Wall clock time and date at job start Mon Mar 8 2021 11:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45203 * 109.47272 * 2 1 4 4 C 1.34222 * 117.00181 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00572 * 0.02562 * 4 3 2 6 6 C 1.50710 * 119.99955 * 179.97438 * 4 3 2 7 7 H 1.09000 * 112.85158 * 311.19860 * 6 4 3 8 8 C 1.53953 * 113.66476 * 82.44227 * 6 4 3 9 9 C 1.53780 * 87.01976 * 139.93074 * 8 6 4 10 10 F 1.39905 * 113.61071 * 89.23111 * 9 8 6 11 11 C 1.53000 * 113.61945 * 220.04587 * 9 8 6 12 12 S 1.81399 * 109.47189 * 284.14172 * 11 9 8 13 13 O 1.42094 * 110.54417 * 68.37191 * 12 11 9 14 14 O 1.42095 * 110.54203 * 291.62033 * 12 11 9 15 15 O 1.52195 * 104.45077 * 179.97438 * 12 11 9 16 16 C 1.35901 * 114.00034 * 74.99528 * 15 12 11 17 17 C 1.38708 * 120.05359 * 90.00522 * 16 15 12 18 18 C 1.50694 * 120.03038 * 359.97438 * 17 16 15 19 19 O 1.42901 * 109.47118 * 74.72445 * 18 17 16 20 20 Si 1.86298 * 109.47775 * 194.72690 * 18 17 16 21 21 C 1.38171 * 119.94570 * 179.72675 * 17 16 15 22 22 C 1.38247 * 120.05134 * 0.27181 * 21 17 16 23 23 C 1.38284 * 120.11369 * 359.97438 * 22 21 17 24 24 C 1.50701 * 119.97345 * 180.02562 * 23 22 21 25 25 F 1.39909 * 109.46772 * 359.97438 * 24 23 22 26 26 F 1.39896 * 109.47485 * 120.00037 * 24 23 22 27 27 F 1.39902 * 109.46989 * 240.00054 * 24 23 22 28 28 C 1.38127 * 120.05792 * 0.02562 * 23 22 21 29 29 C 1.53778 * 87.17427 * 334.64025 * 9 8 6 30 30 H 1.09007 * 109.47302 * 60.00216 * 1 2 3 31 31 H 1.09000 * 109.46938 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47315 * 300.00121 * 1 2 3 33 33 H 1.08999 * 109.47381 * 240.00266 * 2 1 3 34 34 H 1.09007 * 109.47302 * 119.99783 * 2 1 3 35 35 H 1.09002 * 113.61567 * 25.41552 * 8 6 4 36 36 H 1.08999 * 113.67178 * 254.46080 * 8 6 4 37 37 H 1.08994 * 109.47226 * 164.13604 * 11 9 8 38 38 H 1.09005 * 109.46795 * 44.13515 * 11 9 8 39 39 H 1.09004 * 109.47407 * 314.72802 * 18 17 16 40 40 H 0.96708 * 114.00246 * 180.02562 * 19 18 17 41 41 H 1.48506 * 109.99834 * 300.00486 * 20 18 17 42 42 H 1.48502 * 110.00011 * 61.31751 * 20 18 17 43 43 H 1.08002 * 119.97374 * 180.25089 * 21 17 16 44 44 H 1.08005 * 119.93941 * 180.02562 * 22 21 17 45 45 H 1.07993 * 120.03118 * 179.97438 * 28 23 22 46 46 H 1.09000 * 113.61649 * 139.93861 * 29 9 8 47 47 H 1.08997 * 113.61354 * 270.84241 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.4714 3.5811 -0.7564 8 6 3.9848 3.5803 1.3975 9 6 5.3559 4.1431 0.9876 10 9 5.2848 5.3938 0.3646 11 6 6.3976 4.0955 2.1072 12 16 6.0573 5.4136 3.3061 13 8 4.8526 5.1476 4.0111 14 8 6.3018 6.6885 2.7283 15 8 7.1478 5.2619 4.3570 16 6 8.3683 5.7042 3.9549 17 6 8.7356 7.0238 4.1736 18 6 7.7813 7.9690 4.8569 19 8 7.7403 7.6762 6.2550 20 14 8.3578 9.7227 4.6063 21 6 9.9792 7.4697 3.7689 22 6 10.8549 6.6032 3.1416 23 6 10.4891 5.2886 2.9179 24 6 11.4464 4.3466 2.2342 25 9 12.6285 5.0275 1.9234 26 9 11.7351 3.2753 3.0863 27 9 10.8643 3.8628 1.0577 28 6 9.2471 4.8379 3.3205 29 6 5.4581 2.9682 0.0007 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0356 2.8551 2.2097 36 1 3.2287 4.3482 1.5611 37 1 7.3922 4.2369 1.6843 38 1 6.3495 3.1282 2.6073 39 1 6.7848 7.8498 4.4314 40 1 7.1443 8.2471 6.7591 41 1 9.7154 9.8982 5.1820 42 1 8.3743 10.0498 3.1578 43 1 10.2672 8.4960 3.9426 44 1 11.8267 6.9536 2.8264 45 1 8.9617 3.8112 3.1451 46 1 5.8898 3.2427 -0.9618 47 1 5.9125 2.0754 0.4303 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15244782_16464788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:38 Heat of formation + Delta-G solvation = -340.175939 kcal Electronic energy + Delta-G solvation = -44280.923016 eV Core-core repulsion = 37832.249177 eV Total energy + Delta-G solvation = -6448.673839 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.088 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -51.36260 -49.26098 -48.87408 -48.81840 -42.81090 -41.90131 -39.90466 -39.40730 -38.65333 -37.94233 -37.60247 -37.51117 -34.06041 -32.87961 -32.31075 -31.88503 -28.86718 -27.37390 -27.02874 -25.67881 -25.15758 -23.97530 -23.36563 -22.46999 -21.76972 -20.92838 -20.26281 -19.79408 -19.68792 -19.48427 -19.18516 -18.75904 -18.57364 -18.34326 -17.87972 -17.69424 -17.44293 -17.41266 -17.13834 -16.53591 -16.37162 -16.24196 -16.04696 -15.72874 -15.60366 -15.47089 -15.36769 -15.23842 -14.99067 -14.95536 -14.80615 -14.73877 -14.70002 -14.59804 -14.40298 -14.30948 -14.04884 -13.81379 -13.74727 -13.71248 -13.63167 -13.52390 -13.37975 -13.22297 -13.15938 -13.01785 -12.99044 -12.58305 -12.51883 -12.32304 -12.03702 -11.96253 -11.60729 -11.57730 -11.49393 -10.78415 -10.55513 -10.46724 -5.01939 -1.50262 -0.75916 -0.48207 0.59800 0.93974 1.12681 1.32950 1.51175 1.58126 1.69584 1.83712 2.11905 2.39260 2.46627 2.54895 2.66043 2.71200 2.82258 2.98947 3.06899 3.10812 3.15127 3.16638 3.40804 3.43074 3.56029 3.65440 3.75613 3.76489 3.92936 3.94520 4.00544 4.01268 4.12032 4.23064 4.27804 4.29698 4.35999 4.36698 4.45113 4.54228 4.56569 4.63063 4.68458 4.78944 4.87103 4.96058 5.07297 5.09942 5.36889 6.55203 6.68473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.476 3.524 5 O -0.529 6.529 6 C -0.107 4.107 7 H 0.153 0.847 8 C -0.155 4.155 9 C 0.095 3.905 10 F -0.182 7.182 11 C -0.665 4.665 12 S 2.581 3.419 13 O -0.938 6.938 14 O -0.955 6.955 15 O -0.651 6.651 16 C 0.065 3.935 17 C -0.033 4.033 18 C -0.126 4.126 19 O -0.555 6.555 20 Si 0.782 3.218 21 C -0.115 4.115 22 C -0.037 4.037 23 C -0.168 4.168 24 C 0.518 3.482 25 F -0.170 7.170 26 F -0.174 7.174 27 F -0.172 7.172 28 C -0.080 4.080 29 C -0.114 4.114 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.174 0.826 38 H 0.197 0.803 39 H 0.079 0.921 40 H 0.406 0.594 41 H -0.254 1.254 42 H -0.276 1.276 43 H 0.162 0.838 44 H 0.183 0.817 45 H 0.185 0.815 46 H 0.113 0.887 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 1.668 -0.314 1.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.320 3.680 5 O -0.419 6.419 6 C -0.126 4.126 7 H 0.170 0.830 8 C -0.193 4.193 9 C 0.076 3.924 10 F -0.162 7.162 11 C -0.793 4.793 12 S 2.679 3.321 13 O -0.936 6.936 14 O -0.954 6.954 15 O -0.610 6.610 16 C 0.023 3.977 17 C -0.035 4.035 18 C -0.233 4.233 19 O -0.365 6.365 20 Si 0.682 3.318 21 C -0.132 4.132 22 C -0.055 4.055 23 C -0.170 4.170 24 C 0.464 3.536 25 F -0.151 7.151 26 F -0.155 7.155 27 F -0.153 7.153 28 C -0.100 4.100 29 C -0.153 4.153 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.192 0.808 38 H 0.214 0.786 39 H 0.097 0.903 40 H 0.258 0.742 41 H -0.179 1.179 42 H -0.201 1.201 43 H 0.179 0.821 44 H 0.200 0.800 45 H 0.202 0.798 46 H 0.131 0.869 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.322 1.876 -0.334 1.932 hybrid contribution -0.101 -1.543 -0.587 1.654 sum 0.222 0.333 -0.921 1.004 Atomic orbital electron populations 1.21838 0.90840 1.04305 1.03732 1.23301 0.96873 0.79083 1.02763 1.86528 1.24082 1.33781 1.83244 1.23610 0.80728 0.92311 0.71332 1.90676 1.61000 1.43754 1.46435 1.22609 0.97642 0.90974 1.01375 0.82978 1.23988 0.95934 1.02289 0.97051 1.21324 0.95682 0.82071 0.93371 1.92992 1.97077 1.42411 1.83737 1.31345 1.10838 1.23290 1.13808 1.05836 0.74342 0.76844 0.75072 1.93646 1.43182 1.86463 1.70345 1.93630 1.83644 1.38787 1.79319 1.85745 1.29145 1.84573 1.61523 1.17744 0.83592 0.92852 1.03475 1.20146 0.95496 0.92696 0.95174 1.25434 1.01665 1.10913 0.85274 1.86437 1.70212 1.63709 1.16160 0.93492 0.81632 0.75571 0.81111 1.21237 0.91588 1.01689 0.98736 1.21537 1.01156 0.90560 0.92240 1.19860 0.95244 0.95760 1.06119 1.17945 0.79509 0.79286 0.76848 1.93213 1.49194 1.79482 1.93210 1.93264 1.93919 1.57843 1.70468 1.93259 1.84008 1.88862 1.49150 1.21338 0.92037 1.01526 0.95067 1.23612 0.93398 0.97184 1.01077 0.91296 0.88472 0.91297 0.91114 0.91050 0.85506 0.86956 0.80823 0.78564 0.90275 0.74185 1.17924 1.20147 0.82082 0.79968 0.79798 0.86856 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.01 6.19 71.98 0.45 0.45 16 3 O -0.36 -1.01 10.22 -51.34 -0.52 -1.53 16 4 C 0.48 1.30 7.49 71.24 0.53 1.83 16 5 O -0.53 -4.01 15.65 21.96 0.34 -3.67 16 6 C -0.11 0.25 4.24 -10.95 -0.05 0.21 16 7 H 0.15 -0.83 8.14 -2.39 -0.02 -0.84 16 8 C -0.16 0.35 6.76 31.18 0.21 0.56 16 9 C 0.10 -0.18 1.56 -10.27 -0.02 -0.19 16 10 F -0.18 -0.50 16.58 44.97 0.75 0.25 16 11 C -0.66 2.91 5.10 71.98 0.37 3.28 16 12 S 2.58 11.21 4.67 -56.49 -0.26 10.95 16 13 O -0.94 -8.87 17.84 -118.57 -2.11 -10.98 16 14 O -0.96 -7.86 13.83 -118.57 -1.64 -9.50 16 15 O -0.65 -3.14 9.48 -61.53 -0.58 -3.72 16 16 C 0.07 0.25 4.79 22.51 0.11 0.36 16 17 C -0.03 -0.15 4.71 -19.77 -0.09 -0.25 16 18 C -0.13 -0.42 2.22 71.23 0.16 -0.26 16 19 O -0.55 -1.31 12.86 -148.98 -1.92 -3.23 16 20 Si 0.78 -1.76 30.20 68.60 2.07 0.31 16 21 C -0.12 -0.05 8.66 22.26 0.19 0.14 16 22 C -0.04 0.10 9.43 22.28 0.21 0.31 16 23 C -0.17 0.27 5.37 -19.88 -0.11 0.16 16 24 C 0.52 -0.71 3.32 71.24 0.24 -0.47 16 25 F -0.17 0.16 15.97 44.97 0.72 0.88 16 26 F -0.17 -0.07 17.24 44.97 0.78 0.71 16 27 F -0.17 0.16 17.24 44.97 0.78 0.94 16 28 C -0.08 0.11 8.01 22.37 0.18 0.29 16 29 C -0.11 0.47 6.86 31.12 0.21 0.68 16 30 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 31 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 34 H 0.07 0.01 8.13 -2.38 -0.02 -0.01 16 35 H 0.13 -0.55 8.01 -2.39 -0.02 -0.56 16 36 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.17 -1.54 6.58 -2.39 -0.02 -1.55 16 38 H 0.20 -2.23 8.09 -2.39 -0.02 -2.25 16 39 H 0.08 0.38 5.43 -2.38 -0.01 0.37 16 40 H 0.41 -3.22 8.74 -74.05 -0.65 -3.87 16 41 H -0.25 0.18 6.75 99.48 0.67 0.85 16 42 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 43 H 0.16 -0.41 4.90 -2.91 -0.01 -0.42 16 44 H 0.18 -1.47 7.15 -2.91 -0.02 -1.49 16 45 H 0.18 -1.54 7.47 -2.91 -0.02 -1.56 16 46 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 47 H 0.13 -0.65 7.39 -2.39 -0.02 -0.67 16 Total: 0.00 -26.69 419.49 2.15 -24.54 By element: Atomic # 1 Polarization: -14.77 SS G_CDS: 0.43 Total: -14.33 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 3.33 Total: 8.39 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -6.43 Total: -32.63 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 3.01 Total: 2.77 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: 2.07 Total: 0.31 kcal Atomic # 16 Polarization: 11.21 SS G_CDS: -0.26 Total: 10.95 kcal Total: -26.69 2.15 -24.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15244782_16464788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -315.635 kcal (2) G-P(sol) polarization free energy of solvation -26.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -342.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -340.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds