Wall clock time and date at job start Mon Mar 8 2021 10:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47120 * 2 1 4 4 C 1.86300 * 109.46972 * 239.99956 * 2 1 3 5 5 C 1.86309 * 109.46846 * 120.00041 * 2 1 3 6 6 C 1.53000 * 109.47094 * 60.00349 * 5 2 1 7 7 C 1.53001 * 109.46848 * 180.02562 * 6 5 2 8 8 S 1.81399 * 109.46782 * 179.97438 * 7 6 5 9 9 O 1.42104 * 110.54074 * 68.37530 * 8 7 6 10 10 O 1.42096 * 110.54291 * 291.61832 * 8 7 6 11 11 O 1.52208 * 104.44506 * 179.97438 * 8 7 6 12 12 C 1.35897 * 113.99871 * 75.00296 * 11 8 7 13 13 C 1.38711 * 120.05559 * 270.01505 * 12 11 8 14 14 C 1.38162 * 119.94884 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.97608 * 179.97438 * 14 13 12 16 16 F 1.39904 * 109.46690 * 90.00204 * 15 14 13 17 17 F 1.39896 * 109.47419 * 210.00118 * 15 14 13 18 18 F 1.39896 * 109.47327 * 330.00531 * 15 14 13 19 19 C 1.38249 * 120.05319 * 0.02562 * 14 13 12 20 20 C 1.38295 * 120.10804 * 359.74493 * 19 14 13 21 21 C 1.38122 * 120.05713 * 0.51162 * 20 19 14 22 22 C 1.50697 * 120.02866 * 179.77110 * 21 20 19 23 23 O 1.42906 * 109.46831 * 254.72078 * 22 21 20 24 24 Si 1.86300 * 109.47007 * 14.71467 * 22 21 20 25 25 H 1.48503 * 109.46942 * 60.00611 * 24 22 21 26 26 H 1.48503 * 109.47276 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47372 * 300.00074 * 24 22 21 28 28 H 1.09001 * 109.47072 * 300.00147 * 1 2 3 29 29 H 1.09000 * 109.47226 * 59.99915 * 1 2 3 30 30 H 1.08996 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46965 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47140 * 300.00137 * 3 2 1 33 33 H 1.09001 * 109.47269 * 59.99973 * 3 2 1 34 34 H 1.08996 * 109.47085 * 299.99687 * 4 2 1 35 35 H 1.09000 * 109.47039 * 60.00015 * 4 2 1 36 36 H 1.08999 * 109.46904 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47131 * 299.99775 * 5 2 1 38 38 H 1.09003 * 109.46181 * 179.97438 * 5 2 1 39 39 H 1.08998 * 109.47245 * 59.99338 * 6 5 2 40 40 H 1.08997 * 109.46639 * 299.99239 * 6 5 2 41 41 H 1.09001 * 109.47319 * 59.99461 * 7 6 5 42 42 H 1.09008 * 109.46919 * 299.99508 * 7 6 5 43 43 H 1.08005 * 120.02584 * 359.96469 * 13 12 11 44 44 H 1.07999 * 119.94520 * 179.97438 * 19 14 13 45 45 H 1.07997 * 119.96792 * 180.26670 * 20 19 14 46 46 H 1.09000 * 109.47374 * 134.71651 * 22 21 20 47 47 H 0.96693 * 114.00047 * 60.00191 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5212 6 6 1.9740 -2.3208 1.5211 7 6 2.4835 -3.0418 2.7708 8 16 1.8782 -4.7519 2.7710 9 8 2.4909 -5.4978 1.7282 10 8 0.4708 -4.7826 2.9646 11 8 2.4464 -5.3556 4.0475 12 6 1.8154 -4.9483 5.1801 13 6 2.2574 -3.8192 5.8539 14 6 1.6139 -3.4068 7.0048 15 6 2.0938 -2.1807 7.7377 16 9 1.4312 -1.0524 7.2426 17 9 1.8239 -2.3181 9.1035 18 9 3.4719 -2.0331 7.5472 19 6 0.5306 -4.1188 7.4854 20 6 0.0851 -5.2421 6.8128 21 6 0.7283 -5.6614 5.6647 22 6 0.2455 -6.8885 4.9352 23 8 1.1451 -7.9719 5.1783 24 14 -1.4548 -7.3445 5.5447 25 1 -2.3897 -6.2186 5.2921 26 1 -1.9304 -8.5540 4.8263 27 1 -1.3997 -7.6247 7.0020 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1207 2.2702 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1206 -0.3644 -2.4111 36 1 3.5740 -0.8786 -1.5209 37 1 2.1207 -0.3644 2.4112 38 1 3.5740 -0.8786 1.5209 39 1 2.3373 -2.8346 0.6311 40 1 0.8840 -2.3207 1.5212 41 1 2.1198 -2.5279 3.6605 42 1 3.5735 -3.0418 2.7712 43 1 3.1040 -3.2630 5.4792 44 1 0.0291 -3.7951 8.3855 45 1 -0.7640 -5.7940 7.1878 46 1 0.2050 -6.6829 3.8655 47 1 1.2308 -8.2101 6.1116 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15244782_14927650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:28 Heat of formation + Delta-G solvation = -299.733819 kcal Electronic energy + Delta-G solvation = -35454.729044 eV Core-core repulsion = 30246.410444 eV Total energy + Delta-G solvation = -5208.318599 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 400.099 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -51.27527 -48.79111 -48.73128 -42.67005 -39.78329 -38.52602 -37.98748 -37.40926 -35.91963 -33.78436 -31.97102 -29.63952 -28.82352 -28.37060 -28.31379 -28.21404 -25.65234 -25.04877 -23.27031 -22.90404 -21.69983 -20.11589 -19.69862 -19.60175 -19.18804 -18.68865 -18.51457 -18.18655 -17.26426 -16.95038 -16.54119 -16.22940 -15.90755 -15.72465 -15.65464 -15.40489 -15.30007 -15.14955 -14.89110 -14.87248 -14.83328 -14.54686 -14.39128 -14.19953 -14.11568 -14.05547 -13.97386 -13.68863 -13.60552 -13.53147 -13.51446 -13.41496 -13.35427 -13.16380 -13.06469 -13.03675 -12.98817 -12.82910 -12.30082 -12.17340 -11.89176 -11.85289 -11.75860 -10.72399 -10.69269 -10.63245 -10.61049 -10.50314 -10.32401 -1.27972 -0.61105 -0.30397 0.78725 0.99007 1.34237 1.44820 1.50491 1.84461 1.89290 1.89671 2.00075 2.00376 2.37174 2.50883 2.67986 2.72202 2.83592 3.19457 3.24312 3.27693 3.44265 3.49122 3.58997 3.64174 3.73395 3.80728 4.11769 4.12502 4.31281 4.35895 4.52213 4.57391 4.61890 4.70030 4.75787 4.78117 4.80959 4.82846 4.85849 4.86370 4.86986 4.87838 5.06501 5.24490 5.43363 5.58953 5.65838 5.66545 6.59783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.472 4.472 2 Si 1.068 2.932 3 C -0.463 4.463 4 C -0.475 4.475 5 C -0.411 4.411 6 C -0.120 4.120 7 C -0.629 4.629 8 S 2.569 3.431 9 O -0.964 6.964 10 O -0.967 6.967 11 O -0.660 6.660 12 C 0.068 3.932 13 C -0.082 4.082 14 C -0.168 4.168 15 C 0.516 3.484 16 F -0.173 7.173 17 F -0.171 7.171 18 F -0.177 7.177 19 C -0.034 4.034 20 C -0.107 4.107 21 C -0.072 4.072 22 C -0.125 4.125 23 O -0.546 6.546 24 Si 0.981 3.019 25 H -0.243 1.243 26 H -0.271 1.271 27 H -0.205 1.205 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.177 0.823 44 H 0.183 0.817 45 H 0.176 0.824 46 H 0.106 0.894 47 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 3.785 4.969 6.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.260 2.740 3 C -0.570 4.570 4 C -0.580 4.580 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.760 4.760 8 S 2.670 3.330 9 O -0.962 6.962 10 O -0.965 6.965 11 O -0.618 6.618 12 C 0.026 3.974 13 C -0.102 4.102 14 C -0.170 4.170 15 C 0.462 3.538 16 F -0.155 7.155 17 F -0.152 7.152 18 F -0.158 7.158 19 C -0.052 4.052 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.233 4.233 23 O -0.354 6.354 24 Si 0.799 3.201 25 H -0.166 1.166 26 H -0.196 1.196 27 H -0.127 1.127 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.176 0.824 42 H 0.184 0.816 43 H 0.194 0.806 44 H 0.200 0.800 45 H 0.193 0.807 46 H 0.124 0.876 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.589 2.824 4.418 5.847 hybrid contribution 1.182 0.677 -0.135 1.369 sum -1.406 3.501 4.282 5.707 Atomic orbital electron populations 1.26401 1.22377 1.04453 1.04545 0.78310 0.65283 0.65390 0.64993 1.26274 1.06438 1.19858 1.04412 1.26443 1.06606 1.08365 1.16625 1.26246 1.07143 0.99297 1.17040 1.21234 1.02540 0.97878 0.94246 1.30833 1.15274 1.19852 1.10046 1.06169 0.74483 0.78881 0.73456 1.93615 1.78002 1.70029 1.54575 1.93588 1.32534 1.86966 1.83426 1.85743 1.69771 1.76693 1.29625 1.17798 0.95021 0.96764 0.87796 1.21295 0.99921 0.94783 0.94235 1.19855 1.01265 0.97617 0.98228 1.18043 0.75200 0.83216 0.77340 1.93269 1.80593 1.54194 1.87407 1.93231 1.93501 1.95817 1.32683 1.93225 1.31475 1.96202 1.94897 1.21525 0.92281 0.91927 0.99485 1.21401 1.00661 0.97295 0.93064 1.20962 0.93431 0.96985 0.96075 1.25703 1.07238 0.85383 1.04964 1.86591 1.66328 1.49570 1.32866 0.85298 0.72095 0.80853 0.81852 1.16584 1.19562 1.12717 0.90908 0.91511 0.91330 0.91150 0.91601 0.91042 0.91447 0.91495 0.91083 0.88749 0.88882 0.89655 0.89134 0.82368 0.81642 0.80617 0.79979 0.80655 0.87621 0.75603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.66 8.65 113.37 0.98 2.64 16 2 Si 1.07 -7.05 12.19 68.60 0.84 -6.22 16 3 C -0.46 1.98 8.65 113.37 0.98 2.97 16 4 C -0.47 1.34 8.65 113.37 0.98 2.32 16 5 C -0.41 2.87 4.45 71.98 0.32 3.19 16 6 C -0.12 0.48 4.59 30.59 0.14 0.62 16 7 C -0.63 2.82 5.46 71.98 0.39 3.22 16 8 S 2.57 12.94 4.93 -56.49 -0.28 12.66 16 9 O -0.96 -12.77 18.09 -118.57 -2.15 -14.92 16 10 O -0.97 -7.22 14.25 -118.57 -1.69 -8.91 16 11 O -0.66 -3.33 9.47 -61.49 -0.58 -3.91 16 12 C 0.07 0.11 4.78 22.51 0.11 0.22 16 13 C -0.08 0.28 7.81 22.36 0.17 0.45 16 14 C -0.17 0.77 5.45 -19.88 -0.11 0.66 16 15 C 0.52 -1.78 3.36 71.23 0.24 -1.54 16 16 F -0.17 0.37 17.30 44.97 0.78 1.15 16 17 F -0.17 0.48 16.46 44.97 0.74 1.22 16 18 F -0.18 0.33 16.46 44.97 0.74 1.07 16 19 C -0.03 0.25 9.40 22.29 0.21 0.46 16 20 C -0.11 0.62 8.66 22.26 0.19 0.81 16 21 C -0.07 -0.04 4.68 -19.77 -0.09 -0.13 16 22 C -0.13 -0.39 2.24 71.23 0.16 -0.23 16 23 O -0.55 -1.85 12.88 -148.98 -1.92 -3.76 16 24 Si 0.98 -1.87 25.48 68.60 1.75 -0.12 16 25 H -0.24 0.30 7.11 99.48 0.71 1.01 16 26 H -0.27 -0.69 7.11 99.48 0.71 0.02 16 27 H -0.21 1.70 6.74 99.48 0.67 2.37 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 31 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 32 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 33 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 35 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 36 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 37 H 0.09 -0.84 7.96 -2.39 -0.02 -0.86 16 38 H 0.09 -0.80 7.96 -2.39 -0.02 -0.81 16 39 H 0.08 -0.37 7.79 -2.39 -0.02 -0.39 16 40 H 0.09 -0.49 7.79 -2.39 -0.02 -0.51 16 41 H 0.16 -1.47 6.60 -2.39 -0.02 -1.48 16 42 H 0.17 -1.49 8.14 -2.39 -0.02 -1.51 16 43 H 0.18 -1.48 7.04 -2.91 -0.02 -1.50 16 44 H 0.18 -2.38 7.60 -2.91 -0.02 -2.40 16 45 H 0.18 -1.94 4.89 -2.91 -0.01 -1.95 16 46 H 0.11 0.80 5.44 -2.39 -0.01 0.79 16 47 H 0.39 -2.48 8.70 -74.06 -0.64 -3.12 16 Total: 0.00 -22.63 406.54 4.00 -18.63 By element: Atomic # 1 Polarization: -13.63 SS G_CDS: 1.09 Total: -12.54 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 4.68 Total: 15.66 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -6.34 Total: -31.51 kcal Atomic # 9 Polarization: 1.18 SS G_CDS: 2.26 Total: 3.44 kcal Atomic # 14 Polarization: -8.93 SS G_CDS: 2.58 Total: -6.34 kcal Atomic # 16 Polarization: 12.94 SS G_CDS: -0.28 Total: 12.66 kcal Total: -22.63 4.00 -18.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15244782_14927650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -281.100 kcal (2) G-P(sol) polarization free energy of solvation -22.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -303.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds