Wall clock time and date at job start Mon Mar 8 2021 11:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86297 * 109.47140 * 2 1 4 4 H 1.48499 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47322 * 300.00448 * 3 2 1 6 6 H 1.48510 * 109.46909 * 60.00261 * 3 2 1 7 7 C 1.50697 * 109.47009 * 120.00279 * 2 1 3 8 8 C 1.38118 * 120.02887 * 255.13146 * 7 2 1 9 9 C 1.38286 * 120.05951 * 180.02562 * 8 7 2 10 10 C 1.38244 * 120.11165 * 359.97418 * 9 8 7 11 11 C 1.50697 * 119.97407 * 180.02562 * 10 9 8 12 12 F 1.39897 * 109.47337 * 0.02562 * 11 10 9 13 13 F 1.39908 * 109.46638 * 120.00270 * 11 10 9 14 14 F 1.39898 * 109.47628 * 239.99967 * 11 10 9 15 15 C 1.38173 * 120.05284 * 0.02562 * 10 9 8 16 16 C 1.38706 * 119.94436 * 359.73898 * 15 10 9 17 17 O 1.35900 * 120.05994 * 180.02562 * 16 15 10 18 18 S 1.52202 * 113.99992 * 275.41504 * 17 16 15 19 19 O 1.42099 * 106.39986 * 188.54297 * 18 17 16 20 20 O 1.42097 * 106.40091 * 321.46751 * 18 17 16 21 21 C 1.76201 * 107.21879 * 75.00733 * 18 17 16 22 22 C 1.38240 * 120.00042 * 262.65000 * 21 18 17 23 23 C 1.38229 * 120.00146 * 179.97438 * 22 21 18 24 24 C 1.38244 * 120.00031 * 359.97438 * 23 22 21 25 Xx 1.80997 * 119.99808 * 179.97438 * 24 23 22 26 25 F 9.78933 * 133.46771 * 252.20462 * 7 1 2 27 26 F 1.61002 * 89.99894 * 135.00089 * 25 24 23 28 27 F 1.61000 * 90.00208 * 314.99764 * 25 24 23 29 28 F 1.61003 * 89.99800 * 224.99987 * 25 24 23 30 29 F 1.60994 * 90.00302 * 45.00090 * 25 24 23 31 30 C 1.38234 * 120.00021 * 359.95601 * 24 23 22 32 31 C 1.38236 * 119.99660 * 359.85715 * 31 24 23 33 32 H 0.96703 * 114.00068 * 55.08793 * 1 2 3 34 33 H 1.09001 * 109.46880 * 239.99856 * 2 1 3 35 34 H 1.08003 * 119.96957 * 0.02562 * 8 7 2 36 35 H 1.07997 * 119.94740 * 179.97438 * 9 8 7 37 36 H 1.07998 * 120.02582 * 179.97438 * 15 10 9 38 37 H 1.08003 * 119.99775 * 359.97438 * 22 21 18 39 38 H 1.08003 * 120.00019 * 179.97438 * 23 22 21 40 39 H 1.07990 * 120.00208 * 180.02562 * 31 24 23 41 40 H 1.07999 * 119.99941 * 180.02562 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7564 -0.0006 5 1 1.5550 2.4565 -1.2124 6 1 1.5550 2.4564 1.2126 7 6 1.9313 -0.7105 1.2304 8 6 2.4510 0.0157 2.2841 9 6 2.9126 -0.6356 3.4133 10 6 2.8548 -2.0147 3.4908 11 6 3.3581 -2.7212 4.7230 12 9 3.8312 -1.7777 5.6412 13 9 2.3140 -3.4512 5.3012 14 9 4.3959 -3.5909 4.3709 15 6 2.3358 -2.7457 2.4394 16 6 1.8677 -2.0944 1.3078 17 8 1.3563 -2.8111 0.2725 18 16 2.4060 -3.3286 -0.7005 19 8 1.6962 -3.8693 -1.8063 20 8 3.3769 -2.2989 -0.8283 21 6 3.2178 -4.6837 0.0802 22 6 4.4234 -4.4873 0.7276 23 6 5.0600 -5.5502 1.3405 24 6 4.4908 -6.8096 1.3065 25 9 6.0694 -9.4389 2.8184 26 9 3.9252 -8.6686 2.7530 27 9 6.7242 -7.7344 1.4640 28 9 5.0361 -9.1185 0.8170 29 9 5.6134 -7.2845 3.3999 30 6 3.2846 -7.0057 0.6605 31 6 2.6461 -5.9419 0.0509 32 1 -0.3933 0.5056 -0.7244 33 1 1.7923 -0.5139 -0.8900 34 1 2.4969 1.0932 2.2261 35 1 3.3190 -0.0661 4.2359 36 1 2.2912 -3.8230 2.5003 37 1 4.8679 -3.5033 0.7544 38 1 6.0021 -5.3968 1.8459 39 1 2.8397 -7.9894 0.6343 40 1 1.7035 -6.0950 -0.4536 RHF calculation, no. of doubly occupied orbitals= 79 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15244782_8643202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:32 Heat of formation + Delta-G solvation = 164.090392 kcal Electronic energy + Delta-G solvation = -46798.229767 eV Core-core repulsion = 39428.390537 eV Total energy + Delta-G solvation = -7369.839230 eV No. of doubly occupied orbitals = 79 Molecular weight (most abundant/longest-lived isotopes) = 456.028 amu Computer time = 47.95 seconds Orbital eigenvalues (eV) -51.28300 -48.79746 -48.75280 -44.49228 -44.33897 -44.29581 -44.19262 -43.68485 -42.77735 -41.38265 -39.84758 -38.86270 -37.87301 -37.50885 -33.97159 -33.31758 -33.14371 -32.00284 -28.79976 -25.65805 -25.20408 -24.93220 -24.67469 -23.23495 -21.94236 -20.72100 -19.85304 -19.64315 -19.58766 -19.15311 -18.62347 -18.28304 -17.83657 -17.51727 -17.34194 -16.72869 -16.59785 -16.23457 -16.11145 -15.68997 -15.66844 -15.59736 -15.54039 -15.40947 -15.22408 -15.16461 -14.93081 -14.88805 -14.85566 -14.78863 -14.70848 -14.65954 -14.49765 -14.44722 -14.30585 -14.25535 -14.21479 -14.12886 -14.01016 -13.82521 -13.75493 -13.71300 -13.68598 -13.59618 -13.32042 -13.29586 -13.12633 -12.83564 -12.41886 -12.24679 -12.06652 -12.04845 -11.79825 -11.63761 -11.49832 -11.17566 -10.63798 -10.49949 -10.44675 -5.36607 -4.89616 -3.52586 -1.68341 -1.37589 -0.85143 -0.63963 -0.34711 0.72400 1.02889 1.26119 1.44461 1.46723 1.55879 1.79870 1.91614 2.03561 2.31161 2.48046 2.49398 2.60230 2.78569 2.99255 3.10973 3.14567 3.22888 3.25148 3.53580 3.58262 3.61639 3.68292 3.78574 3.81858 3.86982 4.05085 4.11188 4.17517 4.26579 4.43800 4.53522 4.56877 4.70662 4.77211 5.19281 6.67642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.118 4.118 3 Si 0.968 3.032 4 H -0.238 1.238 5 H -0.250 1.250 6 H -0.235 1.235 7 C -0.027 4.027 8 C -0.103 4.103 9 C -0.030 4.030 10 C -0.164 4.164 11 C 0.510 3.490 12 F -0.171 7.171 13 F -0.179 7.179 14 F -0.175 7.175 15 C -0.083 4.083 16 C 0.069 3.931 17 O -0.636 6.636 18 S 2.687 3.313 19 O -0.924 6.924 20 O -0.936 6.936 21 C -0.704 4.704 22 C 0.052 3.948 23 C -0.125 4.125 24 C 0.388 3.612 25 F -0.202 7.202 26 F -0.159 7.159 27 F -0.163 7.163 28 F -0.164 7.164 29 F -0.152 7.152 30 C -0.125 4.125 31 C 0.064 3.936 32 H 0.403 0.597 33 H 0.081 0.919 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.226 0.774 38 H 0.204 0.796 39 H 0.206 0.794 40 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 13.411 -3.711 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.226 4.226 3 Si 0.786 3.214 4 H -0.161 1.161 5 H -0.173 1.173 6 H -0.158 1.158 7 C -0.029 4.029 8 C -0.121 4.121 9 C -0.048 4.048 10 C -0.166 4.166 11 C 0.456 3.544 12 F -0.152 7.152 13 F -0.160 7.160 14 F -0.156 7.156 15 C -0.103 4.103 16 C 0.028 3.972 17 O -0.595 6.595 18 S 2.776 3.224 19 O -0.922 6.922 20 O -0.935 6.935 21 C -0.785 4.785 22 C 0.034 3.966 23 C -0.143 4.143 24 C 0.383 3.617 25 F -0.201 7.201 26 F -0.157 7.157 27 F -0.161 7.161 28 F -0.163 7.163 29 F -0.151 7.151 30 C -0.143 4.143 31 C 0.046 3.954 32 H 0.254 0.746 33 H 0.099 0.901 34 H 0.190 0.810 35 H 0.199 0.801 36 H 0.189 0.811 37 H 0.242 0.758 38 H 0.220 0.780 39 H 0.223 0.777 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.931 14.246 -3.696 15.522 hybrid contribution 0.766 -2.733 0.630 2.908 sum -4.164 11.513 -3.066 12.621 Atomic orbital electron populations 1.86479 1.15827 1.77702 1.56030 1.25135 0.87126 1.13541 0.96839 0.85427 0.81372 0.72296 0.82277 1.16087 1.17325 1.15775 1.19951 0.94868 0.91723 0.96396 1.21403 0.97244 1.02245 0.91195 1.21559 0.92631 0.91950 0.98691 1.19771 1.07077 0.95638 0.94074 1.18195 0.75529 0.77077 0.83589 1.93213 1.88761 1.64399 1.68812 1.93264 1.58026 1.78625 1.86135 1.93252 1.59567 1.70919 1.91844 1.21211 0.95635 1.02721 0.90705 1.17591 1.03124 0.89557 0.86952 1.85787 1.56503 1.70860 1.46337 1.02660 0.72733 0.73574 0.73469 1.93705 1.71812 1.79765 1.46913 1.93674 1.62138 1.52976 1.84678 1.31992 1.10217 1.18577 1.17697 1.21737 0.89745 0.98328 0.86757 1.22205 1.05580 0.84521 1.02009 1.28044 0.85137 0.58710 0.89829 2.00000 1.59105 1.66517 1.94526 1.99921 1.31019 1.87499 1.97277 1.99920 1.57189 1.59401 1.99617 1.99920 1.63146 1.80716 1.72512 1.99921 1.81935 1.47038 1.86175 1.22258 0.90439 1.05249 0.96355 1.21680 0.99182 0.85023 0.89503 0.74551 0.90080 0.80976 0.80080 0.81150 0.75765 0.77970 0.77747 0.75615 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 630. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.18 12.93 -148.98 -1.93 1.25 16 2 C -0.12 0.76 2.34 71.24 0.17 0.93 16 3 Si 0.97 -8.65 25.42 68.60 1.74 -6.91 16 4 H -0.24 2.00 7.11 99.48 0.71 2.71 16 5 H -0.25 1.96 7.11 99.48 0.71 2.67 16 6 H -0.23 2.28 6.73 99.48 0.67 2.95 16 7 C -0.03 0.16 4.86 -19.77 -0.10 0.07 16 8 C -0.10 1.02 8.66 22.25 0.19 1.22 16 9 C -0.03 0.33 9.43 22.28 0.21 0.54 16 10 C -0.16 1.40 5.37 -19.88 -0.11 1.29 16 11 C 0.51 -2.67 3.32 71.23 0.24 -2.43 16 12 F -0.17 0.76 15.97 44.97 0.72 1.48 16 13 F -0.18 0.31 17.24 44.97 0.78 1.09 16 14 F -0.17 0.77 17.24 44.97 0.78 1.54 16 15 C -0.08 0.76 8.04 22.37 0.18 0.94 16 16 C 0.07 -0.45 4.71 22.51 0.11 -0.34 16 17 O -0.64 4.07 9.52 -61.71 -0.59 3.48 16 18 S 2.69 -19.46 5.16 -56.49 -0.29 -19.75 16 19 O -0.92 1.67 17.49 -118.78 -2.08 -0.41 16 20 O -0.94 5.54 14.39 -118.78 -1.71 3.83 16 21 C -0.70 8.51 4.73 22.27 0.11 8.62 16 22 C 0.05 -0.70 8.61 22.27 0.19 -0.51 16 23 C -0.13 1.10 8.62 22.27 0.19 1.29 16 24 C 0.39 -1.04 4.82 22.27 0.11 -0.94 16 25 F -0.20 -4.79 16.65 44.97 0.75 -4.04 16 26 F -0.16 -2.00 15.32 44.97 0.69 -1.31 16 27 F -0.16 -2.14 15.30 44.97 0.69 -1.45 16 28 F -0.16 -2.17 15.31 44.97 0.69 -1.48 16 29 F -0.15 -1.93 15.31 44.97 0.69 -1.24 16 30 C -0.13 1.15 8.62 22.27 0.19 1.35 16 31 C 0.06 -0.89 9.52 22.27 0.21 -0.67 16 32 H 0.40 -5.69 8.62 -74.06 -0.64 -6.33 16 33 H 0.08 -0.59 6.26 -2.39 -0.01 -0.61 16 34 H 0.17 -2.38 4.89 -2.91 -0.01 -2.40 16 35 H 0.18 -2.80 7.15 -2.91 -0.02 -2.82 16 36 H 0.17 -2.35 7.42 -2.91 -0.02 -2.37 16 37 H 0.23 -4.35 7.47 -2.91 -0.02 -4.37 16 38 H 0.20 -2.06 7.40 -2.91 -0.02 -2.08 16 39 H 0.21 -2.24 7.40 -2.92 -0.02 -2.26 16 40 H 0.23 -4.54 7.80 -2.91 -0.02 -4.57 16 Total: 0.00 -36.16 390.24 4.10 -32.06 By element: Atomic # 1 Polarization: -20.76 SS G_CDS: 1.29 Total: -19.48 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 1.89 Total: 11.35 kcal Atomic # 8 Polarization: 14.46 SS G_CDS: -6.30 Total: 8.16 kcal Atomic # 9 Polarization: -11.20 SS G_CDS: 5.77 Total: -5.42 kcal Atomic # 14 Polarization: -8.65 SS G_CDS: 1.74 Total: -6.91 kcal Atomic # 16 Polarization: -19.46 SS G_CDS: -0.29 Total: -19.75 kcal Total: -36.16 4.10 -32.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15244782_8643202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.152 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 47.95 seconds