Wall clock time and date at job start Mon Mar 8 2021 09:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45193 * 109.47205 * 2 1 4 4 C 1.34238 * 117.00030 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00255 * 179.97438 * 4 3 2 7 7 H 1.09000 * 112.85167 * 311.20129 * 6 4 3 8 8 C 1.53963 * 113.74411 * 82.40325 * 6 4 3 9 9 C 1.53774 * 87.02046 * 139.94530 * 8 6 4 10 10 F 1.39898 * 113.61489 * 89.22982 * 9 8 6 11 11 C 1.52995 * 113.61400 * 220.04880 * 9 8 6 12 12 S 1.81395 * 109.47270 * 284.13660 * 11 9 8 13 13 O 1.42105 * 110.54367 * 68.37555 * 12 11 9 14 14 O 1.42099 * 110.54250 * 291.62135 * 12 11 9 15 15 O 1.52203 * 104.45344 * 180.02562 * 12 11 9 16 16 C 1.35920 * 114.00026 * 74.50508 * 15 12 11 17 17 C 1.38700 * 120.04090 * 260.00924 * 16 15 12 18 18 C 1.50706 * 120.01364 * 0.04150 * 17 16 15 19 19 O 1.42898 * 109.47176 * 285.36762 * 18 17 16 20 20 Si 1.86295 * 109.47105 * 165.36558 * 18 17 16 21 21 C 1.38177 * 119.97848 * 180.02562 * 17 16 15 22 22 C 1.38327 * 120.04668 * 0.25539 * 21 17 16 23 23 Cl 1.73599 * 119.95853 * 179.72348 * 22 21 17 24 24 C 1.38467 * 120.07860 * 359.49003 * 22 21 17 25 25 Br 1.89104 * 119.98967 * 180.25810 * 24 22 21 26 26 C 1.38214 * 120.02545 * 0.50940 * 24 22 21 27 27 C 1.53778 * 113.61551 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47029 * 300.00281 * 1 2 3 29 29 H 1.09007 * 109.46816 * 59.99727 * 1 2 3 30 30 H 1.08992 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47029 * 239.99719 * 2 1 3 32 32 H 1.09006 * 109.46817 * 119.99724 * 2 1 3 33 33 H 1.08999 * 113.60792 * 25.42359 * 8 6 4 34 34 H 1.09002 * 113.66579 * 254.47557 * 8 6 4 35 35 H 1.09008 * 109.47379 * 164.13616 * 11 9 8 36 36 H 1.09004 * 109.47158 * 44.13595 * 11 9 8 37 37 H 1.09003 * 109.46548 * 45.36444 * 18 17 16 38 38 H 0.96706 * 113.99706 * 65.82080 * 19 18 17 39 39 H 1.48497 * 110.00351 * 300.00406 * 20 18 17 40 40 H 1.48498 * 109.99925 * 61.32108 * 20 18 17 41 41 H 1.07996 * 119.97443 * 179.97438 * 21 17 16 42 42 H 1.07990 * 120.02792 * 179.76890 * 26 24 22 43 43 H 1.08996 * 113.61572 * 105.38993 * 27 6 4 44 44 H 1.09000 * 113.68802 * 334.49266 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0000 7 1 3.4716 3.5809 -0.7564 8 6 3.9850 3.5821 1.3966 9 6 5.3561 4.1443 0.9859 10 9 5.2851 5.3940 0.3610 11 6 6.3977 4.0983 2.1056 12 16 6.0575 5.4182 3.3025 13 8 4.8526 5.1533 4.0079 14 8 6.3021 6.6922 2.7228 15 8 7.1486 5.2688 4.3531 16 6 8.3711 5.7014 3.9458 17 6 9.3220 4.7889 3.5133 18 6 9.0000 3.3168 3.4938 19 8 9.0156 2.8080 4.8290 20 14 10.2708 2.4167 2.4713 21 6 10.5645 5.2301 3.1001 22 6 10.8626 6.5806 3.1224 23 17 12.4269 7.1317 2.6095 24 6 9.9132 7.4939 3.5487 25 35 10.3210 9.3404 3.5713 26 6 8.6693 7.0562 3.9628 27 6 5.4583 2.9679 0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 4.0357 2.8581 2.2098 34 1 3.2289 4.3503 1.5589 35 1 7.3924 4.2390 1.6825 36 1 6.3495 3.1317 2.6071 37 1 8.0115 3.1669 3.0594 38 1 8.3191 3.1679 5.3952 39 1 10.2646 2.9366 1.0804 40 1 11.6185 2.5870 3.0711 41 1 11.3050 4.5195 2.7638 42 1 7.9301 7.7681 4.2988 43 1 5.8896 3.2411 -0.9629 44 1 5.9140 2.0761 0.4303 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15163264_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:28 Heat of formation + Delta-G solvation = -194.997038 kcal Electronic energy + Delta-G solvation = -38543.005850 eV Core-core repulsion = 32964.909191 eV Total energy + Delta-G solvation = -5578.096659 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 486.972 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.30784 -42.97883 -41.86982 -40.11872 -39.50447 -38.63105 -38.33390 -37.64767 -37.52913 -37.46660 -34.29520 -32.99120 -32.37845 -32.07483 -31.21930 -27.54038 -27.49572 -26.77855 -25.42074 -24.10661 -23.64736 -22.56483 -21.82005 -21.04631 -19.99335 -19.53922 -19.24909 -18.91831 -18.78769 -18.11717 -17.93839 -17.72705 -17.61966 -17.30766 -16.81321 -16.45203 -16.34937 -16.19859 -15.94316 -15.73028 -15.51016 -15.21479 -14.97839 -14.83719 -14.75116 -14.47817 -14.46888 -14.07915 -13.99869 -13.93392 -13.84416 -13.55403 -13.45907 -13.41353 -13.25732 -13.12512 -13.04771 -12.89485 -12.69200 -12.61984 -12.59194 -12.48646 -12.22466 -12.11443 -11.74315 -11.68211 -11.60088 -11.55854 -11.45161 -11.43074 -10.55939 -10.21244 -5.15829 -1.62388 -0.86676 -0.63735 0.00050 0.44437 0.65324 0.89169 0.99016 1.31955 1.47016 1.51500 1.62427 2.05681 2.35435 2.38691 2.52058 2.70188 2.78619 2.85147 2.88797 2.97491 3.14261 3.29654 3.35519 3.42979 3.54987 3.63721 3.73090 3.81364 3.89086 3.92788 3.94845 4.03039 4.08770 4.11957 4.17469 4.20093 4.22803 4.33756 4.40605 4.47701 4.65026 4.75028 4.79530 4.80103 4.96820 5.35306 6.14692 6.60144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.475 3.525 5 O -0.501 6.501 6 C -0.108 4.108 7 H 0.139 0.861 8 C -0.148 4.148 9 C 0.103 3.897 10 F -0.168 7.168 11 C -0.683 4.683 12 S 2.586 3.414 13 O -0.901 6.901 14 O -0.925 6.925 15 O -0.654 6.654 16 C 0.076 3.924 17 C -0.084 4.084 18 C -0.106 4.106 19 O -0.519 6.519 20 Si 0.744 3.256 21 C -0.094 4.094 22 C 0.011 3.989 23 Cl -0.016 7.016 24 C -0.076 4.076 25 Br 0.008 6.992 26 C -0.042 4.042 27 C -0.121 4.121 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.081 0.919 38 H 0.374 0.626 39 H -0.234 1.234 40 H -0.238 1.238 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.103 0.897 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -4.469 -1.690 4.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.388 6.388 6 C -0.127 4.127 7 H 0.156 0.844 8 C -0.186 4.186 9 C 0.084 3.916 10 F -0.148 7.148 11 C -0.807 4.807 12 S 2.679 3.321 13 O -0.899 6.899 14 O -0.923 6.923 15 O -0.613 6.613 16 C 0.033 3.967 17 C -0.088 4.088 18 C -0.214 4.214 19 O -0.325 6.325 20 Si 0.639 3.361 21 C -0.113 4.113 22 C -0.019 4.019 23 Cl 0.013 6.987 24 C -0.157 4.157 25 Br 0.095 6.905 26 C -0.064 4.064 27 C -0.159 4.159 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.099 0.901 38 H 0.223 0.777 39 H -0.158 1.158 40 H -0.162 1.162 41 H 0.176 0.824 42 H 0.186 0.814 43 H 0.122 0.878 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.693 -3.795 -1.927 4.312 hybrid contribution -0.714 0.495 0.240 0.901 sum -0.021 -3.300 -1.686 3.706 Atomic orbital electron populations 1.21832 0.92202 1.03361 1.03780 1.23133 0.95742 0.79533 1.02872 1.86520 1.23971 1.33044 1.83457 1.23161 0.80949 0.91736 0.72379 1.90691 1.60531 1.42647 1.44977 1.22478 0.97106 0.92220 1.00874 0.84357 1.23870 0.95818 1.02025 0.96850 1.21188 0.95159 0.82486 0.92806 1.93024 1.96977 1.41478 1.83313 1.31643 1.09929 1.23551 1.15622 1.05922 0.74784 0.76437 0.74918 1.93707 1.41250 1.85901 1.69061 1.93715 1.83298 1.36607 1.78676 1.85776 1.28979 1.85242 1.61298 1.17686 0.82482 0.92067 1.04449 1.20605 0.93158 0.97191 0.97819 1.25906 1.11393 0.91695 0.92417 1.86796 1.57974 1.67773 1.19908 0.92622 0.76270 0.90711 0.76496 1.20830 0.96188 0.93939 1.00353 1.20940 0.88961 0.93107 0.98862 1.98458 1.22666 1.89382 1.88160 1.21714 0.95126 0.93545 1.05275 1.96925 1.94211 1.02062 1.97347 1.21421 0.95639 0.94479 0.94825 1.23611 0.93932 0.97557 1.00846 0.91263 0.91311 0.89903 0.90950 0.90925 0.86299 0.87066 0.82907 0.81428 0.90135 0.77735 1.15793 1.16184 0.82435 0.81388 0.87836 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 10.29 37.16 0.38 0.74 16 2 C 0.06 -0.05 6.19 37.16 0.23 0.18 16 3 O -0.35 -0.20 10.22 -39.28 -0.40 -0.60 16 4 C 0.48 0.19 7.49 36.00 0.27 0.46 16 5 O -0.50 -1.29 15.65 -18.75 -0.29 -1.58 16 6 C -0.11 0.21 4.23 -90.87 -0.38 -0.18 16 7 H 0.14 -0.44 8.14 -51.93 -0.42 -0.87 16 8 C -0.15 0.31 6.76 -25.83 -0.17 0.13 16 9 C 0.10 -0.18 1.56 -89.79 -0.14 -0.32 16 10 F -0.17 -0.11 16.58 2.25 0.04 -0.07 16 11 C -0.68 1.99 3.65 37.16 0.14 2.12 16 12 S 2.59 1.52 4.91 -107.50 -0.53 0.99 16 13 O -0.90 -2.58 17.84 -67.03 -1.20 -3.77 16 14 O -0.92 -2.78 15.20 -67.04 -1.02 -3.80 16 15 O -0.65 0.11 9.02 -51.81 -0.47 -0.36 16 16 C 0.08 0.03 4.92 -39.23 -0.19 -0.16 16 17 C -0.08 0.04 4.70 -104.47 -0.49 -0.45 16 18 C -0.11 0.24 1.98 36.01 0.07 0.31 16 19 O -0.52 0.76 12.63 -35.23 -0.45 0.31 16 20 Si 0.74 -2.16 30.39 -169.99 -5.17 -7.32 16 21 C -0.09 0.01 8.44 -39.57 -0.33 -0.32 16 22 C 0.01 0.01 6.32 -39.46 -0.25 -0.24 16 23 Cl -0.02 -0.01 27.73 -51.86 -1.44 -1.45 16 24 C -0.08 -0.09 6.22 -39.51 -0.25 -0.33 16 25 Br 0.01 0.01 32.52 -68.01 -2.21 -2.20 16 26 C -0.04 -0.04 8.25 -39.41 -0.33 -0.37 16 27 C -0.12 0.34 6.86 -25.90 -0.18 0.16 16 28 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.07 -0.15 8.14 -51.92 -0.42 -0.57 16 30 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 31 H 0.07 -0.06 8.13 -51.93 -0.42 -0.48 16 32 H 0.07 -0.07 8.13 -51.93 -0.42 -0.49 16 33 H 0.12 -0.39 8.01 -51.93 -0.42 -0.81 16 34 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.15 -0.71 6.63 -51.92 -0.34 -1.06 16 36 H 0.17 -1.07 6.91 -51.92 -0.36 -1.43 16 37 H 0.08 -0.39 3.36 -51.93 -0.17 -0.56 16 38 H 0.37 -1.30 8.70 45.56 0.40 -0.90 16 39 H -0.23 0.55 7.11 56.52 0.40 0.96 16 40 H -0.24 0.17 6.82 56.52 0.39 0.56 16 41 H 0.16 -0.21 4.93 -52.49 -0.26 -0.47 16 42 H 0.17 0.04 7.79 -52.49 -0.41 -0.37 16 43 H 0.10 -0.36 8.14 -51.93 -0.42 -0.79 16 44 H 0.12 -0.44 7.40 -51.93 -0.38 -0.83 16 LS Contribution 413.36 15.07 6.23 6.23 Total: 0.00 -8.88 413.36 -13.07 -21.95 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: -4.54 Total: -10.08 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.63 Total: 1.74 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -3.82 Total: -9.79 kcal Atomic # 9 Polarization: -0.11 SS G_CDS: 0.04 Total: -0.07 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: -5.17 Total: -7.32 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -0.53 Total: 0.99 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.44 Total: -1.45 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.21 Total: -2.20 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -8.88 -13.07 -21.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15163264_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.046 kcal (2) G-P(sol) polarization free energy of solvation -8.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds