Wall clock time and date at job start Mon Mar 8 2021 11:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46864 * 2 1 4 4 C 1.34232 * 116.99587 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00345 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99732 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46711 * 299.99236 * 6 4 3 8 8 C 1.52997 * 109.47471 * 59.99785 * 6 4 3 9 9 C 1.52997 * 109.47332 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47064 * 299.99819 * 9 8 6 11 11 F 1.39895 * 109.47260 * 179.97438 * 10 9 8 12 12 C 1.53007 * 109.47194 * 299.99982 * 10 9 8 13 13 S 1.81400 * 109.47132 * 305.00027 * 12 10 9 14 14 O 1.42097 * 110.53962 * 68.37475 * 13 12 10 15 15 O 1.42103 * 110.54071 * 291.62324 * 13 12 10 16 16 O 1.52197 * 104.44936 * 179.97438 * 13 12 10 17 17 C 1.35905 * 114.00079 * 74.99866 * 16 13 12 18 18 C 1.38706 * 120.05552 * 89.99932 * 17 16 13 19 19 C 1.50707 * 120.02846 * 359.95501 * 18 17 16 20 20 O 1.42903 * 109.46925 * 75.01916 * 19 18 17 21 21 Si 1.86296 * 109.47264 * 195.02247 * 19 18 17 22 22 C 1.38162 * 119.94729 * 179.97438 * 18 17 16 23 23 C 1.38247 * 120.05352 * 359.97438 * 22 18 17 24 24 C 1.38285 * 120.11130 * 0.27883 * 23 22 18 25 25 C 1.50696 * 119.97337 * 179.72052 * 24 23 22 26 26 F 1.39898 * 109.46878 * 0.02562 * 25 24 23 27 27 F 1.39897 * 109.47386 * 119.99919 * 25 24 23 28 28 F 1.39902 * 109.47222 * 240.00209 * 25 24 23 29 29 C 1.38123 * 120.05549 * 359.44969 * 24 23 22 30 30 C 1.53007 * 109.47256 * 59.99827 * 10 9 8 31 31 C 1.52997 * 109.47225 * 300.00074 * 30 10 9 32 32 H 1.08996 * 109.46747 * 300.00292 * 1 2 3 33 33 H 1.09002 * 109.46834 * 60.00244 * 1 2 3 34 34 H 1.08994 * 109.47141 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.46747 * 239.99708 * 2 1 3 36 36 H 1.09002 * 109.46834 * 119.99756 * 2 1 3 37 37 H 1.09000 * 109.47023 * 300.00307 * 8 6 4 38 38 H 1.09007 * 109.47078 * 59.99671 * 8 6 4 39 39 H 1.09003 * 109.47229 * 180.02562 * 9 8 6 40 40 H 1.08997 * 109.47154 * 59.99894 * 9 8 6 41 41 H 1.08996 * 109.47101 * 184.99674 * 12 10 9 42 42 H 1.09004 * 109.46870 * 65.00188 * 12 10 9 43 43 H 1.09007 * 109.47299 * 315.02639 * 19 18 17 44 44 H 0.96697 * 114.00409 * 180.02562 * 20 19 18 45 45 H 1.48502 * 109.99950 * 300.00106 * 21 19 18 46 46 H 1.48492 * 109.99870 * 61.32183 * 21 19 18 47 47 H 1.07998 * 119.97579 * 180.02562 * 22 18 17 48 48 H 1.08002 * 119.94131 * 179.97438 * 23 22 18 49 49 H 1.08006 * 120.03140 * 180.27952 * 29 24 23 50 50 H 1.08997 * 109.46837 * 60.00002 * 30 10 9 51 51 H 1.09000 * 109.47222 * 180.02562 * 30 10 9 52 52 H 1.08994 * 109.47084 * 179.97438 * 31 30 10 53 53 H 1.09003 * 109.47696 * 300.00187 * 31 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5844 3.4700 -0.8896 8 6 3.4498 3.6837 1.2498 9 6 4.0340 5.0978 1.2500 10 6 5.5619 5.0182 1.2490 11 9 6.0962 6.3111 1.2486 12 6 6.0346 4.2709 2.4977 13 16 5.3530 5.0716 3.9759 14 8 3.9450 4.8896 4.0370 15 8 5.9346 6.3549 4.1609 16 8 5.8884 4.2453 5.1364 17 6 7.2014 4.4637 5.4110 18 6 7.5675 5.4500 6.3149 19 6 6.5093 6.2817 6.9931 20 8 5.8679 5.5033 8.0053 21 14 7.2996 7.7797 7.7691 22 6 8.9029 5.6697 6.5928 23 6 9.8740 4.9070 5.9711 24 6 9.5120 3.9266 5.0656 25 6 10.5734 3.1013 4.3851 26 9 11.8363 3.5085 4.8284 27 9 10.3841 1.7504 4.6953 28 9 10.4853 3.2785 3.0001 29 6 8.1780 3.6993 4.7886 30 6 6.0330 4.2719 -0.0008 31 6 5.4487 2.8579 -0.0010 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.3613 3.7407 1.2504 38 1 3.7861 3.1511 2.1394 39 1 3.6989 5.6293 2.1407 40 1 3.6973 5.6301 0.3605 41 1 7.1234 4.2912 2.5429 42 1 5.6920 3.2370 2.4538 43 1 5.7708 6.6005 6.2574 44 1 5.1734 5.9760 8.4841 45 1 8.3085 7.3585 8.7741 46 1 7.9428 8.6141 6.7226 47 1 9.1884 6.4373 7.2968 48 1 10.9174 5.0806 6.1894 49 1 7.8955 2.9304 4.0847 50 1 5.6963 4.8043 -0.8904 51 1 7.1215 4.2149 -0.0013 52 1 5.7840 2.3264 -0.8916 53 1 5.7854 2.3254 0.8885 There are 84 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 84 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15244782_16464696.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:31:59 Heat of formation + Delta-G solvation = -374.467277 kcal Electronic energy + Delta-G solvation = -50457.639999 eV Core-core repulsion = 43696.403939 eV Total energy + Delta-G solvation = -6761.236061 eV No. of doubly occupied orbitals = 84 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 471.120 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -51.38621 -49.11990 -48.89530 -48.84198 -42.84794 -41.90154 -39.95584 -39.69271 -38.65311 -37.97220 -37.73051 -37.54092 -34.10361 -33.61478 -32.55240 -32.16110 -32.11792 -29.44570 -28.82391 -25.73809 -25.46785 -25.13209 -24.24617 -23.65375 -23.39391 -22.13946 -21.84641 -20.75292 -20.04425 -19.75286 -19.71227 -19.51279 -18.84588 -18.76256 -18.62174 -18.41586 -18.04096 -17.72230 -17.46909 -17.40473 -17.29916 -16.82399 -16.41687 -16.15967 -16.06976 -15.75236 -15.62834 -15.46662 -15.38256 -15.26033 -15.18597 -15.03208 -15.00828 -14.97679 -14.76272 -14.60924 -14.52905 -14.40452 -14.24750 -14.07015 -13.97374 -13.79009 -13.72630 -13.63521 -13.57248 -13.41685 -13.37362 -13.24108 -13.17376 -12.93854 -12.86619 -12.77220 -12.53397 -12.38984 -12.33681 -12.07159 -12.00963 -11.67438 -11.55469 -11.44714 -11.22921 -10.81142 -10.57949 -10.49296 -5.03458 -1.51019 -0.78691 -0.50970 0.57031 1.03974 1.10824 1.30637 1.56504 1.57587 1.67390 1.82505 2.08534 2.36653 2.45157 2.68869 2.70068 2.94840 2.99970 3.02559 3.08698 3.14218 3.26294 3.34541 3.40297 3.49405 3.54701 3.60096 3.73240 3.74481 3.84480 3.90031 3.95588 3.95685 4.01808 4.07971 4.09415 4.15612 4.22001 4.29694 4.33141 4.42225 4.47203 4.51276 4.58640 4.60249 4.70927 4.79052 4.82042 4.87501 4.87894 4.94809 5.04541 5.05987 5.11341 5.16936 5.41369 6.60628 6.66498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.535 6.535 6 C -0.082 4.082 7 H 0.144 0.856 8 C -0.110 4.110 9 C -0.174 4.174 10 C 0.135 3.865 11 F -0.203 7.203 12 C -0.687 4.687 13 S 2.581 3.419 14 O -0.932 6.932 15 O -0.956 6.956 16 O -0.654 6.654 17 C 0.063 3.937 18 C -0.033 4.033 19 C -0.127 4.127 20 O -0.555 6.555 21 Si 0.784 3.216 22 C -0.115 4.115 23 C -0.036 4.036 24 C -0.168 4.168 25 C 0.519 3.481 26 F -0.169 7.169 27 F -0.174 7.174 28 F -0.171 7.171 29 C -0.081 4.081 30 C -0.122 4.122 31 C -0.108 4.108 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.170 0.830 42 H 0.183 0.817 43 H 0.078 0.922 44 H 0.406 0.594 45 H -0.252 1.252 46 H -0.275 1.275 47 H 0.164 0.836 48 H 0.185 0.815 49 H 0.181 0.819 50 H 0.108 0.892 51 H 0.100 0.900 52 H 0.092 0.908 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 2.153 -0.488 2.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.425 6.425 6 C -0.101 4.101 7 H 0.161 0.839 8 C -0.147 4.147 9 C -0.212 4.212 10 C 0.115 3.885 11 F -0.183 7.183 12 C -0.815 4.815 13 S 2.679 3.321 14 O -0.930 6.930 15 O -0.955 6.955 16 O -0.613 6.613 17 C 0.022 3.978 18 C -0.035 4.035 19 C -0.234 4.234 20 O -0.365 6.365 21 Si 0.683 3.317 22 C -0.132 4.132 23 C -0.054 4.054 24 C -0.170 4.170 25 C 0.464 3.536 26 F -0.150 7.150 27 F -0.155 7.155 28 F -0.153 7.153 29 C -0.101 4.101 30 C -0.160 4.160 31 C -0.146 4.146 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.188 0.812 42 H 0.200 0.800 43 H 0.096 0.904 44 H 0.258 0.742 45 H -0.177 1.177 46 H -0.201 1.201 47 H 0.181 0.819 48 H 0.202 0.798 49 H 0.198 0.802 50 H 0.126 0.874 51 H 0.118 0.882 52 H 0.110 0.890 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.181 2.133 -0.050 2.141 hybrid contribution 0.046 -1.371 -0.929 1.657 sum -0.135 0.761 -0.980 1.248 Atomic orbital electron populations 1.21831 0.90810 1.04233 1.03770 1.23257 0.96880 0.79347 1.02523 1.86519 1.24254 1.33452 1.83377 1.24141 0.80660 0.93061 0.71221 1.90675 1.61018 1.44237 1.46571 1.21330 0.96752 0.88788 1.03186 0.83879 1.21529 1.03509 0.93583 0.96081 1.22681 0.91745 0.99619 1.07106 1.20658 0.94304 0.78390 0.95126 1.92973 1.87939 1.39919 1.97495 1.31670 1.16734 1.16563 1.16583 1.05901 0.75408 0.74750 0.76051 1.93650 1.28553 1.85621 1.85173 1.93632 1.78409 1.40591 1.82843 1.85725 1.31316 1.78043 1.66197 1.17774 0.77726 0.99664 1.02657 1.20156 0.95985 0.93397 0.93990 1.25470 0.98903 1.03548 0.95461 1.86436 1.56509 1.42946 1.50634 0.93496 0.81997 0.75518 0.80654 1.21253 0.90383 1.00846 1.00729 1.21555 1.02793 0.90469 0.90598 1.19867 0.92611 1.01320 1.03192 1.17931 0.80735 0.78038 0.76870 1.93211 1.42508 1.90166 1.89088 1.93264 1.95066 1.34474 1.92733 1.93257 1.96165 1.95112 1.30719 1.21310 0.90829 0.98384 0.99567 1.22071 1.03237 0.95042 0.95644 1.21551 0.91423 0.96547 1.05054 0.91356 0.91109 0.88636 0.91182 0.91498 0.87887 0.91514 0.90342 0.85587 0.81194 0.79998 0.90437 0.74177 1.17727 1.20075 0.81900 0.79777 0.80218 0.87364 0.88161 0.88952 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.29 71.98 0.74 1.26 16 2 C 0.05 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.95 10.12 -51.43 -0.52 -1.47 16 4 C 0.46 1.30 7.26 71.24 0.52 1.82 16 5 O -0.54 -4.55 15.73 21.98 0.35 -4.20 16 6 C -0.08 0.30 2.63 -11.54 -0.03 0.27 16 7 H 0.14 -1.22 8.14 -2.39 -0.02 -1.24 16 8 C -0.11 0.24 4.56 30.59 0.14 0.38 16 9 C -0.17 0.32 4.62 30.59 0.14 0.46 16 10 C 0.13 -0.21 1.11 -10.79 -0.01 -0.22 16 11 F -0.20 -0.69 16.37 44.97 0.74 0.04 16 12 C -0.69 1.33 4.08 71.98 0.29 1.62 16 13 S 2.58 14.88 4.17 -56.49 -0.24 14.65 16 14 O -0.93 -8.82 14.90 -118.57 -1.77 -10.59 16 15 O -0.96 -9.12 13.94 -118.57 -1.65 -10.77 16 16 O -0.65 -4.30 9.47 -61.57 -0.58 -4.89 16 17 C 0.06 0.35 4.78 22.51 0.11 0.45 16 18 C -0.03 -0.19 4.71 -19.77 -0.09 -0.28 16 19 C -0.13 -0.52 2.23 71.24 0.16 -0.37 16 20 O -0.55 -1.70 12.86 -148.98 -1.92 -3.62 16 21 Si 0.78 -1.46 30.20 68.60 2.07 0.61 16 22 C -0.11 -0.14 8.66 22.25 0.19 0.05 16 23 C -0.04 0.06 9.43 22.28 0.21 0.27 16 24 C -0.17 0.07 5.37 -19.88 -0.11 -0.04 16 25 C 0.52 -0.20 3.32 71.23 0.24 0.03 16 26 F -0.17 0.06 15.97 44.97 0.72 0.78 16 27 F -0.17 -0.26 17.23 44.97 0.77 0.52 16 28 F -0.17 0.00 17.24 44.97 0.78 0.77 16 29 C -0.08 -0.03 8.01 22.37 0.18 0.15 16 30 C -0.12 0.75 5.19 30.60 0.16 0.91 16 31 C -0.11 0.51 4.22 30.60 0.13 0.64 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.07 0.05 8.13 -2.39 -0.02 0.03 16 36 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 37 H 0.10 -0.29 8.11 -2.39 -0.02 -0.31 16 38 H 0.07 -0.07 6.06 -2.38 -0.01 -0.08 16 39 H 0.08 0.13 5.40 -2.39 -0.01 0.12 16 40 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.17 -1.06 6.61 -2.39 -0.02 -1.07 16 42 H 0.18 -1.16 4.83 -2.39 -0.01 -1.17 16 43 H 0.08 0.44 5.43 -2.38 -0.01 0.43 16 44 H 0.41 -3.00 8.74 -74.06 -0.65 -3.65 16 45 H -0.25 0.14 6.75 99.48 0.67 0.81 16 46 H -0.27 -0.91 7.11 99.48 0.71 -0.21 16 47 H 0.16 -0.34 4.90 -2.91 -0.01 -0.36 16 48 H 0.18 -1.40 7.15 -2.91 -0.02 -1.42 16 49 H 0.18 -1.06 7.50 -2.91 -0.02 -1.08 16 50 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 51 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 52 H 0.09 -0.43 8.10 -2.39 -0.02 -0.45 16 53 H 0.08 -0.33 6.28 -2.39 -0.01 -0.34 16 Total: 0.00 -26.39 441.06 2.53 -23.86 By element: Atomic # 1 Polarization: -13.98 SS G_CDS: 0.38 Total: -13.60 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 3.41 Total: 7.89 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -6.09 Total: -35.53 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 3.00 Total: 2.12 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.07 Total: 0.61 kcal Atomic # 16 Polarization: 14.88 SS G_CDS: -0.24 Total: 14.65 kcal Total: -26.39 2.53 -23.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15244782_16464696.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -350.605 kcal (2) G-P(sol) polarization free energy of solvation -26.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -376.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -374.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds