Wall clock time and date at job start Mon Mar 8 2021 09:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99709 * 2 1 4 4 C 1.52999 * 112.84612 * 294.01450 * 3 2 1 5 5 F 1.39909 * 109.46681 * 196.21725 * 4 3 2 6 6 F 1.39899 * 109.47442 * 316.21267 * 4 3 2 7 7 F 1.39897 * 109.47314 * 76.21905 * 4 3 2 8 8 C 1.53781 * 113.61418 * 162.70823 * 3 2 1 9 9 C 1.53776 * 87.08155 * 270.88504 * 8 3 2 10 10 H 1.08998 * 113.69140 * 220.00721 * 9 8 3 11 11 C 1.53001 * 113.61834 * 89.11660 * 9 8 3 12 12 S 1.81397 * 109.47026 * 88.00593 * 11 9 8 13 13 O 1.42095 * 110.54312 * 71.69700 * 12 11 9 14 14 O 1.42101 * 110.54360 * 294.94590 * 12 11 9 15 15 O 1.52206 * 104.44807 * 183.31990 * 12 11 9 16 16 C 1.35916 * 113.99751 * 76.05659 * 15 12 11 17 17 C 1.38707 * 120.03841 * 95.43835 * 16 15 12 18 18 C 1.50693 * 120.01244 * 359.97257 * 17 16 15 19 19 O 1.42902 * 109.47224 * 75.07731 * 18 17 16 20 20 Si 1.86301 * 109.47037 * 195.07421 * 18 17 16 21 21 C 1.38186 * 119.97260 * 179.71873 * 17 16 15 22 22 C 1.38318 * 120.05121 * 0.55320 * 21 17 16 23 23 Cl 1.73603 * 119.96009 * 179.70129 * 22 21 17 24 24 C 1.38477 * 120.08069 * 359.72405 * 22 21 17 25 25 Br 1.89096 * 119.99062 * 179.97438 * 24 22 21 26 26 C 1.38209 * 120.02091 * 359.97438 * 24 22 21 27 27 C 1.53775 * 113.61504 * 65.20992 * 3 2 1 28 28 H 1.09004 * 109.47427 * 65.47116 * 1 2 3 29 29 H 1.09001 * 109.46869 * 185.46677 * 1 2 3 30 30 H 1.08998 * 109.47192 * 305.46487 * 1 2 3 31 31 H 1.08994 * 113.61549 * 156.33105 * 8 3 2 32 32 H 1.09007 * 113.61344 * 25.43213 * 8 3 2 33 33 H 1.08996 * 109.46780 * 328.00865 * 11 9 8 34 34 H 1.08996 * 109.46883 * 208.00938 * 11 9 8 35 35 H 1.08996 * 109.47119 * 315.07412 * 18 17 16 36 36 H 0.96696 * 114.00444 * 55.29249 * 19 18 17 37 37 H 1.48500 * 109.99966 * 58.68479 * 20 18 17 38 38 H 1.48502 * 109.99826 * 180.02562 * 20 18 17 39 39 H 1.07999 * 119.96943 * 180.27744 * 21 17 16 40 40 H 1.07996 * 120.02960 * 180.02562 * 26 24 22 41 41 H 1.09005 * 113.61670 * 334.56978 * 27 3 2 42 42 H 1.08997 * 113.61776 * 203.66306 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7275 2.0816 -1.2879 5 9 2.6064 3.1662 -1.3811 6 9 1.9087 1.2386 -2.3897 7 9 0.4093 2.5497 -1.2706 8 6 3.4897 1.3211 0.4188 9 6 2.9969 1.4824 1.8665 10 1 3.5928 2.1783 2.4571 11 6 2.7533 0.1526 2.5828 12 16 4.2917 -0.4020 3.3678 13 8 4.5983 0.4099 4.4929 14 8 5.2758 -0.6941 2.3851 15 8 3.9452 -1.7578 3.9666 16 6 3.8697 -2.7621 3.0540 17 6 4.9686 -3.5773 2.8262 18 6 6.2474 -3.3496 3.5902 19 8 6.0936 -3.8251 4.9289 20 14 7.6387 -4.2695 2.7604 21 6 4.8885 -4.6018 1.9022 22 6 3.7171 -4.8076 1.1961 23 17 3.6216 -6.0904 0.0303 24 6 2.6206 -3.9915 1.4176 25 35 1.0206 -4.2748 0.4503 26 6 2.6951 -2.9699 2.3455 27 6 1.7210 2.1085 1.2791 28 1 -0.3634 0.4266 -0.9349 29 1 -0.3633 -1.0230 0.0979 30 1 -0.3633 0.5962 0.8370 31 1 4.0399 2.1850 0.0460 32 1 4.0054 0.3784 0.2356 33 1 2.4243 -0.5942 1.8604 34 1 1.9844 0.2854 3.3439 35 1 6.4756 -2.2839 3.6071 36 1 5.8185 -4.7502 4.9886 37 1 7.7882 -3.8066 1.3573 38 1 8.9055 -4.0535 3.5047 39 1 5.7427 -5.2393 1.7282 40 1 1.8399 -2.3335 2.5186 41 1 0.8086 1.8015 1.7906 42 1 1.7876 3.1878 1.1417 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15163264_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:34:13 Heat of formation + Delta-G solvation = -253.620256 kcal Electronic energy + Delta-G solvation = -41443.051536 eV Core-core repulsion = 35370.413165 eV Total energy + Delta-G solvation = -6072.638371 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.954 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -51.23937 -48.78729 -48.66822 -42.79806 -41.69480 -40.00032 -38.48528 -38.21273 -37.60826 -37.56451 -37.31640 -34.18433 -32.34580 -31.75160 -31.23095 -28.64813 -27.99314 -27.07768 -27.00781 -25.31077 -23.78704 -23.51106 -21.97970 -20.90579 -20.11255 -19.75526 -19.52581 -19.40749 -19.08081 -18.97910 -18.48658 -17.60175 -17.45892 -17.22965 -16.86997 -16.69236 -16.21012 -16.09293 -15.96194 -15.75150 -15.58107 -15.53255 -15.38296 -15.27934 -15.15604 -15.03746 -14.90652 -14.83645 -14.81266 -14.52129 -14.34012 -14.15740 -13.98129 -13.53121 -13.48582 -13.38144 -13.33340 -13.24466 -13.09281 -12.86031 -12.78107 -12.61436 -12.47271 -12.37725 -12.27066 -12.18921 -12.04410 -11.66730 -11.48172 -11.01553 -10.65726 -10.54357 -10.11630 -5.19204 -1.42997 -0.74963 -0.60152 -0.02173 0.55263 0.81246 1.05450 1.45458 1.54338 1.60668 1.85768 1.90349 2.25107 2.40195 2.51227 2.59519 2.67694 2.86633 2.92734 2.95077 2.97180 3.20614 3.23629 3.32447 3.39065 3.47280 3.57473 3.77241 3.87844 3.91211 3.95338 4.07041 4.08223 4.13285 4.16839 4.21239 4.28157 4.31509 4.36485 4.49162 4.50565 4.54749 4.60438 4.90414 5.48100 6.38431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.331 6.331 3 C 0.041 3.959 4 C 0.438 3.562 5 F -0.174 7.174 6 F -0.172 7.172 7 F -0.181 7.181 8 C -0.125 4.125 9 C -0.091 4.091 10 H 0.110 0.890 11 C -0.647 4.647 12 S 2.584 3.416 13 O -0.912 6.912 14 O -0.942 6.942 15 O -0.649 6.649 16 C 0.105 3.895 17 C -0.065 4.065 18 C -0.083 4.083 19 O -0.526 6.526 20 Si 0.690 3.310 21 C -0.081 4.081 22 C 0.005 3.995 23 Cl -0.017 7.017 24 C -0.066 4.066 25 Br 0.003 6.997 26 C -0.097 4.097 27 C -0.137 4.137 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.126 0.874 32 H 0.108 0.892 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.382 0.618 37 H -0.242 1.242 38 H -0.242 1.242 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.099 0.901 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 -3.402 -0.107 4.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.248 6.248 3 C -0.001 4.001 4 C 0.383 3.617 5 F -0.156 7.156 6 F -0.153 7.153 7 F -0.162 7.162 8 C -0.161 4.161 9 C -0.111 4.111 10 H 0.128 0.872 11 C -0.773 4.773 12 S 2.680 3.320 13 O -0.910 6.910 14 O -0.940 6.940 15 O -0.607 6.607 16 C 0.062 3.938 17 C -0.068 4.068 18 C -0.192 4.192 19 O -0.331 6.331 20 Si 0.588 3.412 21 C -0.100 4.100 22 C -0.025 4.025 23 Cl 0.012 6.988 24 C -0.147 4.147 25 Br 0.090 6.910 26 C -0.119 4.119 27 C -0.175 4.175 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.139 0.861 36 H 0.229 0.771 37 H -0.166 1.166 38 H -0.166 1.166 39 H 0.181 0.819 40 H 0.179 0.821 41 H 0.118 0.882 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.111 -3.122 -0.412 3.791 hybrid contribution -1.290 1.232 -0.240 1.800 sum -3.402 -1.890 -0.653 3.946 Atomic orbital electron populations 1.23177 0.79385 1.04410 1.01818 1.88052 1.21198 1.21742 1.93851 1.23930 0.99554 0.86516 0.90131 1.21098 0.74374 0.78724 0.87475 1.93189 1.69043 1.56744 1.96576 1.93230 1.94867 1.70665 1.56578 1.93197 1.36715 1.89469 1.96827 1.23473 0.91707 1.06963 0.93999 1.21688 0.99507 0.93908 0.95967 0.87172 1.30933 1.24162 1.08123 1.14067 1.05905 0.77002 0.74142 0.74992 1.93694 1.82216 1.66015 1.49092 1.93662 1.56019 1.80912 1.63421 1.85793 1.90673 1.33997 1.50283 1.17605 0.94384 0.91214 0.90593 1.20597 0.96044 0.94072 0.96131 1.25385 0.99835 1.06158 0.87864 1.86623 1.91241 1.32675 1.22552 0.95353 0.77559 0.88588 0.79652 1.20872 0.97088 0.97397 0.94682 1.20877 0.93998 0.92806 0.94806 1.98458 1.98181 1.46688 1.55442 1.21566 0.94283 0.98582 1.00240 1.96909 1.26094 1.96126 1.71915 1.21310 0.97445 0.98389 0.94757 1.23598 0.99178 1.01147 0.93584 0.92627 0.87909 0.92479 0.85581 0.87317 0.83041 0.83179 0.86092 0.77073 1.16647 1.16598 0.81865 0.82096 0.88227 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.29 101.05 1.04 1.02 16 2 O -0.33 0.42 8.36 -35.23 -0.29 0.13 16 3 C 0.04 -0.05 0.85 -89.81 -0.08 -0.13 16 4 C 0.44 0.20 2.52 37.16 0.09 0.29 16 5 F -0.17 -0.12 15.82 2.25 0.04 -0.08 16 6 F -0.17 -0.38 17.10 2.25 0.04 -0.34 16 7 F -0.18 -0.12 15.43 2.25 0.03 -0.08 16 8 C -0.12 0.21 6.89 -25.92 -0.18 0.03 16 9 C -0.09 0.23 3.85 -89.81 -0.35 -0.12 16 10 H 0.11 -0.40 8.12 -51.93 -0.42 -0.82 16 11 C -0.65 1.66 5.04 37.16 0.19 1.85 16 12 S 2.58 3.22 4.97 -107.50 -0.53 2.69 16 13 O -0.91 -4.26 18.09 -67.04 -1.21 -5.47 16 14 O -0.94 -2.48 15.03 -67.04 -1.01 -3.48 16 15 O -0.65 -0.81 9.40 -51.80 -0.49 -1.30 16 16 C 0.11 0.03 4.68 -39.22 -0.18 -0.15 16 17 C -0.06 0.00 4.74 -104.47 -0.50 -0.49 16 18 C -0.08 -0.06 2.31 36.00 0.08 0.02 16 19 O -0.53 -0.23 12.84 -35.23 -0.45 -0.68 16 20 Si 0.69 -0.77 30.00 -169.99 -5.10 -5.87 16 21 C -0.08 0.15 8.44 -39.57 -0.33 -0.19 16 22 C 0.01 -0.01 6.32 -39.46 -0.25 -0.26 16 23 Cl -0.02 0.02 27.73 -51.86 -1.44 -1.42 16 24 C -0.07 0.07 6.22 -39.50 -0.25 -0.18 16 25 Br 0.00 0.00 32.52 -68.01 -2.21 -2.22 16 26 C -0.10 0.14 8.20 -39.41 -0.32 -0.18 16 27 C -0.14 0.43 6.50 -25.92 -0.17 0.26 16 28 H 0.06 -0.10 6.74 -51.93 -0.35 -0.45 16 29 H 0.10 -0.42 8.14 -51.93 -0.42 -0.84 16 30 H 0.06 -0.24 6.53 -51.93 -0.34 -0.58 16 31 H 0.13 -0.35 7.02 -51.93 -0.36 -0.71 16 32 H 0.11 -0.13 8.09 -51.93 -0.42 -0.55 16 33 H 0.15 -0.49 3.89 -51.93 -0.20 -0.69 16 34 H 0.15 -0.78 8.14 -51.93 -0.42 -1.21 16 35 H 0.12 0.32 6.15 -51.93 -0.32 0.00 16 36 H 0.38 -1.68 8.76 45.56 0.40 -1.28 16 37 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 38 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 39 H 0.16 -0.73 5.14 -52.49 -0.27 -1.00 16 40 H 0.16 -0.65 6.79 -52.49 -0.36 -1.01 16 41 H 0.10 -0.44 6.62 -51.93 -0.34 -0.78 16 42 H 0.11 -0.46 8.06 -51.93 -0.42 -0.88 16 LS Contribution 396.55 15.07 5.98 5.98 Total: 0.00 -9.79 396.55 -11.30 -21.08 By element: Atomic # 1 Polarization: -7.24 SS G_CDS: -3.45 Total: -10.69 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.20 Total: 1.77 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -3.45 Total: -10.81 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.11 Total: -0.51 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.10 Total: -5.87 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -0.53 Total: 2.69 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.44 Total: -1.42 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -9.79 -11.30 -21.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15163264_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -232.536 kcal (2) G-P(sol) polarization free energy of solvation -9.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds