Wall clock time and date at job start Mon Mar 8 2021 09:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45207 * 109.47277 * 2 1 4 4 C 1.34223 * 117.00219 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99682 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00388 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46912 * 59.99452 * 6 4 3 8 8 C 1.52994 * 109.47221 * 179.97438 * 6 4 3 9 9 C 1.53009 * 109.46927 * 179.97438 * 8 6 4 10 10 C 1.52992 * 109.47165 * 300.00172 * 9 8 6 11 11 F 1.39895 * 109.47492 * 299.99989 * 10 9 8 12 12 C 1.53003 * 109.47123 * 179.97438 * 10 9 8 13 13 S 1.81398 * 109.47163 * 185.00034 * 12 10 9 14 14 O 1.42101 * 110.54491 * 68.38233 * 13 12 10 15 15 O 1.42105 * 110.54475 * 291.62589 * 13 12 10 16 16 O 1.52202 * 104.44706 * 180.02562 * 13 12 10 17 17 C 1.35928 * 114.00345 * 75.00377 * 16 13 12 18 18 C 1.38705 * 120.03960 * 89.99510 * 17 16 13 19 19 C 1.50702 * 120.00961 * 359.75189 * 18 17 16 20 20 O 1.42900 * 109.47285 * 74.99870 * 19 18 17 21 21 Si 1.86306 * 109.46648 * 194.99881 * 19 18 17 22 22 C 1.38173 * 119.97570 * 179.72952 * 18 17 16 23 23 C 1.38323 * 120.05042 * 359.97438 * 22 18 17 24 24 Cl 1.73601 * 119.96002 * 180.02562 * 23 22 18 25 25 C 1.38472 * 120.08015 * 0.02562 * 23 22 18 26 26 Br 1.89095 * 119.99165 * 179.97438 * 25 23 22 27 27 C 1.38209 * 120.02281 * 0.02562 * 25 23 22 28 28 C 1.53005 * 109.47066 * 60.00174 * 10 9 8 29 29 C 1.52997 * 109.47060 * 299.99635 * 28 10 9 30 30 H 1.08999 * 109.47304 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46859 * 300.00567 * 1 2 3 32 32 H 1.08999 * 109.47516 * 59.99765 * 1 2 3 33 33 H 1.08994 * 109.47524 * 239.99392 * 2 1 3 34 34 H 1.09004 * 109.47323 * 119.99530 * 2 1 3 35 35 H 1.09000 * 109.47140 * 60.00185 * 8 6 4 36 36 H 1.08993 * 109.47563 * 300.00007 * 8 6 4 37 37 H 1.09000 * 109.47138 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46776 * 60.00309 * 9 8 6 39 39 H 1.09008 * 109.46648 * 65.00266 * 12 10 9 40 40 H 1.08999 * 109.47399 * 305.00725 * 12 10 9 41 41 H 1.09002 * 109.47278 * 314.99477 * 19 18 17 42 42 H 0.96693 * 114.00024 * 299.99977 * 20 19 18 43 43 H 1.48501 * 109.99988 * 298.67941 * 21 19 18 44 44 H 1.48499 * 110.00094 * 60.00350 * 21 19 18 45 45 H 1.08001 * 119.97350 * 179.97438 * 22 18 17 46 46 H 1.07999 * 120.03134 * 180.02562 * 27 25 23 47 47 H 1.08993 * 109.47376 * 59.99932 * 28 10 9 48 48 H 1.09001 * 109.47022 * 179.97438 * 28 10 9 49 49 H 1.09006 * 109.47382 * 300.00265 * 29 28 10 50 50 H 1.09000 * 109.47211 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4699 0.8888 8 6 5.4486 2.8573 -0.0010 9 6 6.0334 4.2712 -0.0023 10 6 5.5619 5.0170 -1.2522 11 9 5.9930 4.3331 -2.3938 12 6 6.1462 6.4311 -1.2531 13 16 5.4708 7.3635 -2.6549 14 8 4.0854 7.6159 -2.4648 15 8 5.9586 6.8407 -3.8830 16 8 6.1210 8.7354 -2.5470 17 6 7.4240 8.7617 -2.9331 18 6 7.7512 9.0239 -4.2553 19 6 6.6617 9.2743 -5.2660 20 8 6.1243 10.5842 -5.0724 21 14 7.3670 9.1402 -6.9852 22 6 9.0764 9.0559 -4.6452 23 6 10.0770 8.8271 -3.7180 24 17 11.7412 8.8685 -4.2103 25 6 9.7528 8.5652 -2.3975 26 35 11.1227 8.2521 -1.1321 27 6 8.4283 8.5314 -2.0042 28 6 4.0339 5.0971 -1.2522 29 6 3.4491 3.6833 -1.2510 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.7846 2.3248 -0.8908 36 1 5.7845 2.3256 0.8891 37 1 7.1219 4.2142 -0.0027 38 1 5.6975 4.8041 0.8872 39 1 7.2312 6.3757 -1.3424 40 1 5.8835 6.9334 -0.3221 41 1 5.8712 8.5347 -5.1389 42 1 5.7392 10.7258 -4.1968 43 1 8.4241 10.1645 -7.1818 44 1 7.9291 7.7825 -7.1991 45 1 9.3311 9.2596 -5.6748 46 1 8.1753 8.3275 -0.9742 47 1 3.6980 5.6300 -0.3628 48 1 3.6980 5.6289 -2.1424 49 1 3.7851 3.1503 -2.1406 50 1 2.3606 3.7404 -1.2515 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15163264_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:57 Heat of formation + Delta-G solvation = -235.265457 kcal Electronic energy + Delta-G solvation = -43225.351273 eV Core-core repulsion = 37334.433207 eV Total energy + Delta-G solvation = -5890.918067 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 515.004 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.11436 -42.94539 -41.79856 -40.08148 -39.15255 -38.64812 -38.23655 -37.73242 -37.69214 -37.46359 -34.38354 -34.14432 -32.65134 -32.13797 -32.08170 -31.27801 -29.15206 -27.08388 -25.49493 -24.98166 -24.21563 -23.69649 -23.54784 -22.11526 -21.75748 -20.88703 -19.88927 -19.43508 -19.15316 -18.81287 -18.67810 -17.96042 -17.84128 -17.72616 -17.60170 -17.24976 -16.84417 -16.66721 -16.30510 -16.12085 -15.92880 -15.67614 -15.34314 -15.20839 -15.05081 -14.93389 -14.87711 -14.58069 -14.41466 -14.20550 -14.07322 -13.95915 -13.75873 -13.72740 -13.59590 -13.56481 -13.40005 -13.26646 -13.21410 -13.17539 -12.94498 -12.93116 -12.67390 -12.62496 -12.50332 -12.38942 -12.21791 -12.19873 -12.00917 -11.77154 -11.67969 -11.57498 -11.50574 -11.38072 -11.32006 -11.16482 -10.60329 -10.19600 -4.97873 -1.56018 -0.81918 -0.68229 -0.07538 0.44272 0.69111 1.05414 1.14433 1.47543 1.58793 1.60015 1.71336 2.13040 2.47115 2.72633 2.89213 2.92895 3.02730 3.09336 3.27657 3.31259 3.40041 3.50184 3.56411 3.60639 3.72518 3.76670 3.85267 3.94459 3.97106 3.99357 4.00782 4.02177 4.09865 4.13514 4.19437 4.25897 4.28144 4.29604 4.44293 4.50564 4.59015 4.76471 4.78921 4.82154 4.86398 4.87847 4.91963 4.98560 5.07145 5.12006 5.22837 5.41740 6.33564 6.61962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.149 0.851 8 C -0.110 4.110 9 C -0.123 4.123 10 C 0.126 3.874 11 F -0.211 7.211 12 C -0.671 4.671 13 S 2.574 3.426 14 O -0.932 6.932 15 O -0.962 6.962 16 O -0.652 6.652 17 C 0.076 3.924 18 C -0.067 4.067 19 C -0.121 4.121 20 O -0.532 6.532 21 Si 0.801 3.199 22 C -0.102 4.102 23 C 0.003 3.997 24 Cl -0.020 7.020 25 C -0.080 4.080 26 Br 0.014 6.986 27 C -0.077 4.077 28 C -0.177 4.177 29 C -0.110 4.110 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.211 0.789 41 H 0.089 0.911 42 H 0.377 0.623 43 H -0.256 1.256 44 H -0.257 1.257 45 H 0.159 0.841 46 H 0.204 0.796 47 H 0.137 0.863 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 1.707 5.465 5.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.096 4.096 7 H 0.166 0.834 8 C -0.148 4.148 9 C -0.161 4.161 10 C 0.106 3.894 11 F -0.191 7.191 12 C -0.800 4.800 13 S 2.673 3.327 14 O -0.930 6.930 15 O -0.960 6.960 16 O -0.610 6.610 17 C 0.033 3.967 18 C -0.070 4.070 19 C -0.228 4.228 20 O -0.338 6.338 21 Si 0.698 3.302 22 C -0.121 4.121 23 C -0.027 4.027 24 Cl 0.010 6.990 25 C -0.161 4.161 26 Br 0.100 6.900 27 C -0.098 4.098 28 C -0.215 4.215 29 C -0.148 4.148 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.188 0.812 40 H 0.228 0.772 41 H 0.107 0.893 42 H 0.226 0.774 43 H -0.181 1.181 44 H -0.181 1.181 45 H 0.176 0.824 46 H 0.221 0.779 47 H 0.156 0.844 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.324 1.545 4.280 4.562 hybrid contribution 0.148 -0.832 1.449 1.678 sum -0.177 0.713 5.730 5.777 Atomic orbital electron populations 1.21824 0.90610 1.04251 1.03820 1.23245 0.96971 0.79407 1.02375 1.86511 1.24194 1.33387 1.83436 1.24269 0.80608 0.93273 0.71068 1.90678 1.61167 1.44469 1.46686 1.21296 0.96504 0.88578 1.03229 0.83374 1.21469 0.91771 0.97619 1.03962 1.22175 1.03193 0.94535 0.96212 1.20810 0.94996 0.87945 0.85603 1.92951 1.91332 1.81633 1.53212 1.31511 1.15915 1.08753 1.23832 1.06076 0.75293 0.73865 0.77462 1.93672 1.29830 1.82287 1.87192 1.93657 1.80723 1.79181 1.42436 1.85731 1.30458 1.58231 1.86613 1.17788 0.78680 1.07583 0.92629 1.20728 0.95960 0.96089 0.94254 1.25935 0.97058 0.88665 1.11125 1.86744 1.79053 1.28728 1.39289 0.91870 0.81307 0.78848 0.78187 1.20984 0.90185 1.00273 1.00633 1.21011 0.88222 1.00358 0.93075 1.98453 1.13232 1.96076 1.91251 1.21737 0.94831 1.06522 0.92979 1.96939 1.46337 1.94390 1.52329 1.21634 0.88797 0.97465 1.01920 1.22813 0.92009 0.99254 1.07381 1.21461 1.02920 0.94155 0.96237 0.88650 0.91001 0.91315 0.91790 0.91271 0.92535 0.89413 0.88192 0.85262 0.81192 0.77166 0.89297 0.77366 1.18105 1.18149 0.82390 0.77944 0.84444 0.90491 0.92184 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.27 16 2 C 0.05 0.06 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.09 10.12 -51.34 -0.52 -1.61 16 4 C 0.46 1.88 7.25 71.24 0.52 2.40 16 5 O -0.54 -5.87 15.73 21.95 0.35 -5.53 16 6 C -0.08 0.25 2.63 -11.54 -0.03 0.22 16 7 H 0.15 -1.46 8.14 -2.39 -0.02 -1.48 16 8 C -0.11 0.33 4.37 30.59 0.13 0.46 16 9 C -0.12 1.09 5.00 30.59 0.15 1.24 16 10 C 0.13 -0.56 0.89 -10.79 -0.01 -0.57 16 11 F -0.21 -0.76 15.33 44.97 0.69 -0.07 16 12 C -0.67 5.98 4.79 71.98 0.34 6.33 16 13 S 2.57 1.39 4.17 -56.49 -0.24 1.16 16 14 O -0.93 -4.45 15.64 -118.57 -1.85 -6.30 16 15 O -0.96 -6.58 13.92 -118.57 -1.65 -8.23 16 16 O -0.65 0.75 9.04 -61.83 -0.56 0.19 16 17 C 0.08 0.01 4.74 22.50 0.11 0.11 16 18 C -0.07 -0.25 4.68 -19.77 -0.09 -0.34 16 19 C -0.12 -0.52 2.19 71.24 0.16 -0.37 16 20 O -0.53 -1.94 12.65 -148.98 -1.89 -3.82 16 21 Si 0.80 1.39 30.40 68.60 2.09 3.47 16 22 C -0.10 -0.32 8.44 22.27 0.19 -0.13 16 23 C 0.00 0.01 6.32 22.35 0.14 0.15 16 24 Cl -0.02 -0.03 27.73 -2.72 -0.08 -0.11 16 25 C -0.08 0.11 6.22 22.32 0.14 0.25 16 26 Br 0.01 -0.04 32.52 -20.37 -0.66 -0.70 16 27 C -0.08 0.34 8.21 22.38 0.18 0.53 16 28 C -0.18 0.74 4.32 30.60 0.13 0.87 16 29 C -0.11 0.26 5.01 30.59 0.15 0.41 16 30 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.06 0.15 8.13 -2.39 -0.02 0.13 16 34 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 35 H 0.06 0.16 7.76 -2.39 -0.02 0.14 16 36 H 0.09 -0.28 8.10 -2.39 -0.02 -0.30 16 37 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H 0.13 -2.06 8.14 -2.39 -0.02 -2.08 16 39 H 0.17 -2.15 6.62 -2.39 -0.02 -2.16 16 40 H 0.21 -3.95 8.14 -2.39 -0.02 -3.97 16 41 H 0.09 0.45 5.41 -2.39 -0.01 0.44 16 42 H 0.38 -0.28 8.59 -74.06 -0.64 -0.92 16 43 H -0.26 -0.88 6.81 99.48 0.68 -0.21 16 44 H -0.26 -1.24 7.11 99.48 0.71 -0.54 16 45 H 0.16 0.34 4.93 -2.91 -0.01 0.32 16 46 H 0.20 -2.71 7.51 -2.91 -0.02 -2.73 16 47 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16 48 H 0.08 -0.03 5.40 -2.39 -0.01 -0.04 16 49 H 0.06 0.11 7.80 -2.38 -0.02 0.09 16 50 H 0.10 -0.39 8.11 -2.39 -0.02 -0.41 16 Total: 0.00 -25.11 444.34 -0.52 -25.63 By element: Atomic # 1 Polarization: -17.80 SS G_CDS: 0.40 Total: -17.40 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 3.40 Total: 13.33 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -6.12 Total: -25.31 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 0.69 Total: -0.07 kcal Atomic # 14 Polarization: 1.39 SS G_CDS: 2.09 Total: 3.47 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -0.24 Total: 1.16 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -0.66 Total: -0.70 kcal Total: -25.11 -0.52 -25.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15163264_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.635 kcal (2) G-P(sol) polarization free energy of solvation -25.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds