Wall clock time and date at job start Mon Mar 8 2021 14:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33390 * 125.19896 * 2 1 4 4 C 1.50699 * 122.54174 * 0.02947 * 3 2 1 5 5 O 1.42901 * 109.47104 * 64.79423 * 4 3 2 6 6 Si 1.86295 * 109.47031 * 304.79052 * 4 3 2 7 7 C 1.38426 * 114.92010 * 179.75817 * 3 2 1 8 8 S 1.76201 * 122.54273 * 180.27244 * 7 3 2 9 9 O 1.42106 * 106.39878 * 29.27268 * 8 7 3 10 10 O 1.42094 * 106.40388 * 162.19206 * 8 7 3 11 11 N 1.65599 * 107.21685 * 275.73882 * 8 7 3 12 12 C 1.46493 * 120.00239 * 64.99388 * 11 8 7 13 13 H 1.09003 * 112.85174 * 346.20238 * 12 11 8 14 14 C 1.53784 * 113.61415 * 117.50393 * 12 11 8 15 15 C 1.53778 * 87.08069 * 89.11592 * 14 12 11 16 16 H 1.09007 * 113.61695 * 270.88415 * 15 14 12 17 17 N 1.46500 * 113.61570 * 139.98432 * 15 14 12 18 18 C 1.34429 * 126.82024 * 347.50217 * 17 15 14 19 19 N 1.30831 * 108.07818 * 179.97438 * 18 17 15 20 20 C 1.33247 * 109.82905 * 359.97438 * 19 18 17 21 21 N 1.30716 * 108.94257 * 359.75783 * 20 19 18 22 22 C 1.53779 * 87.08335 * 25.43410 * 15 14 12 23 23 C 1.33392 * 114.92257 * 0.24650 * 7 3 2 24 24 C 1.50692 * 125.20638 * 180.02562 * 23 7 3 25 25 S 1.75881 * 125.20653 * 180.14114 * 2 1 3 26 26 H 1.09006 * 109.47255 * 87.39490 * 1 2 3 27 27 H 1.09007 * 109.47322 * 207.38743 * 1 2 3 28 28 H 1.09002 * 109.47845 * 327.39099 * 1 2 3 29 29 H 1.09001 * 109.47329 * 184.79323 * 4 3 2 30 30 H 0.96699 * 113.99797 * 180.02562 * 5 4 3 31 31 H 1.48506 * 109.99780 * 60.00374 * 6 4 3 32 32 H 1.48502 * 110.00178 * 181.31591 * 6 4 3 33 33 H 0.97006 * 119.99607 * 245.00022 * 11 8 7 34 34 H 1.08998 * 113.61973 * 203.66273 * 14 12 11 35 35 H 1.09004 * 113.61514 * 334.57282 * 14 12 11 36 36 H 1.08007 * 125.96248 * 359.92818 * 18 17 15 37 37 H 1.08003 * 125.52860 * 179.97438 * 20 19 18 38 38 H 1.08996 * 113.61695 * 220.01836 * 22 15 14 39 39 H 1.09003 * 113.61308 * 89.10992 * 22 15 14 40 40 H 1.09003 * 109.47516 * 83.63395 * 24 23 7 41 41 H 1.08999 * 109.47182 * 203.63383 * 24 23 7 42 42 H 1.08997 * 109.47311 * 323.63621 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2758 1.0900 0.0000 4 6 1.7050 2.4847 0.0007 5 8 0.9940 2.7078 1.2200 6 14 0.5417 2.6802 -1.4412 7 6 3.6378 0.8430 0.0053 8 16 4.8355 2.1354 0.0133 9 8 4.2331 3.2365 0.6798 10 8 6.0583 1.5467 0.4342 11 7 5.0594 2.6060 -1.5585 12 6 3.9597 3.2268 -2.3010 13 1 2.9954 3.1088 -1.8067 14 6 4.2537 4.6694 -2.7455 15 6 4.8516 4.0687 -4.0286 16 1 5.9138 3.8368 -3.9485 17 7 4.5230 4.8253 -5.2393 18 6 3.6018 5.7972 -5.3567 19 7 3.6135 6.2203 -6.5947 20 6 4.5252 5.5458 -7.2942 21 7 5.1124 4.6839 -6.5062 22 6 3.9368 2.8553 -3.7931 23 6 3.9751 -0.4476 0.0044 24 6 5.3860 -0.9769 0.0099 25 16 2.5209 -1.4371 -0.0035 26 1 -0.3634 0.0467 -1.0266 27 1 -0.3634 -0.9125 0.4728 28 1 -0.3635 0.8656 0.5538 29 1 2.5150 3.2089 -0.0853 30 1 0.5985 3.5875 1.2893 31 1 -0.5675 1.6983 -1.3357 32 1 -0.0037 4.0611 -1.4703 33 1 5.9187 2.4704 -1.9876 34 1 3.3570 5.2643 -2.9186 35 1 4.9863 5.1786 -2.1192 36 1 2.9629 6.1643 -4.5670 37 1 4.7458 5.6904 -8.3416 38 1 4.4134 1.8999 -4.0126 39 1 2.9533 2.9543 -4.2526 40 1 5.7615 -0.9998 1.0330 41 1 5.3974 -1.9851 -0.4039 42 1 6.0197 -0.3285 -0.5952 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15494200_15065288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:12:16 Heat of formation + Delta-G solvation = 78.470886 kcal Electronic energy + Delta-G solvation = -30741.930065 eV Core-core repulsion = 26560.731295 eV Total energy + Delta-G solvation = -4181.198769 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.13830 -40.80948 -40.22626 -38.58320 -37.32425 -37.01467 -35.04245 -34.41484 -32.66298 -31.95839 -31.02875 -28.28523 -27.31972 -26.55714 -25.99538 -23.33163 -23.19085 -22.87985 -21.20567 -20.83121 -20.06013 -19.46493 -18.73908 -18.31470 -18.18161 -17.58872 -17.22107 -16.84525 -16.40217 -16.26573 -16.00281 -15.68801 -15.41634 -15.26359 -15.21464 -14.74596 -14.54912 -14.44167 -14.21569 -14.17562 -14.02594 -13.99114 -13.74164 -13.46918 -13.25644 -13.10990 -13.06310 -12.90757 -12.75095 -12.68985 -12.59612 -12.22550 -11.90069 -11.73688 -11.46906 -10.96801 -10.95456 -10.76031 -10.63071 -10.55565 -10.04065 -9.48683 -5.23211 -0.89844 -0.47587 0.32052 0.61738 0.63021 0.77498 1.09518 1.23741 1.36552 1.77211 1.82603 2.03318 2.51920 2.72162 2.93148 3.10269 3.15587 3.21582 3.33028 3.42426 3.54566 3.55631 3.73291 3.81737 3.95449 4.01259 4.05188 4.07718 4.17981 4.21254 4.38689 4.42905 4.43820 4.45611 4.47692 4.57115 4.60209 4.80003 4.83215 4.92705 5.00081 5.16650 5.29499 5.46127 5.57052 5.78566 6.38468 7.12609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.168 4.168 3 C -0.036 4.036 4 C -0.083 4.083 5 O -0.521 6.521 6 Si 0.628 3.372 7 C -0.682 4.682 8 S 2.705 3.295 9 O -0.939 6.939 10 O -0.946 6.946 11 N -1.098 6.098 12 C 0.129 3.871 13 H 0.109 0.891 14 C -0.159 4.159 15 C 0.133 3.867 16 H 0.129 0.871 17 N -0.370 5.370 18 C 0.252 3.748 19 N -0.544 5.544 20 C 0.199 3.801 21 N -0.318 5.318 22 C -0.152 4.152 23 C -0.048 4.048 24 C -0.111 4.111 25 S 0.164 5.836 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.382 0.618 31 H -0.219 1.219 32 H -0.245 1.245 33 H 0.423 0.577 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.218 0.782 37 H 0.217 0.783 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 -2.077 -2.291 3.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.286 4.286 3 C -0.046 4.046 4 C -0.194 4.194 5 O -0.328 6.328 6 Si 0.526 3.474 7 C -0.782 4.782 8 S 2.793 3.207 9 O -0.929 6.929 10 O -0.936 6.936 11 N -0.857 5.857 12 C 0.020 3.980 13 H 0.126 0.874 14 C -0.200 4.200 15 C 0.030 3.970 16 H 0.146 0.854 17 N -0.161 5.161 18 C -0.045 4.045 19 N -0.271 5.271 20 C -0.104 4.104 21 N -0.145 5.145 22 C -0.192 4.192 23 C -0.169 4.169 24 C -0.169 4.169 25 S 0.431 5.569 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.230 0.770 31 H -0.143 1.143 32 H -0.169 1.169 33 H 0.259 0.741 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.234 0.766 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.429 -4.016 -1.923 4.676 hybrid contribution -0.274 1.503 0.839 1.743 sum -1.703 -2.513 -1.084 3.224 Atomic orbital electron populations 1.20848 0.87309 1.04093 1.03444 1.24370 1.00284 0.95050 1.08868 1.17420 0.89874 0.94480 1.02792 1.25185 1.02565 0.95474 0.96154 1.86563 1.71989 1.38406 1.35822 0.96266 0.84152 0.82679 0.84308 1.29318 1.11477 1.13327 1.24038 1.01716 0.73197 0.73632 0.72158 1.93563 1.77577 1.50649 1.71097 1.93624 1.42612 1.78237 1.79152 1.55494 1.20862 1.75699 1.33624 1.21547 0.89732 0.93348 0.93338 0.87359 1.24015 1.03428 0.97589 0.94924 1.23078 1.01623 0.92561 0.79750 0.85350 1.50547 1.28109 1.28797 1.08644 1.26015 0.93126 0.88832 0.96478 1.70606 1.23953 1.29506 1.03009 1.26088 0.91888 0.91229 1.01166 1.78090 1.21819 1.24824 0.89766 1.23943 1.01830 0.99251 0.94205 1.24574 1.00843 0.94904 0.96611 1.20922 0.88037 1.02280 1.05688 1.84443 0.95024 1.08262 1.69196 0.89602 0.90783 0.89340 0.88136 0.76981 1.14263 1.16891 0.74088 0.87197 0.87956 0.76623 0.76622 0.88394 0.87152 0.88068 0.90011 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.02 8.14 36.00 0.29 0.31 16 2 C -0.17 -0.13 6.09 -36.01 -0.22 -0.35 16 3 C -0.04 -0.04 4.46 -106.25 -0.47 -0.51 16 4 C -0.08 -0.02 1.81 36.01 0.07 0.05 16 5 O -0.52 -0.71 11.69 -35.23 -0.41 -1.12 16 6 Si 0.63 -1.28 27.92 -169.99 -4.75 -6.03 16 7 C -0.68 -0.42 5.86 -41.21 -0.24 -0.66 16 8 S 2.71 0.57 5.33 -107.50 -0.57 0.00 16 9 O -0.94 -2.62 14.64 -57.17 -0.84 -3.46 16 10 O -0.95 -1.99 14.87 -57.17 -0.85 -2.84 16 11 N -1.10 4.21 5.73 -4.20 -0.02 4.19 16 12 C 0.13 -0.59 4.36 -67.12 -0.29 -0.88 16 13 H 0.11 -0.48 2.26 -51.93 -0.12 -0.60 16 14 C -0.16 0.83 7.24 -25.92 -0.19 0.64 16 15 C 0.13 -0.52 4.89 -67.12 -0.33 -0.85 16 16 H 0.13 -0.57 8.11 -51.93 -0.42 -0.99 16 17 N -0.37 0.32 3.83 -55.32 -0.21 0.11 16 18 C 0.25 -0.26 11.87 -90.66 -1.08 -1.33 16 19 N -0.54 -1.05 11.19 -15.83 -0.18 -1.22 16 20 C 0.20 0.27 13.03 -91.81 -1.20 -0.93 16 21 N -0.32 -0.60 12.70 29.29 0.37 -0.23 16 22 C -0.15 0.79 7.66 -25.92 -0.20 0.59 16 23 C -0.05 0.00 6.50 -36.01 -0.23 -0.23 16 24 C -0.11 0.17 8.86 36.00 0.32 0.49 16 25 S 0.16 -0.04 23.31 -107.50 -2.51 -2.55 16 26 H 0.09 -0.10 6.29 -51.93 -0.33 -0.43 16 27 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.09 0.05 5.83 -51.93 -0.30 -0.25 16 29 H 0.10 -0.03 3.23 -51.93 -0.17 -0.19 16 30 H 0.38 -0.95 8.74 45.56 0.40 -0.55 16 31 H -0.22 0.16 4.55 56.52 0.26 0.41 16 32 H -0.24 0.19 7.11 56.52 0.40 0.59 16 33 H 0.42 -2.55 8.78 -34.47 -0.30 -2.86 16 34 H 0.11 -0.77 6.39 -51.93 -0.33 -1.11 16 35 H 0.10 -0.53 8.14 -51.93 -0.42 -0.95 16 36 H 0.22 -1.15 6.75 -52.48 -0.35 -1.50 16 37 H 0.22 -0.36 8.06 -52.48 -0.42 -0.78 16 38 H 0.10 -0.55 8.14 -51.93 -0.42 -0.97 16 39 H 0.11 -0.64 8.14 -51.93 -0.42 -1.07 16 40 H 0.10 -0.11 8.14 -51.93 -0.42 -0.54 16 41 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 42 H 0.10 -0.22 6.49 -51.93 -0.34 -0.55 16 LS Contribution 353.38 15.07 5.33 5.33 Total: 0.00 -12.05 353.38 -12.97 -25.02 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: -4.56 Total: -13.52 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -3.77 Total: -3.68 kcal Atomic # 7 Polarization: 2.88 SS G_CDS: -0.04 Total: 2.84 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -2.10 Total: -7.42 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -4.75 Total: -6.03 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -3.08 Total: -2.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -12.05 -12.97 -25.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15494200_15065288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.493 kcal (2) G-P(sol) polarization free energy of solvation -12.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds