.0383 27 6 5.8490 2.0911 -4.7144 28 6 4.0340 5.0981 -1.2480 29 6 3.4492 3.6843 -1.2480 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8898 35 1 5.7845 2.3254 -0.8892 36 1 5.7847 2.3245 0.8907 37 1 7.1221 4.2139 0.0005 38 1 5.6977 4.8030 0.8910 39 1 7.1219 4.2139 -2.4976 40 1 5.6167 3.2639 -2.4975 41 1 5.1811 4.9489 -7.4953 42 1 3.1414 6.0520 -6.9226 43 1 4.3043 3.0796 -9.6691 44 1 2.1591 3.1729 -8.5254 45 1 3.3002 1.9043 -7.5931 46 1 6.5645 2.1430 -3.9070 47 1 3.6982 5.6302 -0.3579 48 1 3.6980 5.6299 -2.1382 49 1 3.7850 3.1523 -2.1380 50 1 2.3607 3.7414 -1.2483 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15163264_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:53 Heat of formation + Delta-G solvation = -225.064009 kcal Electronic energy + Delta-G solvation = -45433.136428 eV Core-core repulsion = 39542.660730 eV Total energy + Delta-G solvation = -5890.475699 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 515.004 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -49.08277 -42.82422 -41.85191 -40.05823 -39.64110 -38.48094 -38.11479 -37.67167 -37.62068 -37.29492 -34.34249 -33.58579 -32.53307 -32.12353 -32.08322 -31.34898 -29.32694 -26.96016 -25.56299 -25.20082 -24.20597 -23.65126 -23.46665 -22.12763 -21.76955 -20.50148 -19.68398 -19.28768 -19.02126 -18.77079 -18.44784 -18.16756 -17.97199 -17.71107 -17.59195 -17.30486 -16.78938 -16.61082 -16.19636 -16.02193 -15.66649 -15.60335 -15.43212 -15.20436 -15.06055 -14.94386 -14.78734 -14.49693 -14.43389 -14.16894 -14.08133 -13.89487 -13.84131 -13.71016 -13.56670 -13.54211 -13.35006 -13.24930 -13.10348 -12.96715 -12.90265 -12.81388 -12.76261 -12.72962 -12.51393 -12.42085 -12.30821 -12.14209 -12.02753 -11.95686 -11.63807 -11.54910 -11.52512 -11.39265 -11.17863 -10.63413 -10.41570 -10.19793 -5.02985 -1.47072 -0.81732 -0.67485 -0.09337 0.46235 0.76955 1.09388 1.11510 1.48213 1.60868 1.61937 1.82407 2.24768 2.61556 2.79292 2.86040 2.92404 3.02066 3.06363 3.18923 3.35210 3.35854 3.45495 3.58360 3.63495 3.73165 3.78683 3.86754 3.91188 3.96733 3.98882 4.00349 4.03072 4.12297 4.16436 4.18609 4.22360 4.28605 4.30873 4.48494 4.50812 4.61767 4.73891 4.80064 4.84021 4.85188 4.88042 4.91165 4.97191 5.08125 5.12225 5.19232 5.44464 6.65430 6.80352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.528 6.528 6 C -0.083 4.083 7 H 0.140 0.860 8 C -0.106 4.106 9 C -0.123 4.123 10 C 0.134 3.866 11 F -0.206 7.206 12 C -0.697 4.697 13 S 2.584 3.416 14 O -0.911 6.911 15 O -0.947 6.947 16 O -0.661 6.661 17 C 0.095 3.905 18 C -0.030 4.030 19 C -0.118 4.118 20 O -0.534 6.534 21 Si 0.781 3.219 22 C -0.097 4.097 23 C -0.001 4.001 24 Cl -0.020 7.020 25 C -0.075 4.075 26 Br 0.009 6.991 27 C -0.101 4.101 28 C -0.168 4.168 29 C -0.106 4.106 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.093 0.907 42 H 0.400 0.600 43 H -0.273 1.273 44 H -0.268 1.268 45 H 0.163 0.837 46 H 0.188 0.812 47 H 0.121 0.879 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -0.467 -0.155 2.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.102 4.102 7 H 0.158 0.842 8 C -0.144 4.144 9 C -0.161 4.161 10 C 0.115 3.885 11 F -0.186 7.186 12 C -0.824 4.824 13 S 2.680 3.320 14 O -0.909 6.909 15 O -0.946 6.946 16 O -0.619 6.619 17 C 0.052 3.948 18 C -0.033 4.033 19 C -0.226 4.226 20 O -0.343 6.343 21 Si 0.682 3.318 22 C -0.116 4.116 23 C -0.030 4.030 24 Cl 0.010 6.990 25 C -0.156 4.156 26 Br 0.096 6.904 27 C -0.123 4.123 28 C -0.206 4.206 29 C -0.144 4.144 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.198 0.802 40 H 0.187 0.813 41 H 0.111 0.889 42 H 0.251 0.749 43 H -0.199 1.199 44 H -0.194 1.194 45 H 0.180 0.820 46 H 0.205 0.795 47 H 0.140 0.860 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.376 -2.022 -0.397 3.145 hybrid contribution 0.835 -0.304 0.566 1.054 sum -1.541 -2.326 0.169 2.795 Atomic orbital electron populations 1.21826 0.90973 1.04145 1.03706 1.23213 0.96737 0.79442 1.02424 1.86515 1.24383 1.33313 1.83488 1.24088 0.80653 0.93048 0.71480 1.90677 1.60871 1.44004 1.46158 1.21320 0.96810 0.88935 1.03094 0.84228 1.21523 0.91367 0.96467 1.05032 1.22078 1.03259 0.95088 0.95661 1.20664 0.94422 0.78269 0.95195 1.92983 1.87951 1.40162 1.97495 1.31808 1.16962 1.16282 1.17310 1.05891 0.74989 0.75198 0.75956 1.93768 1.30668 1.84887 1.81584 1.93643 1.79413 1.36132 1.85370 1.85744 1.69470 1.39671 1.67016 1.17735 0.96370 0.81670 0.99052 1.19807 0.93182 0.95720 0.94585 1.25168 1.00889 0.92203 1.04327 1.86767 1.66786 1.36632 1.44081 0.93575 0.77982 0.85460 0.74770 1.21027 1.00164 0.89835 1.00576 1.20928 0.96285 0.89785 0.96049 1.98447 1.79578 1.28043 1.92930 1.21683 1.00485 0.94944 0.98468 1.96955 1.92781 1.30764 1.69940 1.21604 1.00122 0.89096 1.01437 1.22574 0.91684 0.99407 1.06890 1.21494 1.03237 0.93588 0.96057 0.91135 0.91448 0.88734 0.91591 0.91257 0.90490 0.89035 0.88098 0.87633 0.80161 0.81308 0.88897 0.74886 1.19930 1.19423 0.81975 0.79532 0.86030 0.90237 0.91541 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 10.29 71.98 0.74 1.25 16 2 C 0.06 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.84 10.12 -51.42 -0.52 -1.37 16 4 C 0.46 1.02 7.25 71.24 0.52 1.53 16 5 O -0.53 -3.81 15.73 21.99 0.35 -3.47 16 6 C -0.08 0.32 2.63 -11.54 -0.03 0.29 16 7 H 0.14 -1.15 8.14 -2.39 -0.02 -1.17 16 8 C -0.11 0.54 4.22 30.59 0.13 0.67 16 9 C -0.12 0.75 5.19 30.59 0.16 0.91 16 10 C 0.13 -0.18 1.10 -10.79 -0.01 -0.20 16 11 F -0.21 -0.99 15.85 44.97 0.71 -0.27 16 12 C -0.70 1.53 3.65 71.98 0.26 1.80 16 13 S 2.58 14.21 4.38 -56.49 -0.25 13.96 16 14 O -0.91 -6.43 11.83 -115.17 -1.36 -7.79 16 15 O -0.95 -12.54 17.31 -118.57 -2.05 -14.59 16 16 O -0.66 -3.11 9.37 -61.76 -0.58 -3.69 16 17 C 0.09 0.34 4.65 22.50 0.10 0.45 16 18 C -0.03 -0.12 4.97 -19.77 -0.10 -0.22 16 19 C -0.12 -0.07 2.37 71.23 0.17 0.10 16 20 O -0.53 -0.92 9.96 -126.92 -1.26 -2.18 16 21 Si 0.78 -2.93 30.22 68.60 2.07 -0.86 16 22 C -0.10 -0.29 8.44 22.28 0.19 -0.11 16 23 C 0.00 0.00 6.32 22.35 0.14 0.14 16 24 Cl -0.02 -0.05 27.73 -2.72 -0.08 -0.12 16 25 C -0.07 -0.14 6.23 22.32 0.14 0.00 16 26 Br 0.01 0.01 32.52 -20.37 -0.66 -0.65 16 27 C -0.10 -0.02 8.26 22.38 0.18 0.17 16 28 C -0.17 0.36 4.75 30.59 0.15 0.50 16 29 C -0.11 0.30 4.86 30.59 0.15 0.45 16 30 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 32 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.07 0.09 8.13 -2.38 -0.02 0.07 16 34 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 35 H 0.08 -0.37 6.39 -2.39 -0.02 -0.38 16 36 H 0.09 -0.45 8.10 -2.39 -0.02 -0.47 16 37 H 0.10 -0.78 8.14 -2.38 -0.02 -0.80 16 38 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.18 -1.40 8.14 -2.39 -0.02 -1.42 16 40 H 0.17 -0.97 3.13 -2.39 -0.01 -0.98 16 41 H 0.09 -0.14 7.80 -2.39 -0.02 -0.15 16 42 H 0.40 -3.20 8.74 -74.06 -0.65 -3.84 16 43 H -0.27 -0.11 7.11 99.48 0.71 0.59 16 44 H -0.27 -0.16 6.73 99.48 0.67 0.51 16 45 H 0.16 0.16 4.91 -2.91 -0.01 0.14 16 46 H 0.19 -1.17 6.77 -2.91 -0.02 -1.19 16 47 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.08 0.08 5.76 -2.39 -0.01 0.06 16 49 H 0.07 -0.12 6.43 -2.39 -0.02 -0.13 16 50 H 0.10 -0.31 8.11 -2.39 -0.02 -0.33 16 Total: 0.00 -25.14 437.76 0.09 -25.05 By element: Atomic # 1 Polarization: -12.62 SS G_CDS: 0.39 Total: -12.23 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 3.33 Total: 8.21 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -5.43 Total: -33.08 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.71 Total: -0.27 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.07 Total: -0.86 kcal Atomic # 16 Polarization: 14.21 SS G_CDS: -0.25 Total: 13.96 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.12 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.66 Total: -0.65 kcal Total: -25.14 0.09 -25.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15163264_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.017 kcal (2) G-P(sol) polarization free energy of solvation -25.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds