Wall clock time and date at job start Mon Mar 8 2021 11:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47339 * 2 1 4 4 C 1.34230 * 117.00390 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99647 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00150 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.47083 * 59.99504 * 6 4 3 8 8 C 1.53005 * 109.47092 * 179.97438 * 6 4 3 9 9 C 1.52996 * 109.47164 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.46846 * 299.99717 * 9 8 6 11 11 F 1.39901 * 109.47544 * 299.99999 * 10 9 8 12 12 C 1.53006 * 109.47054 * 180.02562 * 10 9 8 13 13 S 1.81400 * 109.47145 * 185.00248 * 12 10 9 14 14 O 1.42109 * 110.54012 * 291.61993 * 13 12 10 15 15 O 1.42095 * 110.54467 * 68.37106 * 13 12 10 16 16 O 1.52198 * 104.44877 * 179.97438 * 13 12 10 17 17 C 1.35900 * 114.00435 * 74.99535 * 16 13 12 18 18 C 1.38710 * 120.05381 * 89.99502 * 17 16 13 19 19 C 1.50710 * 120.02905 * 359.97438 * 18 17 16 20 20 O 1.42902 * 109.46884 * 74.99448 * 19 18 17 21 21 Si 1.86295 * 109.46917 * 194.99457 * 19 18 17 22 22 C 1.38167 * 119.94582 * 180.02562 * 18 17 16 23 23 C 1.38242 * 120.05493 * 0.02562 * 22 18 17 24 24 C 1.38293 * 120.10747 * 359.97438 * 23 22 18 25 25 C 1.50702 * 119.96999 * 180.02562 * 24 23 22 26 26 F 1.39902 * 109.47212 * 359.97438 * 25 24 23 27 27 F 1.39898 * 109.47319 * 119.99569 * 25 24 23 28 28 F 1.39894 * 109.47387 * 239.99883 * 25 24 23 29 29 C 1.38119 * 120.05675 * 359.76400 * 24 23 22 30 30 C 1.52997 * 109.47447 * 60.00290 * 10 9 8 31 31 C 1.52999 * 109.46953 * 299.99695 * 6 4 3 32 32 H 1.08996 * 109.47314 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46920 * 300.00108 * 1 2 3 34 34 H 1.09000 * 109.46895 * 60.00012 * 1 2 3 35 35 H 1.09000 * 109.46920 * 239.99892 * 2 1 3 36 36 H 1.09000 * 109.46895 * 119.99988 * 2 1 3 37 37 H 1.08998 * 109.47276 * 59.99367 * 8 6 4 38 38 H 1.09001 * 109.46504 * 299.99883 * 8 6 4 39 39 H 1.09001 * 109.47165 * 179.97438 * 9 8 6 40 40 H 1.08995 * 109.47118 * 59.99482 * 9 8 6 41 41 H 1.09001 * 109.47002 * 304.99688 * 12 10 9 42 42 H 1.08993 * 109.46955 * 65.00125 * 12 10 9 43 43 H 1.08995 * 109.46991 * 314.99453 * 19 18 17 44 44 H 0.96702 * 113.99807 * 179.97438 * 20 19 18 45 45 H 1.48501 * 110.00438 * 299.99658 * 21 19 18 46 46 H 1.48502 * 110.00061 * 61.32107 * 21 19 18 47 47 H 1.07995 * 119.97586 * 180.02562 * 22 18 17 48 48 H 1.07999 * 119.94885 * 179.97438 * 23 22 18 49 49 H 1.08006 * 120.02339 * 180.28150 * 29 24 23 50 50 H 1.09004 * 109.47446 * 59.99512 * 30 10 9 51 51 H 1.08992 * 109.47518 * 179.97438 * 30 10 9 52 52 H 1.09004 * 109.47196 * 299.99672 * 31 6 4 53 53 H 1.08997 * 109.47394 * 59.99888 * 31 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4690 0.8904 8 6 5.4487 2.8573 -0.0001 9 6 6.0335 4.2711 0.0011 10 6 5.5619 5.0190 -1.2475 11 9 5.9930 4.3370 -2.3904 12 6 6.1472 6.4327 -1.2467 13 16 5.4718 7.3676 -2.6468 14 8 5.9588 6.8463 -3.8759 15 8 4.0867 7.6205 -2.4559 16 8 6.1220 8.7393 -2.5365 17 6 7.4248 8.7663 -2.9224 18 6 7.7524 9.0307 -4.2441 19 6 6.6638 9.2879 -5.2541 20 8 6.1314 10.5993 -5.0569 21 14 7.3684 9.1558 -6.9736 22 6 9.0777 9.0571 -4.6341 23 6 10.0766 8.8197 -3.7084 24 6 9.7525 8.5558 -2.3902 25 6 10.8440 8.2980 -1.3836 26 9 12.0896 8.3781 -2.0156 27 9 10.7749 9.2549 -0.3654 28 9 10.6809 7.0213 -0.8355 29 6 8.4294 8.5337 -1.9943 30 6 4.0340 5.0992 -1.2475 31 6 3.4486 3.6850 -1.2486 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 5.7846 2.3254 -0.8903 38 1 5.7846 2.3248 0.8897 39 1 7.1220 4.2140 0.0014 40 1 5.6975 4.8025 0.8914 41 1 5.8851 6.9339 -0.3149 42 1 7.2320 6.3768 -1.3366 43 1 5.8706 8.5511 -5.1288 44 1 5.4246 10.8337 -5.6739 45 1 8.4511 10.1554 -7.1572 46 1 7.8968 7.7869 -7.2022 47 1 9.3334 9.2633 -5.6628 48 1 11.1119 8.8403 -4.0153 49 1 8.1771 8.3321 -0.9636 50 1 3.6980 5.6306 -0.3570 51 1 3.6981 5.6324 -2.1367 52 1 3.7843 3.1534 -2.1391 53 1 2.3602 3.7420 -1.2481 There are 84 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 84 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15244782_16464698.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:04 Heat of formation + Delta-G solvation = -378.830987 kcal Electronic energy + Delta-G solvation = -49474.875996 eV Core-core repulsion = 42713.450710 eV Total energy + Delta-G solvation = -6761.425286 eV No. of doubly occupied orbitals = 84 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 471.120 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -51.35726 -49.12773 -48.86979 -48.80939 -42.79714 -41.80640 -39.89627 -39.15765 -38.60745 -37.94635 -37.70362 -37.48811 -34.35788 -33.97511 -32.65258 -32.15229 -32.08355 -29.24858 -28.78109 -25.70738 -25.32520 -24.94572 -24.22217 -23.55144 -23.35811 -22.07549 -21.74845 -20.90145 -20.19851 -19.76837 -19.67888 -19.41915 -18.87343 -18.75108 -18.56247 -18.33508 -17.91658 -17.72828 -17.42401 -17.25938 -17.21658 -16.77342 -16.46646 -16.22156 -16.08509 -15.72261 -15.59980 -15.38488 -15.34255 -15.23172 -15.08357 -14.98639 -14.96081 -14.94170 -14.70252 -14.57145 -14.56591 -14.36550 -14.20890 -14.04582 -13.84216 -13.74616 -13.71483 -13.56796 -13.50553 -13.37427 -13.26815 -13.23188 -13.22363 -13.17499 -12.93780 -12.65551 -12.51826 -12.33952 -12.22904 -12.06173 -11.99289 -11.77904 -11.57886 -11.39158 -11.19270 -10.77831 -10.54517 -10.47335 -5.04084 -1.45964 -0.75170 -0.46681 0.62837 1.04668 1.11250 1.33778 1.56564 1.57904 1.69648 1.82413 2.14888 2.39955 2.51051 2.72120 2.72580 2.98253 3.03188 3.10628 3.17548 3.22756 3.29281 3.43427 3.45426 3.50238 3.56837 3.65969 3.75081 3.76179 3.91618 3.94402 3.96971 3.98134 4.01876 4.10480 4.11939 4.22903 4.26399 4.29266 4.36593 4.45344 4.49071 4.54557 4.57440 4.63255 4.74833 4.78311 4.84839 4.87527 4.90335 4.96960 5.05629 5.07836 5.11420 5.21202 5.41039 6.61319 6.67741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.078 4.078 7 H 0.148 0.852 8 C -0.110 4.110 9 C -0.124 4.124 10 C 0.127 3.873 11 F -0.210 7.210 12 C -0.674 4.674 13 S 2.578 3.422 14 O -0.962 6.962 15 O -0.937 6.937 16 O -0.652 6.652 17 C 0.066 3.934 18 C -0.034 4.034 19 C -0.124 4.124 20 O -0.554 6.554 21 Si 0.780 3.220 22 C -0.117 4.117 23 C -0.038 4.038 24 C -0.169 4.169 25 C 0.519 3.481 26 F -0.171 7.171 27 F -0.173 7.173 28 F -0.171 7.171 29 C -0.078 4.078 30 C -0.177 4.177 31 C -0.109 4.109 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.206 0.794 42 H 0.168 0.832 43 H 0.079 0.921 44 H 0.406 0.594 45 H -0.253 1.253 46 H -0.278 1.278 47 H 0.161 0.839 48 H 0.182 0.818 49 H 0.188 0.812 50 H 0.135 0.865 51 H 0.077 0.923 52 H 0.061 0.939 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 2.499 1.142 3.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.097 4.097 7 H 0.165 0.835 8 C -0.147 4.147 9 C -0.162 4.162 10 C 0.108 3.892 11 F -0.190 7.190 12 C -0.803 4.803 13 S 2.677 3.323 14 O -0.961 6.961 15 O -0.935 6.935 16 O -0.610 6.610 17 C 0.024 3.976 18 C -0.036 4.036 19 C -0.231 4.231 20 O -0.364 6.364 21 Si 0.680 3.320 22 C -0.134 4.134 23 C -0.057 4.057 24 C -0.171 4.171 25 C 0.465 3.535 26 F -0.152 7.152 27 F -0.154 7.154 28 F -0.152 7.152 29 C -0.098 4.098 30 C -0.214 4.214 31 C -0.147 4.147 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.224 0.776 42 H 0.186 0.814 43 H 0.097 0.903 44 H 0.258 0.742 45 H -0.178 1.178 46 H -0.204 1.204 47 H 0.178 0.822 48 H 0.199 0.801 49 H 0.205 0.795 50 H 0.154 0.846 51 H 0.095 0.905 52 H 0.080 0.920 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.396 2.363 0.622 2.475 hybrid contribution 0.195 -0.924 1.011 1.383 sum -0.202 1.439 1.633 2.186 Atomic orbital electron populations 1.21824 0.90600 1.04258 1.03816 1.23250 0.96979 0.79389 1.02395 1.86511 1.24151 1.33415 1.83436 1.24225 0.80623 0.93195 0.71079 1.90675 1.61163 1.44433 1.46672 1.21291 0.96470 0.88659 1.03234 0.83466 1.21463 0.91806 0.97444 1.04028 1.22171 1.03146 0.94660 0.96215 1.20795 0.95032 0.87851 0.85569 1.92947 1.91340 1.81675 1.53070 1.31528 1.15828 1.08991 1.23934 1.05955 0.75277 0.73734 0.77370 1.93633 1.80741 1.79446 1.42252 1.93649 1.30186 1.82412 1.87217 1.85720 1.31017 1.57704 1.86568 1.17736 0.78416 1.08451 0.92982 1.20142 0.95889 0.94622 0.92982 1.25392 0.99005 0.88698 1.10004 1.86434 1.58324 1.28928 1.62739 0.93541 0.82787 0.78788 0.76864 1.21224 0.90405 1.00213 1.01602 1.21530 1.02493 0.91288 0.90348 1.19872 0.92727 1.09272 0.95201 1.17924 0.81049 0.74520 0.80027 1.93210 1.44213 1.95971 1.81794 1.93265 1.96302 1.64122 1.61690 1.93256 1.95424 1.39869 1.86696 1.21344 0.90346 0.96623 1.01462 1.22811 0.91935 0.99360 1.07322 1.21471 1.02930 0.93990 0.96292 0.88627 0.91020 0.91307 0.91747 0.91271 0.92401 0.89378 0.88327 0.85443 0.77628 0.81421 0.90341 0.74191 1.17820 1.20429 0.82234 0.80082 0.79477 0.84638 0.90483 0.92047 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 10.29 71.98 0.74 1.22 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.29 10.12 -51.42 -0.52 -1.81 16 4 C 0.46 2.21 7.25 71.23 0.52 2.72 16 5 O -0.54 -6.19 15.73 21.97 0.35 -5.84 16 6 C -0.08 0.17 2.63 -11.54 -0.03 0.13 16 7 H 0.15 -1.26 8.14 -2.39 -0.02 -1.28 16 8 C -0.11 0.18 4.37 30.59 0.13 0.32 16 9 C -0.12 0.85 5.00 30.59 0.15 1.00 16 10 C 0.13 -0.30 0.89 -10.79 -0.01 -0.31 16 11 F -0.21 -1.08 15.33 44.97 0.69 -0.39 16 12 C -0.67 3.92 4.79 71.98 0.34 4.26 16 13 S 2.58 9.74 4.17 -56.49 -0.24 9.51 16 14 O -0.96 -8.56 13.94 -118.57 -1.65 -10.22 16 15 O -0.94 -7.46 15.64 -118.57 -1.85 -9.31 16 16 O -0.65 -2.72 9.47 -61.51 -0.58 -3.30 16 17 C 0.07 0.24 4.78 22.50 0.11 0.35 16 18 C -0.03 -0.17 4.71 -19.77 -0.09 -0.26 16 19 C -0.12 -0.45 2.23 71.24 0.16 -0.30 16 20 O -0.55 -1.33 12.86 -148.98 -1.92 -3.25 16 21 Si 0.78 -1.24 30.20 68.60 2.07 0.83 16 22 C -0.12 -0.11 8.66 22.25 0.19 0.08 16 23 C -0.04 0.09 9.43 22.28 0.21 0.30 16 24 C -0.17 0.28 5.37 -19.88 -0.11 0.18 16 25 C 0.52 -0.89 3.32 71.24 0.24 -0.66 16 26 F -0.17 0.17 15.97 44.97 0.72 0.89 16 27 F -0.17 0.07 17.23 44.97 0.77 0.84 16 28 F -0.17 0.24 17.24 44.97 0.78 1.01 16 29 C -0.08 0.14 8.01 22.36 0.18 0.32 16 30 C -0.18 0.42 4.32 30.61 0.13 0.56 16 31 C -0.11 0.14 5.02 30.61 0.15 0.29 16 32 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 36 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 37 H 0.06 0.22 7.76 -2.39 -0.02 0.20 16 38 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 39 H 0.10 -0.79 8.14 -2.39 -0.02 -0.80 16 40 H 0.13 -1.74 8.14 -2.39 -0.02 -1.76 16 41 H 0.21 -3.10 8.14 -2.39 -0.02 -3.12 16 42 H 0.17 -1.56 6.62 -2.39 -0.02 -1.57 16 43 H 0.08 0.41 5.43 -2.39 -0.01 0.40 16 44 H 0.41 -3.20 8.74 -74.06 -0.65 -3.85 16 45 H -0.25 0.05 6.75 99.48 0.67 0.72 16 46 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 47 H 0.16 -0.30 4.90 -2.91 -0.01 -0.31 16 48 H 0.18 -1.37 7.15 -2.91 -0.02 -1.39 16 49 H 0.19 -1.78 7.52 -2.91 -0.02 -1.80 16 50 H 0.14 -1.21 8.14 -2.38 -0.02 -1.22 16 51 H 0.08 0.11 5.40 -2.39 -0.01 0.10 16 52 H 0.06 0.16 7.81 -2.38 -0.02 0.14 16 53 H 0.10 -0.31 8.11 -2.39 -0.02 -0.33 16 Total: 0.00 -30.11 447.95 2.44 -27.67 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: 0.36 Total: -17.36 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 3.46 Total: 10.73 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -6.18 Total: -33.73 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 2.96 Total: 2.36 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.07 Total: 0.83 kcal Atomic # 16 Polarization: 9.74 SS G_CDS: -0.24 Total: 9.51 kcal Total: -30.11 2.44 -27.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15244782_16464698.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -351.163 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -381.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -378.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds