Wall clock time and date at job start Mon Mar 8 2021 14:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86301 * 109.46944 * 2 1 4 4 C 1.50704 * 109.47065 * 119.99743 * 2 1 3 5 5 C 1.38236 * 119.99934 * 65.00415 * 4 2 1 6 6 C 1.38227 * 120.00252 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99840 * 359.97438 * 6 5 4 8 8 S 1.76202 * 120.00124 * 180.02562 * 7 6 5 9 9 O 1.42099 * 106.40180 * 336.46163 * 8 7 6 10 10 O 1.42097 * 106.40288 * 203.53695 * 8 7 6 11 11 N 1.65600 * 107.21522 * 90.00058 * 8 7 6 12 12 C 1.46503 * 120.00202 * 65.00085 * 11 8 7 13 13 H 1.09000 * 112.84702 * 13.80206 * 12 11 8 14 14 C 1.53784 * 113.61416 * 145.00075 * 12 11 8 15 15 C 1.53779 * 87.08121 * 89.11740 * 14 12 11 16 16 H 1.08997 * 113.61498 * 270.79586 * 15 14 12 17 17 N 1.46503 * 113.60961 * 139.97951 * 15 14 12 18 18 C 1.34940 * 126.03757 * 276.52077 * 17 15 14 19 19 C 1.35317 * 107.74438 * 179.77616 * 18 17 15 20 20 C 1.39872 * 107.92021 * 0.23195 * 19 18 17 21 21 N 1.30838 * 108.20312 * 359.97438 * 20 19 18 22 22 C 1.53780 * 87.17452 * 25.39071 * 15 14 12 23 23 C 1.38239 * 120.00105 * 0.27549 * 7 6 5 24 24 C 1.38235 * 120.00051 * 244.98199 * 4 2 1 25 25 H 0.96702 * 113.99873 * 299.99798 * 1 2 3 26 26 H 1.08993 * 109.47208 * 240.00161 * 2 1 3 27 27 H 1.48504 * 109.99926 * 178.67850 * 3 2 1 28 28 H 1.48492 * 110.00117 * 299.99928 * 3 2 1 29 29 H 1.07999 * 119.99886 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.00352 * 180.02562 * 6 5 4 31 31 H 0.97009 * 119.99980 * 245.00254 * 11 8 7 32 32 H 1.08999 * 113.61130 * 334.56173 * 14 12 11 33 33 H 1.09004 * 113.68973 * 203.68202 * 14 12 11 34 34 H 1.08002 * 126.13053 * 0.04913 * 18 17 15 35 35 H 1.08004 * 126.04102 * 180.24995 * 19 18 17 36 36 H 1.08001 * 125.89521 * 179.97438 * 20 19 18 37 37 H 1.08992 * 113.61446 * 89.15392 * 22 15 14 38 38 H 1.08996 * 113.61313 * 220.06105 * 22 15 14 39 39 H 1.07999 * 120.00179 * 179.72097 * 23 7 6 40 40 H 1.07992 * 120.00122 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6848 -2.0602 1.3984 6 6 2.1460 -2.7119 2.5268 7 6 2.8543 -2.0140 3.4871 8 16 3.4427 -2.8448 4.9252 9 8 2.6134 -3.9859 5.0970 10 8 3.6102 -1.8482 5.9242 11 7 4.9574 -3.4159 4.5760 12 6 6.0505 -2.4777 4.3089 13 1 5.8109 -1.4549 4.5998 14 6 7.4166 -2.9609 4.8237 15 6 7.6003 -3.6461 3.4593 16 1 7.2122 -4.6641 3.4262 17 7 8.9610 -3.5385 2.9271 18 6 9.4639 -2.4923 2.2390 19 6 10.7499 -2.7803 1.9322 20 6 11.0414 -4.0482 2.4460 21 7 9.9690 -4.5047 3.0405 22 6 6.6307 -2.5982 2.8879 23 6 3.0964 -0.6630 3.3218 24 6 2.6391 -0.0123 2.1911 25 1 -0.3933 0.4417 0.7651 26 1 1.7924 -0.5138 -0.8899 27 1 3.5346 1.7703 0.0322 28 1 1.5615 2.4679 -1.2084 29 1 1.1319 -2.6055 0.6480 30 1 1.9537 -3.7666 2.6578 31 1 5.1209 -4.3717 4.5482 32 1 7.3468 -3.6595 5.6575 33 1 8.1263 -2.1538 5.0061 34 1 8.9360 -1.5855 1.9831 35 1 11.4311 -2.1436 1.3871 36 1 11.9882 -4.5616 2.3659 37 1 7.1241 -1.6909 2.5395 38 1 5.9274 -3.0045 2.1611 39 1 3.6458 -0.1168 4.0742 40 1 2.8324 1.0420 2.0596 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15494198_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:11:17 Heat of formation + Delta-G solvation = 39.820012 kcal Electronic energy + Delta-G solvation = -26597.382818 eV Core-core repulsion = 22701.856923 eV Total energy + Delta-G solvation = -3895.525894 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = -3.38 seconds Orbital eigenvalues (eV) -42.27075 -40.67779 -40.12049 -38.43054 -37.70473 -37.06470 -34.51001 -33.00944 -32.18846 -31.73426 -30.93304 -27.24927 -26.89704 -25.89968 -24.07934 -22.99038 -22.43219 -21.99656 -20.92486 -20.23826 -19.40295 -18.80173 -18.22214 -18.07942 -17.35602 -16.82168 -16.56263 -16.22592 -16.04793 -15.79649 -15.64268 -15.47974 -15.19313 -14.76735 -14.52137 -14.47771 -14.22549 -14.04374 -13.80755 -13.71456 -13.58026 -13.38881 -13.32164 -13.24989 -12.65335 -12.58706 -12.42223 -12.17252 -12.00702 -11.88039 -11.77395 -11.48484 -10.67794 -10.60318 -10.36317 -10.33649 -10.13678 -9.50496 -5.01410 -0.79869 -0.37842 0.20462 0.96437 1.24338 1.60622 1.61071 1.81456 1.93919 1.95597 2.32448 2.67955 3.07295 3.18734 3.32086 3.41157 3.53182 3.55200 3.73081 3.81374 3.84255 3.94622 4.04962 4.09217 4.20851 4.33076 4.38711 4.39459 4.55905 4.58954 4.60858 4.76345 4.81442 4.85573 4.88772 4.94283 4.95500 4.99584 5.14953 5.19316 5.26646 5.70809 5.73997 5.89082 6.17192 6.67582 6.77558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.085 4.085 3 Si 0.774 3.226 4 C -0.064 4.064 5 C -0.124 4.124 6 C -0.027 4.027 7 C -0.675 4.675 8 S 2.714 3.286 9 O -0.988 6.988 10 O -0.976 6.976 11 N -1.092 6.092 12 C 0.132 3.868 13 H 0.137 0.863 14 C -0.148 4.148 15 C 0.122 3.878 16 H 0.118 0.882 17 N -0.367 5.367 18 C 0.055 3.945 19 C -0.291 4.291 20 C 0.030 3.970 21 N -0.345 5.345 22 C -0.149 4.149 23 C -0.018 4.018 24 C -0.136 4.136 25 H 0.397 0.603 26 H 0.113 0.887 27 H -0.272 1.272 28 H -0.302 1.302 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.428 0.572 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.207 0.793 35 H 0.163 0.837 36 H 0.196 0.804 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.165 0.835 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 5.766 -2.119 6.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.194 4.194 3 Si 0.679 3.321 4 C -0.064 4.064 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.763 4.763 8 S 2.806 3.194 9 O -0.978 6.978 10 O -0.966 6.966 11 N -0.852 5.852 12 C 0.023 3.977 13 H 0.155 0.845 14 C -0.188 4.188 15 C 0.021 3.979 16 H 0.136 0.864 17 N -0.149 5.149 18 C -0.091 4.091 19 C -0.320 4.320 20 C -0.155 4.155 21 N -0.167 5.167 22 C -0.189 4.189 23 C -0.037 4.037 24 C -0.154 4.154 25 H 0.247 0.753 26 H 0.131 0.869 27 H -0.199 1.199 28 H -0.231 1.231 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.265 0.735 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.223 0.777 35 H 0.180 0.820 36 H 0.212 0.788 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.182 0.818 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.312 5.118 -1.554 5.357 hybrid contribution 0.565 -0.620 -1.510 1.728 sum 0.878 4.497 -3.064 5.512 Atomic orbital electron populations 1.86509 1.16930 1.82182 1.50551 1.25386 0.85557 1.11391 0.97080 0.93691 0.78456 0.74681 0.85272 1.20843 0.94848 0.94730 0.96004 1.21301 1.00187 0.94557 0.98280 1.21100 0.91561 1.00508 0.91414 1.30761 1.16835 1.06928 1.21824 1.01101 0.72055 0.72630 0.73639 1.93584 1.66779 1.51364 1.86056 1.93585 1.85815 1.61433 1.55749 1.55199 1.24468 1.17278 1.88242 1.21617 0.86221 0.94253 0.95590 0.84495 1.23847 0.96606 1.01641 0.96717 1.23230 0.76791 1.01992 0.95906 0.86421 1.48939 1.10631 1.12695 1.42607 1.23051 0.95453 0.94641 0.95988 1.21887 0.97659 0.99475 1.13000 1.24339 0.98117 0.96144 0.96856 1.77320 0.98206 1.15367 1.25783 1.24056 0.97276 0.99657 0.97916 1.21210 0.94137 0.91627 0.96751 1.21396 0.99153 1.00939 0.93870 0.75309 0.86913 1.19850 1.23070 0.84474 0.83694 0.73483 0.89621 0.87348 0.77660 0.81980 0.78758 0.85659 0.88444 0.81753 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.55 12.83 -148.98 -1.91 -0.36 16 2 C -0.08 0.40 2.80 71.24 0.20 0.60 16 3 Si 0.77 -5.01 29.80 68.60 2.04 -2.96 16 4 C -0.06 0.29 5.35 -19.86 -0.11 0.18 16 5 C -0.12 0.31 9.69 22.27 0.22 0.53 16 6 C -0.03 0.06 9.52 22.27 0.21 0.27 16 7 C -0.67 2.06 5.95 22.27 0.13 2.19 16 8 S 2.71 -2.09 5.71 -56.49 -0.32 -2.41 16 9 O -0.99 -6.41 17.28 -128.00 -2.21 -8.62 16 10 O -0.98 -4.20 16.80 -128.00 -2.15 -6.35 16 11 N -1.09 7.47 5.73 -166.94 -0.96 6.51 16 12 C 0.13 -1.20 4.52 45.58 0.21 -1.00 16 13 H 0.14 -1.65 7.77 -2.39 -0.02 -1.67 16 14 C -0.15 0.94 7.67 31.12 0.24 1.18 16 15 C 0.12 -0.54 4.85 45.52 0.22 -0.32 16 16 H 0.12 -0.47 8.11 -2.39 -0.02 -0.49 16 17 N -0.37 -0.51 3.81 -324.99 -1.24 -1.75 16 18 C 0.05 -0.11 10.69 83.54 0.89 0.78 16 19 C -0.29 -0.17 10.80 21.99 0.24 0.06 16 20 C 0.03 0.13 12.03 85.24 1.03 1.15 16 21 N -0.35 -2.70 12.58 -57.02 -0.72 -3.42 16 22 C -0.15 1.53 7.25 31.18 0.23 1.76 16 23 C -0.02 0.11 9.52 22.27 0.21 0.32 16 24 C -0.14 0.95 8.67 22.27 0.19 1.14 16 25 H 0.40 -4.21 8.70 -74.06 -0.64 -4.86 16 26 H 0.11 -0.43 7.96 -2.39 -0.02 -0.45 16 27 H -0.27 0.93 7.11 99.48 0.71 1.63 16 28 H -0.30 -0.68 7.11 99.48 0.71 0.02 16 29 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 30 H 0.15 -0.48 7.62 -2.91 -0.02 -0.50 16 31 H 0.43 -3.90 8.79 -96.73 -0.85 -4.75 16 32 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.21 -2.13 6.69 -2.91 -0.02 -2.15 16 35 H 0.16 -0.56 8.06 -2.91 -0.02 -0.58 16 36 H 0.20 -0.14 8.06 -2.91 -0.02 -0.17 16 37 H 0.13 -1.75 6.32 -2.39 -0.02 -1.76 16 38 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 39 H 0.16 -1.65 7.61 -2.91 -0.02 -1.67 16 40 H 0.16 -1.96 4.91 -2.91 -0.01 -1.98 16 Total: 0.00 -28.89 351.12 -3.72 -32.60 By element: Atomic # 1 Polarization: -21.73 SS G_CDS: -0.36 Total: -22.08 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 4.11 Total: 8.84 kcal Atomic # 7 Polarization: 4.26 SS G_CDS: -2.91 Total: 1.35 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -6.27 Total: -15.33 kcal Atomic # 14 Polarization: -5.01 SS G_CDS: 2.04 Total: -2.96 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -0.32 Total: -2.41 kcal Total: -28.89 -3.72 -32.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15494198_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.423 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.38 seconds