Wall clock time and date at job start Mon Mar 8 2021 09:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86294 * 109.47171 * 2 1 4 4 H 1.48501 * 109.47360 * 59.99471 * 3 2 1 5 5 H 1.48494 * 109.47327 * 179.97438 * 3 2 1 6 6 H 1.48500 * 109.47312 * 299.99695 * 3 2 1 7 7 C 1.50702 * 109.46591 * 119.99526 * 2 1 3 8 8 C 1.38126 * 120.01209 * 255.27948 * 7 2 1 9 9 C 1.38369 * 120.05145 * 179.97438 * 8 7 2 10 10 Cl 1.73608 * 119.96077 * 180.02562 * 9 8 7 11 11 C 1.38430 * 120.07759 * 359.97438 * 9 8 7 12 12 Br 1.89097 * 119.98906 * 180.02562 * 11 9 8 13 13 C 1.38248 * 120.02351 * 359.97438 * 11 9 8 14 14 C 1.38689 * 119.94684 * 359.80105 * 13 11 9 15 15 O 1.35920 * 120.03806 * 180.02562 * 14 13 11 16 16 S 1.52192 * 114.00017 * 275.62166 * 15 14 13 17 17 O 1.42105 * 106.40380 * 187.76365 * 16 15 14 18 18 O 1.42098 * 106.40562 * 320.68429 * 16 15 14 19 19 C 1.76205 * 107.21681 * 74.22649 * 16 15 14 20 20 C 1.38206 * 119.99996 * 262.60129 * 19 16 15 21 21 C 1.38251 * 120.00063 * 179.97438 * 20 19 16 22 Xx 1.81004 * 119.99976 * 179.97438 * 21 20 19 23 22 F 8.81483 * 138.84360 * 149.41096 * 2 1 3 24 23 F 1.61000 * 89.99870 * 135.00136 * 22 21 20 25 24 F 1.60996 * 90.00115 * 315.00461 * 22 21 20 26 25 F 1.61001 * 90.00103 * 225.00137 * 22 21 20 27 26 F 1.60995 * 89.99842 * 45.00594 * 22 21 20 28 27 C 1.38216 * 120.00099 * 359.95948 * 21 20 19 29 28 C 1.38251 * 119.99780 * 0.02634 * 28 21 20 30 29 C 1.38216 * 120.00049 * 359.76191 * 29 28 21 31 30 H 0.96704 * 114.00244 * 173.63161 * 1 2 3 32 31 H 1.08994 * 109.47388 * 239.99630 * 2 1 3 33 32 H 1.07995 * 119.97755 * 359.96111 * 8 7 2 34 33 H 1.08002 * 120.02759 * 180.02562 * 13 11 9 35 34 H 1.07999 * 120.00055 * 359.97438 * 20 19 16 36 35 H 1.08005 * 119.99822 * 179.97438 * 28 21 20 37 36 H 1.08008 * 119.99836 * 179.97438 * 29 28 21 38 37 H 1.08002 * 119.99729 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5549 2.4565 1.2124 5 1 3.5350 1.7564 0.0006 6 1 1.5551 2.4564 -1.2125 7 6 1.9312 -0.7103 1.2306 8 6 2.4480 0.0165 2.2853 9 6 2.9089 -0.6348 3.4158 10 17 3.5573 0.2811 4.7404 11 6 2.8525 -2.0159 3.4923 12 35 3.4823 -2.9034 5.0387 13 6 2.3349 -2.7464 2.4389 14 6 1.8684 -2.0943 1.3072 15 8 1.3587 -2.8107 0.2707 16 16 2.4104 -3.3316 -0.6983 17 8 1.7026 -3.8880 -1.7977 18 8 3.3746 -2.2972 -0.8380 19 6 3.2316 -4.6735 0.0953 20 6 4.4369 -4.4632 0.7380 21 6 5.0810 -5.5160 1.3611 22 9 8.0658 -4.9939 2.9521 23 9 6.1436 -6.1095 3.4555 24 9 7.1760 -4.3718 0.9490 25 9 7.2543 -6.5738 1.5229 26 9 6.0654 -3.9076 2.8816 27 6 4.5191 -6.7786 1.3419 28 6 3.3132 -6.9889 0.6992 29 6 2.6672 -5.9355 0.0801 30 1 -0.3934 -0.8780 -0.0980 31 1 1.7924 -0.5139 -0.8899 32 1 2.4926 1.0940 2.2276 33 1 2.2905 -3.8239 2.4986 34 1 4.8756 -3.4765 0.7535 35 1 5.0225 -7.6011 1.8283 36 1 2.8743 -7.9757 0.6839 37 1 1.7250 -6.0997 -0.4216 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15163264_9043274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:22:48 Heat of formation + Delta-G solvation = 307.865378 kcal Electronic energy + Delta-G solvation = -41299.116319 eV Core-core repulsion = 34799.793391 eV Total energy + Delta-G solvation = -6499.322928 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 499.912 amu Computer time = 27.96 seconds Orbital eigenvalues (eV) -44.44242 -44.26757 -44.23045 -44.10888 -43.59562 -42.99676 -41.33461 -40.10700 -38.98749 -38.21678 -37.69815 -37.54150 -34.24137 -33.54030 -32.79611 -32.08813 -31.26674 -27.09031 -25.67614 -25.14049 -24.35132 -23.65390 -22.07911 -20.26731 -19.68959 -19.25190 -18.87416 -18.55108 -17.90579 -17.68044 -17.57986 -16.61978 -16.27955 -15.93890 -15.89478 -15.73517 -15.63190 -15.35114 -15.34299 -15.14429 -15.06849 -14.80628 -14.66908 -14.49516 -14.38167 -14.28680 -14.19308 -14.13764 -14.09099 -14.08319 -13.94266 -13.82545 -13.75360 -13.72507 -13.64484 -13.56618 -13.41772 -12.92484 -12.70016 -12.60792 -12.39740 -12.34418 -12.12818 -12.00330 -11.97406 -11.60883 -11.56878 -11.47585 -11.42785 -11.41761 -11.13599 -10.56936 -10.17438 -5.29013 -4.83282 -3.44341 -1.71434 -1.32737 -1.01443 -0.80312 -0.64903 -0.01813 0.50231 0.74431 0.97124 1.38915 1.40359 1.43680 1.56254 1.84611 1.90265 2.28522 2.44544 2.76079 2.91628 2.94495 2.98789 3.07587 3.22360 3.33889 3.43104 3.58480 3.67680 3.85578 3.87966 3.95493 3.98192 4.12698 4.24668 4.30603 4.39393 4.42892 4.78788 4.81534 6.46948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.111 4.111 3 Si 1.001 2.999 4 H -0.237 1.237 5 H -0.234 1.234 6 H -0.251 1.251 7 C -0.060 4.060 8 C -0.095 4.095 9 C 0.005 3.995 10 Cl -0.022 7.022 11 C -0.082 4.082 12 Br 0.003 6.997 13 C -0.084 4.084 14 C 0.079 3.921 15 O -0.631 6.631 16 S 2.680 3.320 17 O -0.904 6.904 18 O -0.948 6.948 19 C -0.663 4.663 20 C -0.032 4.032 21 C 0.314 3.686 22 F -0.207 7.207 23 F -0.152 7.152 24 F -0.178 7.178 25 F -0.168 7.168 26 F -0.134 7.134 27 C -0.048 4.048 28 C -0.036 4.036 29 C 0.019 3.981 30 H 0.386 0.614 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.190 0.810 34 H 0.183 0.817 35 H 0.206 0.794 36 H 0.249 0.751 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 -5.826 -3.470 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.219 4.219 3 Si 0.818 3.182 4 H -0.160 1.160 5 H -0.156 1.156 6 H -0.175 1.175 7 C -0.064 4.064 8 C -0.114 4.114 9 C -0.025 4.025 10 Cl 0.007 6.993 11 C -0.163 4.163 12 Br 0.090 6.910 13 C -0.105 4.105 14 C 0.037 3.963 15 O -0.590 6.590 16 S 2.770 3.230 17 O -0.903 6.903 18 O -0.946 6.946 19 C -0.744 4.744 20 C -0.050 4.050 21 C 0.308 3.692 22 F -0.206 7.206 23 F -0.151 7.151 24 F -0.176 7.176 25 F -0.166 7.166 26 F -0.133 7.133 27 C -0.065 4.065 28 C -0.053 4.053 29 C 0.001 3.999 30 H 0.236 0.764 31 H 0.112 0.888 32 H 0.189 0.811 33 H 0.207 0.793 34 H 0.200 0.800 35 H 0.223 0.777 36 H 0.265 0.735 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.603 -4.254 -3.224 12.772 hybrid contribution 1.734 -1.033 0.836 2.185 sum -9.869 -5.288 -2.388 11.448 Atomic orbital electron populations 1.86769 1.15229 1.35731 1.96156 1.25605 0.86073 1.15402 0.94791 0.84633 0.80086 0.71177 0.82300 1.15990 1.15617 1.17489 1.20624 0.95934 0.92195 0.97650 1.21189 0.97456 1.02377 0.90363 1.21070 0.98415 0.91089 0.91919 1.98464 1.83555 1.72912 1.44348 1.21767 1.04939 0.92911 0.96695 1.96992 1.86308 1.76051 1.31683 1.21519 0.96089 1.03077 0.89853 1.17599 1.02840 0.89074 0.86833 1.85750 1.56589 1.70733 1.45889 1.02834 0.72810 0.73803 0.73597 1.93738 1.71531 1.79088 1.45897 1.93705 1.62638 1.53682 1.84589 1.31696 1.04121 1.20580 1.18051 1.21317 0.90896 1.02168 0.90658 1.27387 0.50572 0.95817 0.95437 2.00000 1.99127 1.27717 1.93802 1.99920 1.94492 1.33579 1.87086 1.99920 1.96673 1.47306 1.73720 1.99918 1.97827 1.19443 1.99440 1.99922 1.88425 1.27276 1.97663 1.22835 0.93736 0.94171 0.95748 1.22516 0.86955 1.03950 0.91923 1.22333 1.00564 0.87992 0.88974 0.76397 0.88818 0.81126 0.79280 0.79954 0.77713 0.73535 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 468. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.54 12.63 -148.98 -1.88 -0.34 16 2 C -0.11 0.25 2.28 71.24 0.16 0.41 16 3 Si 1.00 -1.43 25.76 68.60 1.77 0.34 16 4 H -0.24 0.54 6.72 99.48 0.67 1.21 16 5 H -0.23 0.36 7.11 99.48 0.71 1.07 16 6 H -0.25 -0.09 7.11 99.48 0.71 0.61 16 7 C -0.06 0.13 4.87 -19.77 -0.10 0.04 16 8 C -0.09 0.13 8.44 22.27 0.19 0.32 16 9 C 0.01 0.00 6.32 22.35 0.14 0.14 16 10 Cl -0.02 -0.04 27.73 -2.72 -0.08 -0.11 16 11 C -0.08 0.10 6.22 22.32 0.14 0.24 16 12 Br 0.00 0.00 32.52 -20.37 -0.66 -0.66 16 13 C -0.08 0.51 8.17 22.38 0.18 0.69 16 14 C 0.08 -0.41 4.72 22.50 0.11 -0.30 16 15 O -0.63 5.63 9.15 -61.93 -0.57 5.06 16 16 S 2.68 -18.66 5.17 -56.49 -0.29 -18.96 16 17 O -0.90 3.83 17.49 -118.78 -2.08 1.76 16 18 O -0.95 1.26 14.40 -118.78 -1.71 -0.45 16 19 C -0.66 7.89 4.67 22.27 0.10 8.00 16 20 C -0.03 0.19 7.16 22.27 0.16 0.35 16 21 C 0.31 -1.13 4.82 22.27 0.11 -1.03 16 22 F -0.21 -4.88 16.68 44.97 0.75 -4.13 16 23 F -0.15 -1.57 15.31 44.97 0.69 -0.88 16 24 F -0.18 -2.70 15.31 44.97 0.69 -2.01 16 25 F -0.17 -2.06 15.32 44.97 0.69 -1.37 16 26 F -0.13 -1.57 15.31 44.97 0.69 -0.88 16 27 C -0.05 0.67 8.62 22.27 0.19 0.86 16 28 C -0.04 0.85 10.05 22.27 0.22 1.07 16 29 C 0.02 -0.39 9.52 22.27 0.21 -0.18 16 30 H 0.39 -3.54 8.76 -74.05 -0.65 -4.19 16 31 H 0.09 -0.40 6.26 -2.39 -0.01 -0.42 16 32 H 0.17 -0.65 4.89 -2.91 -0.01 -0.67 16 33 H 0.19 -2.54 7.39 -2.91 -0.02 -2.56 16 34 H 0.18 -0.59 6.81 -2.91 -0.02 -0.61 16 35 H 0.21 -3.25 7.40 -2.91 -0.02 -3.27 16 36 H 0.25 -8.24 8.06 -2.91 -0.02 -8.27 16 37 H 0.23 -6.19 7.80 -2.91 -0.02 -6.21 16 Total: 0.00 -36.45 386.96 1.12 -35.33 By element: Atomic # 1 Polarization: -24.61 SS G_CDS: 1.30 Total: -23.31 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 1.82 Total: 10.61 kcal Atomic # 8 Polarization: 12.27 SS G_CDS: -6.24 Total: 6.03 kcal Atomic # 9 Polarization: -12.77 SS G_CDS: 3.50 Total: -9.27 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: 1.77 Total: 0.34 kcal Atomic # 16 Polarization: -18.66 SS G_CDS: -0.29 Total: -18.96 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.11 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.66 Total: -0.66 kcal Total: -36.45 1.12 -35.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15163264_9043274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 343.194 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 306.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 307.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.97 seconds