Wall clock time and date at job start Mon Mar 8 2021 09:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99709 * 2 1 4 4 C 1.52999 * 112.84612 * 294.01450 * 3 2 1 5 5 F 1.39909 * 109.46681 * 196.21725 * 4 3 2 6 6 F 1.39899 * 109.47442 * 316.21267 * 4 3 2 7 7 F 1.39897 * 109.47314 * 76.21905 * 4 3 2 8 8 C 1.53781 * 113.61418 * 162.70823 * 3 2 1 9 9 C 1.53776 * 87.08155 * 270.88504 * 8 3 2 10 10 H 1.08998 * 113.69140 * 220.00721 * 9 8 3 11 11 C 1.53001 * 113.61834 * 89.11660 * 9 8 3 12 12 S 1.81397 * 109.47026 * 88.00593 * 11 9 8 13 13 O 1.42095 * 110.54312 * 71.69700 * 12 11 9 14 14 O 1.42101 * 110.54360 * 294.94590 * 12 11 9 15 15 O 1.52206 * 104.44807 * 183.31990 * 12 11 9 16 16 C 1.35916 * 113.99751 * 76.05659 * 15 12 11 17 17 C 1.38707 * 120.03841 * 95.43835 * 16 15 12 18 18 C 1.50693 * 120.01244 * 359.97257 * 17 16 15 19 19 O 1.42902 * 109.47224 * 75.07731 * 18 17 16 20 20 Si 1.86301 * 109.47037 * 195.07421 * 18 17 16 21 21 C 1.38186 * 119.97260 * 179.71873 * 17 16 15 22 22 C 1.38318 * 120.05121 * 0.55320 * 21 17 16 23 23 Cl 1.73603 * 119.96009 * 179.70129 * 22 21 17 24 24 C 1.38477 * 120.08069 * 359.72405 * 22 21 17 25 25 Br 1.89096 * 119.99062 * 179.97438 * 24 22 21 26 26 C 1.38209 * 120.02091 * 359.97438 * 24 22 21 27 27 C 1.53775 * 113.61504 * 65.20992 * 3 2 1 28 28 H 1.09004 * 109.47427 * 65.47116 * 1 2 3 29 29 H 1.09001 * 109.46869 * 185.46677 * 1 2 3 30 30 H 1.08998 * 109.47192 * 305.46487 * 1 2 3 31 31 H 1.08994 * 113.61549 * 156.33105 * 8 3 2 32 32 H 1.09007 * 113.61344 * 25.43213 * 8 3 2 33 33 H 1.08996 * 109.46780 * 328.00865 * 11 9 8 34 34 H 1.08996 * 109.46883 * 208.00938 * 11 9 8 35 35 H 1.08996 * 109.47119 * 315.07412 * 18 17 16 36 36 H 0.96696 * 114.00444 * 55.29249 * 19 18 17 37 37 H 1.48500 * 109.99966 * 58.68479 * 20 18 17 38 38 H 1.48502 * 109.99826 * 180.02562 * 20 18 17 39 39 H 1.07999 * 119.96943 * 180.27744 * 21 17 16 40 40 H 1.07996 * 120.02960 * 180.02562 * 26 24 22 41 41 H 1.09005 * 113.61670 * 334.56978 * 27 3 2 42 42 H 1.08997 * 113.61776 * 203.66306 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7275 2.0816 -1.2879 5 9 2.6064 3.1662 -1.3811 6 9 1.9087 1.2386 -2.3897 7 9 0.4093 2.5497 -1.2706 8 6 3.4897 1.3211 0.4188 9 6 2.9969 1.4824 1.8665 10 1 3.5928 2.1783 2.4571 11 6 2.7533 0.1526 2.5828 12 16 4.2917 -0.4020 3.3678 13 8 4.5983 0.4099 4.4929 14 8 5.2758 -0.6941 2.3851 15 8 3.9452 -1.7578 3.9666 16 6 3.8697 -2.7621 3.0540 17 6 4.9686 -3.5773 2.8262 18 6 6.2474 -3.3496 3.5902 19 8 6.0936 -3.8251 4.9289 20 14 7.6387 -4.2695 2.7604 21 6 4.8885 -4.6018 1.9022 22 6 3.7171 -4.8076 1.1961 23 17 3.6216 -6.0904 0.0303 24 6 2.6206 -3.9915 1.4176 25 35 1.0206 -4.2748 0.4503 26 6 2.6951 -2.9699 2.3455 27 6 1.7210 2.1085 1.2791 28 1 -0.3634 0.4266 -0.9349 29 1 -0.3633 -1.0230 0.0979 30 1 -0.3633 0.5962 0.8370 31 1 4.0399 2.1850 0.0460 32 1 4.0054 0.3784 0.2356 33 1 2.4243 -0.5942 1.8604 34 1 1.9844 0.2854 3.3439 35 1 6.4756 -2.2839 3.6071 36 1 5.8185 -4.7502 4.9886 37 1 7.7882 -3.8066 1.3573 38 1 8.9055 -4.0535 3.5047 39 1 5.7427 -5.2393 1.7282 40 1 1.8399 -2.3335 2.5186 41 1 0.8086 1.8015 1.7906 42 1 1.7876 3.1878 1.1417 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15163264_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:34:11 Heat of formation + Delta-G solvation = -253.885630 kcal Electronic energy + Delta-G solvation = -41443.063044 eV Core-core repulsion = 35370.413165 eV Total energy + Delta-G solvation = -6072.649879 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.954 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -51.26827 -48.80587 -48.73619 -42.76262 -41.50996 -39.94587 -38.61476 -38.18067 -37.58391 -37.46474 -37.30453 -34.09687 -32.22913 -31.63643 -31.14753 -28.42334 -27.89816 -27.00752 -26.82112 -25.23182 -23.68626 -23.45492 -21.95438 -20.77377 -20.07066 -19.74563 -19.54944 -19.38911 -19.08240 -18.92916 -18.46308 -17.54599 -17.33092 -17.14929 -16.84469 -16.51175 -16.18694 -15.98607 -15.86936 -15.68983 -15.61023 -15.48682 -15.33009 -15.21687 -15.15096 -14.96357 -14.88381 -14.85248 -14.79776 -14.42566 -14.26738 -14.22171 -14.04678 -13.61997 -13.50139 -13.29852 -13.23641 -13.06869 -12.96304 -12.79030 -12.71903 -12.38820 -12.32434 -12.26438 -12.21867 -12.13941 -12.00940 -11.50183 -11.37296 -10.85194 -10.65253 -10.42505 -10.03960 -5.16267 -1.42539 -0.66915 -0.51301 0.07904 0.61593 0.85051 1.07298 1.50605 1.57113 1.69136 1.90609 2.04739 2.25711 2.51777 2.57032 2.61681 2.80654 3.02256 3.06136 3.09524 3.10544 3.27863 3.29587 3.41090 3.47982 3.61084 3.73144 3.90379 4.02546 4.10589 4.15634 4.24586 4.29226 4.33470 4.35843 4.39030 4.44370 4.50274 4.60457 4.63855 4.71803 4.82029 4.83188 4.98159 5.69084 6.64062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.338 6.338 3 C 0.039 3.961 4 C 0.432 3.568 5 F -0.178 7.178 6 F -0.187 7.187 7 F -0.183 7.183 8 C -0.135 4.135 9 C -0.097 4.097 10 H 0.120 0.880 11 C -0.625 4.625 12 S 2.577 3.423 13 O -0.958 6.958 14 O -0.966 6.966 15 O -0.656 6.656 16 C 0.087 3.913 17 C -0.076 4.076 18 C -0.101 4.101 19 O -0.543 6.543 20 Si 0.789 3.211 21 C -0.076 4.076 22 C 0.002 3.998 23 Cl -0.016 7.016 24 C -0.071 4.071 25 Br 0.007 6.993 26 C -0.092 4.092 27 C -0.128 4.128 28 H 0.043 0.957 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.184 0.816 35 H 0.096 0.904 36 H 0.401 0.599 37 H -0.269 1.269 38 H -0.285 1.285 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.119 0.881 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -3.887 -0.177 6.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.256 6.256 3 C -0.003 4.003 4 C 0.378 3.622 5 F -0.159 7.159 6 F -0.168 7.168 7 F -0.164 7.164 8 C -0.172 4.172 9 C -0.117 4.117 10 H 0.138 0.862 11 C -0.755 4.755 12 S 2.678 3.322 13 O -0.956 6.956 14 O -0.964 6.964 15 O -0.615 6.615 16 C 0.044 3.956 17 C -0.080 4.080 18 C -0.208 4.208 19 O -0.352 6.352 20 Si 0.690 3.310 21 C -0.095 4.095 22 C -0.028 4.028 23 Cl 0.013 6.987 24 C -0.152 4.152 25 Br 0.093 6.907 26 C -0.114 4.114 27 C -0.166 4.166 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.118 0.882 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.113 0.887 36 H 0.252 0.748 37 H -0.195 1.195 38 H -0.212 1.212 39 H 0.204 0.796 40 H 0.204 0.796 41 H 0.137 0.863 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.695 -3.634 -0.454 5.202 hybrid contribution -0.842 1.396 -0.273 1.653 sum -4.537 -2.238 -0.726 5.111 Atomic orbital electron populations 1.23350 0.78626 1.05565 1.01998 1.88045 1.22074 1.21711 1.93803 1.24039 0.99767 0.86766 0.89753 1.21493 0.74195 0.78689 0.87840 1.93175 1.69160 1.56979 1.96623 1.93195 1.94951 1.71114 1.57573 1.93188 1.36863 1.89515 1.96838 1.23598 0.91795 1.06917 0.94876 1.21795 1.00289 0.94056 0.95548 0.86156 1.30780 1.21664 1.08356 1.14716 1.05911 0.78281 0.73757 0.74298 1.93633 1.83820 1.67111 1.51022 1.93621 1.58236 1.81126 1.63455 1.85754 1.90766 1.34233 1.50731 1.17877 0.95261 0.91305 0.91159 1.20646 0.95764 0.94860 0.96706 1.25598 1.01510 1.05287 0.88428 1.86570 1.91471 1.34567 1.22585 0.94356 0.73834 0.86677 0.76141 1.21050 0.97710 0.97017 0.93716 1.20977 0.94214 0.92835 0.94815 1.98460 1.98181 1.46627 1.55405 1.21679 0.94457 0.98705 1.00347 1.96914 1.25812 1.96125 1.71863 1.21526 0.97555 0.98410 0.93878 1.23665 0.99413 1.01506 0.91992 0.93844 0.86650 0.90620 0.84978 0.88163 0.81981 0.79793 0.88672 0.74792 1.19506 1.21207 0.79552 0.79647 0.86269 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.29 113.37 1.17 1.17 16 2 O -0.34 1.23 8.36 -148.98 -1.25 -0.02 16 3 C 0.04 -0.13 0.85 -10.27 -0.01 -0.14 16 4 C 0.43 0.37 2.52 71.98 0.18 0.55 16 5 F -0.18 -0.26 15.82 44.97 0.71 0.45 16 6 F -0.19 -0.95 17.10 44.97 0.77 -0.18 16 7 F -0.18 -0.18 15.43 44.97 0.69 0.52 16 8 C -0.13 0.45 6.89 31.12 0.21 0.66 16 9 C -0.10 0.58 3.85 -10.27 -0.04 0.54 16 10 H 0.12 -0.93 8.12 -2.39 -0.02 -0.95 16 11 C -0.63 3.91 5.04 71.98 0.36 4.27 16 12 S 2.58 9.02 4.97 -56.49 -0.28 8.74 16 13 O -0.96 -10.64 18.09 -118.57 -2.15 -12.79 16 14 O -0.97 -6.85 15.03 -118.57 -1.78 -8.63 16 15 O -0.66 -2.23 9.40 -61.70 -0.58 -2.81 16 16 C 0.09 0.08 4.68 22.50 0.11 0.19 16 17 C -0.08 -0.04 4.74 -19.77 -0.09 -0.13 16 18 C -0.10 -0.28 2.31 71.23 0.16 -0.12 16 19 O -0.54 -1.06 12.84 -148.98 -1.91 -2.97 16 20 Si 0.79 -1.20 30.00 68.60 2.06 0.86 16 21 C -0.08 0.29 8.44 22.28 0.19 0.48 16 22 C 0.00 0.00 6.32 22.35 0.14 0.14 16 23 Cl -0.02 0.05 27.73 -2.72 -0.08 -0.03 16 24 C -0.07 0.20 6.22 22.32 0.14 0.33 16 25 Br 0.01 -0.02 32.52 -20.37 -0.66 -0.69 16 26 C -0.09 0.33 8.20 22.38 0.18 0.51 16 27 C -0.13 1.04 6.50 31.12 0.20 1.24 16 28 H 0.04 -0.19 6.74 -2.38 -0.02 -0.20 16 29 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 30 H 0.08 -0.82 6.53 -2.39 -0.02 -0.84 16 31 H 0.13 -0.68 7.02 -2.39 -0.02 -0.69 16 32 H 0.10 -0.17 8.09 -2.38 -0.02 -0.19 16 33 H 0.16 -1.29 3.89 -2.39 -0.01 -1.30 16 34 H 0.18 -2.40 8.14 -2.39 -0.02 -2.42 16 35 H 0.10 0.75 6.15 -2.39 -0.01 0.74 16 36 H 0.40 -3.41 8.76 -74.06 -0.65 -4.06 16 37 H -0.27 -0.72 7.11 99.48 0.71 -0.01 16 38 H -0.29 -1.53 7.11 99.48 0.71 -0.83 16 39 H 0.19 -1.82 5.14 -2.91 -0.01 -1.83 16 40 H 0.19 -1.81 6.79 -2.91 -0.02 -1.83 16 41 H 0.12 -1.43 6.62 -2.38 -0.02 -1.44 16 42 H 0.12 -1.23 8.06 -2.39 -0.02 -1.25 16 Total: 0.00 -25.10 396.55 -1.00 -26.10 By element: Atomic # 1 Polarization: -18.80 SS G_CDS: 0.55 Total: -18.25 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 2.91 Total: 9.69 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -7.67 Total: -27.22 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 2.17 Total: 0.79 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 2.06 Total: 0.86 kcal Atomic # 16 Polarization: 9.02 SS G_CDS: -0.28 Total: 8.74 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.66 Total: -0.69 kcal Total: -25.10 -1.00 -26.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15163264_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.783 kcal (2) G-P(sol) polarization free energy of solvation -25.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds