Wall clock time and date at job start Mon Mar 8 2021 09:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45193 * 109.47205 * 2 1 4 4 C 1.34238 * 117.00030 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00255 * 179.97438 * 4 3 2 7 7 H 1.09000 * 112.85167 * 311.20129 * 6 4 3 8 8 C 1.53963 * 113.74411 * 82.40325 * 6 4 3 9 9 C 1.53774 * 87.02046 * 139.94530 * 8 6 4 10 10 F 1.39898 * 113.61489 * 89.22982 * 9 8 6 11 11 C 1.52995 * 113.61400 * 220.04880 * 9 8 6 12 12 S 1.81395 * 109.47270 * 284.13660 * 11 9 8 13 13 O 1.42105 * 110.54367 * 68.37555 * 12 11 9 14 14 O 1.42099 * 110.54250 * 291.62135 * 12 11 9 15 15 O 1.52203 * 104.45344 * 180.02562 * 12 11 9 16 16 C 1.35920 * 114.00026 * 74.50508 * 15 12 11 17 17 C 1.38700 * 120.04090 * 260.00924 * 16 15 12 18 18 C 1.50706 * 120.01364 * 0.04150 * 17 16 15 19 19 O 1.42898 * 109.47176 * 285.36762 * 18 17 16 20 20 Si 1.86295 * 109.47105 * 165.36558 * 18 17 16 21 21 C 1.38177 * 119.97848 * 180.02562 * 17 16 15 22 22 C 1.38327 * 120.04668 * 0.25539 * 21 17 16 23 23 Cl 1.73599 * 119.95853 * 179.72348 * 22 21 17 24 24 C 1.38467 * 120.07860 * 359.49003 * 22 21 17 25 25 Br 1.89104 * 119.98967 * 180.25810 * 24 22 21 26 26 C 1.38214 * 120.02545 * 0.50940 * 24 22 21 27 27 C 1.53778 * 113.61551 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47029 * 300.00281 * 1 2 3 29 29 H 1.09007 * 109.46816 * 59.99727 * 1 2 3 30 30 H 1.08992 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47029 * 239.99719 * 2 1 3 32 32 H 1.09006 * 109.46817 * 119.99724 * 2 1 3 33 33 H 1.08999 * 113.60792 * 25.42359 * 8 6 4 34 34 H 1.09002 * 113.66579 * 254.47557 * 8 6 4 35 35 H 1.09008 * 109.47379 * 164.13616 * 11 9 8 36 36 H 1.09004 * 109.47158 * 44.13595 * 11 9 8 37 37 H 1.09003 * 109.46548 * 45.36444 * 18 17 16 38 38 H 0.96706 * 113.99706 * 65.82080 * 19 18 17 39 39 H 1.48497 * 110.00351 * 300.00406 * 20 18 17 40 40 H 1.48498 * 109.99925 * 61.32108 * 20 18 17 41 41 H 1.07996 * 119.97443 * 179.97438 * 21 17 16 42 42 H 1.07990 * 120.02792 * 179.76890 * 26 24 22 43 43 H 1.08996 * 113.61572 * 105.38993 * 27 6 4 44 44 H 1.09000 * 113.68802 * 334.49266 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0000 7 1 3.4716 3.5809 -0.7564 8 6 3.9850 3.5821 1.3966 9 6 5.3561 4.1443 0.9859 10 9 5.2851 5.3940 0.3610 11 6 6.3977 4.0983 2.1056 12 16 6.0575 5.4182 3.3025 13 8 4.8526 5.1533 4.0079 14 8 6.3021 6.6922 2.7228 15 8 7.1486 5.2688 4.3531 16 6 8.3711 5.7014 3.9458 17 6 9.3220 4.7889 3.5133 18 6 9.0000 3.3168 3.4938 19 8 9.0156 2.8080 4.8290 20 14 10.2708 2.4167 2.4713 21 6 10.5645 5.2301 3.1001 22 6 10.8626 6.5806 3.1224 23 17 12.4269 7.1317 2.6095 24 6 9.9132 7.4939 3.5487 25 35 10.3210 9.3404 3.5713 26 6 8.6693 7.0562 3.9628 27 6 5.4583 2.9679 0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 4.0357 2.8581 2.2098 34 1 3.2289 4.3503 1.5589 35 1 7.3924 4.2390 1.6825 36 1 6.3495 3.1317 2.6071 37 1 8.0115 3.1669 3.0594 38 1 8.3191 3.1679 5.3952 39 1 10.2646 2.9366 1.0804 40 1 11.6185 2.5870 3.0711 41 1 11.3050 4.5195 2.7638 42 1 7.9301 7.7681 4.2988 43 1 5.8896 3.2411 -0.9629 44 1 5.9140 2.0761 0.4303 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15163264_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:27 Heat of formation + Delta-G solvation = -192.357238 kcal Electronic energy + Delta-G solvation = -38542.891380 eV Core-core repulsion = 32964.909191 eV Total energy + Delta-G solvation = -5577.982189 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 486.972 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.22765 -42.96611 -41.83310 -40.10919 -39.37328 -38.70752 -38.26218 -37.63706 -37.56589 -37.50138 -34.27667 -32.86598 -32.23886 -32.08571 -31.20903 -27.39800 -27.30618 -26.67220 -25.42771 -23.98920 -23.59950 -22.51801 -21.79445 -20.89299 -19.98455 -19.47715 -19.22334 -18.86012 -18.75692 -18.07045 -17.90195 -17.62568 -17.56713 -17.19929 -16.78178 -16.34928 -16.27866 -16.15946 -15.89157 -15.64957 -15.41067 -15.19762 -14.96521 -14.71185 -14.65560 -14.46636 -14.32818 -14.09742 -13.90440 -13.72012 -13.66682 -13.65201 -13.55732 -13.40116 -13.12094 -12.99791 -12.93871 -12.92867 -12.64543 -12.53270 -12.48060 -12.36656 -12.18775 -11.95346 -11.62492 -11.56069 -11.54082 -11.49956 -11.43684 -11.30773 -10.57441 -10.23487 -4.90214 -1.62354 -0.87190 -0.64724 -0.04653 0.43146 0.64083 1.01104 1.10526 1.47905 1.57301 1.60052 1.85921 2.10547 2.42220 2.57731 2.67966 2.83832 2.87462 2.90292 3.02199 3.16792 3.22630 3.36777 3.52218 3.62477 3.64451 3.78509 3.82980 3.96539 3.99700 4.04295 4.05197 4.11729 4.19730 4.26703 4.33362 4.34820 4.36817 4.44041 4.61989 4.76216 4.80585 4.83270 4.90861 5.02467 5.14392 5.42757 6.42397 6.62006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.476 3.524 5 O -0.525 6.525 6 C -0.109 4.109 7 H 0.148 0.852 8 C -0.155 4.155 9 C 0.096 3.904 10 F -0.184 7.184 11 C -0.675 4.675 12 S 2.582 3.418 13 O -0.932 6.932 14 O -0.957 6.957 15 O -0.650 6.650 16 C 0.072 3.928 17 C -0.079 4.079 18 C -0.117 4.117 19 O -0.529 6.529 20 Si 0.791 3.209 21 C -0.097 4.097 22 C 0.006 3.994 23 Cl -0.018 7.018 24 C -0.084 4.084 25 Br 0.002 6.998 26 C -0.054 4.054 27 C -0.114 4.114 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.176 0.824 36 H 0.208 0.792 37 H 0.108 0.892 38 H 0.383 0.617 39 H -0.235 1.235 40 H -0.273 1.273 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.113 0.887 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -6.073 -2.222 6.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.320 3.680 5 O -0.414 6.414 6 C -0.128 4.128 7 H 0.166 0.834 8 C -0.193 4.193 9 C 0.076 3.924 10 F -0.165 7.165 11 C -0.802 4.802 12 S 2.679 3.321 13 O -0.930 6.930 14 O -0.956 6.956 15 O -0.608 6.608 16 C 0.029 3.971 17 C -0.083 4.083 18 C -0.224 4.224 19 O -0.336 6.336 20 Si 0.688 3.312 21 C -0.116 4.116 22 C -0.024 4.024 23 Cl 0.011 6.989 24 C -0.165 4.165 25 Br 0.089 6.911 26 C -0.076 4.076 27 C -0.152 4.152 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.127 0.873 35 H 0.193 0.807 36 H 0.225 0.775 37 H 0.126 0.874 38 H 0.232 0.768 39 H -0.159 1.159 40 H -0.199 1.199 41 H 0.186 0.814 42 H 0.186 0.814 43 H 0.131 0.869 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.688 -5.359 -2.427 5.923 hybrid contribution -0.719 0.941 0.411 1.253 sum -0.031 -4.418 -2.016 4.857 Atomic orbital electron populations 1.21841 0.91113 1.04240 1.03621 1.23280 0.96676 0.79116 1.02846 1.86531 1.24283 1.33751 1.83310 1.23574 0.80669 0.92299 0.71443 1.90673 1.60892 1.43594 1.46242 1.22587 0.97868 0.90981 1.01322 0.83435 1.24008 0.95758 1.02284 0.97231 1.21356 0.95574 0.82144 0.93329 1.92996 1.97072 1.42715 1.83686 1.31652 1.10917 1.23471 1.14194 1.05818 0.74298 0.76845 0.75127 1.93669 1.42668 1.86408 1.70233 1.93678 1.83553 1.39224 1.79123 1.85742 1.28715 1.85091 1.61280 1.17749 0.82736 0.91991 1.04622 1.20831 0.92560 0.98129 0.96767 1.26185 1.13380 0.90298 0.92570 1.86774 1.58653 1.67827 1.20335 0.92113 0.73897 0.89770 0.75460 1.21027 0.96627 0.93751 1.00227 1.21027 0.88830 0.93482 0.99038 1.98453 1.22753 1.89479 1.88187 1.21735 0.95413 0.93408 1.05947 1.96904 1.94228 1.02602 1.97412 1.21539 0.95718 0.95167 0.95209 1.23669 0.93214 0.97248 1.01085 0.91377 0.91455 0.88525 0.91097 0.90854 0.84960 0.87329 0.80650 0.77487 0.87441 0.76763 1.15929 1.19879 0.81420 0.81436 0.86870 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.74 10.29 71.98 0.74 1.48 16 2 C 0.05 -0.08 6.19 71.98 0.45 0.36 16 3 O -0.36 -0.35 10.22 -51.49 -0.53 -0.88 16 4 C 0.48 0.09 7.49 71.23 0.53 0.62 16 5 O -0.52 -2.30 15.65 21.98 0.34 -1.96 16 6 C -0.11 0.52 4.23 -10.95 -0.05 0.48 16 7 H 0.15 -1.04 8.14 -2.39 -0.02 -1.06 16 8 C -0.16 0.78 6.76 31.18 0.21 0.99 16 9 C 0.10 -0.46 1.56 -10.26 -0.02 -0.47 16 10 F -0.18 -0.19 16.58 44.97 0.75 0.56 16 11 C -0.67 5.20 3.65 71.98 0.26 5.46 16 12 S 2.58 2.95 4.91 -56.49 -0.28 2.68 16 13 O -0.93 -5.76 17.84 -118.57 -2.12 -7.87 16 14 O -0.96 -6.68 15.20 -118.57 -1.80 -8.48 16 15 O -0.65 0.31 9.02 -61.75 -0.56 -0.25 16 16 C 0.07 0.05 4.92 22.50 0.11 0.16 16 17 C -0.08 0.15 4.70 -19.77 -0.09 0.05 16 18 C -0.12 0.75 1.98 71.24 0.14 0.89 16 19 O -0.53 2.33 12.63 -148.98 -1.88 0.45 16 20 Si 0.79 -5.80 30.39 68.60 2.08 -3.71 16 21 C -0.10 0.06 8.44 22.28 0.19 0.25 16 22 C 0.01 0.01 6.32 22.35 0.14 0.15 16 23 Cl -0.02 -0.03 27.73 -2.72 -0.08 -0.11 16 24 C -0.08 -0.26 6.22 22.32 0.14 -0.12 16 25 Br 0.00 0.01 32.52 -20.37 -0.66 -0.65 16 26 C -0.05 -0.16 8.25 22.38 0.18 0.02 16 27 C -0.11 0.85 6.86 31.14 0.21 1.07 16 28 H 0.07 -0.31 8.14 -2.39 -0.02 -0.32 16 29 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 30 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.07 -0.11 8.13 -2.39 -0.02 -0.13 16 32 H 0.07 -0.14 8.13 -2.38 -0.02 -0.16 16 33 H 0.13 -1.06 8.01 -2.39 -0.02 -1.08 16 34 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.18 -2.10 6.63 -2.39 -0.02 -2.11 16 36 H 0.21 -3.36 6.91 -2.39 -0.02 -3.37 16 37 H 0.11 -1.35 3.36 -2.39 -0.01 -1.35 16 38 H 0.38 -3.15 8.70 -74.05 -0.64 -3.80 16 39 H -0.24 1.63 7.11 99.48 0.71 2.33 16 40 H -0.27 0.43 6.82 99.48 0.68 1.11 16 41 H 0.17 -0.52 4.93 -2.91 -0.01 -0.53 16 42 H 0.17 0.37 7.79 -2.92 -0.02 0.35 16 43 H 0.11 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.14 -1.37 7.40 -2.39 -0.02 -1.38 16 Total: 0.00 -21.90 413.36 -1.10 -23.00 By element: Atomic # 1 Polarization: -14.63 SS G_CDS: 0.47 Total: -14.15 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 3.16 Total: 11.38 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -6.54 Total: -18.99 kcal Atomic # 9 Polarization: -0.19 SS G_CDS: 0.75 Total: 0.56 kcal Atomic # 14 Polarization: -5.80 SS G_CDS: 2.08 Total: -3.71 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -0.28 Total: 2.68 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.66 Total: -0.65 kcal Total: -21.90 -1.10 -23.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15163264_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.360 kcal (2) G-P(sol) polarization free energy of solvation -21.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds