Wall clock time and date at job start Mon Mar 8 2021 09:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39634 * 120.14973 * 64.54156 * 3 2 1 5 5 C 1.37952 * 119.84392 * 179.97438 * 4 3 2 6 6 C 1.38366 * 120.15200 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.84793 * 179.97438 * 6 5 4 8 8 H 1.09001 * 112.84754 * 11.19015 * 7 6 5 9 9 C 1.54046 * 113.62419 * 142.49960 * 7 6 5 10 10 C 1.53777 * 86.98487 * 139.97633 * 9 7 6 11 11 H 1.09004 * 113.61256 * 219.98201 * 10 9 7 12 12 N 1.46504 * 113.61213 * 89.16621 * 10 9 7 13 13 S 1.65601 * 120.00053 * 115.86123 * 12 10 9 14 14 O 1.42104 * 106.40058 * 311.46258 * 13 12 10 15 15 O 1.42101 * 106.40330 * 178.53992 * 13 12 10 16 16 C 1.76203 * 107.21915 * 64.99970 * 13 12 10 17 17 C 1.38231 * 119.99871 * 269.88885 * 16 13 12 18 18 C 1.38243 * 120.00070 * 179.97438 * 17 16 13 19 19 C 1.38235 * 119.99602 * 0.07188 * 18 17 16 20 20 C 1.50701 * 119.99808 * 179.97438 * 19 18 17 21 21 O 1.42907 * 109.47056 * 64.99883 * 20 19 18 22 22 Si 1.86292 * 109.47180 * 185.00039 * 20 19 18 23 23 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 24 24 C 1.38234 * 120.00251 * 89.99845 * 16 13 12 25 25 C 1.53771 * 87.17496 * 334.57282 * 10 9 7 26 26 C 1.38357 * 120.30406 * 0.24795 * 6 5 4 27 27 C 1.37953 * 120.15136 * 359.49574 * 26 6 5 28 28 H 1.07999 * 120.07900 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.92410 * 180.02562 * 5 4 3 30 30 H 1.09005 * 113.61105 * 25.47331 * 9 7 6 31 31 H 1.08992 * 113.69693 * 254.49802 * 9 7 6 32 32 H 0.96997 * 119.99713 * 295.85839 * 12 10 9 33 33 H 1.08001 * 120.00367 * 0.08728 * 17 16 13 34 34 H 1.08000 * 119.99728 * 180.34119 * 18 17 16 35 35 H 1.09004 * 109.47205 * 305.00336 * 20 19 18 36 36 H 0.96692 * 113.99617 * 179.97438 * 21 20 19 37 37 H 1.48502 * 110.00099 * 299.99847 * 22 20 19 38 38 H 1.48498 * 110.00011 * 61.31791 * 22 20 19 39 39 H 1.08001 * 120.00350 * 179.97438 * 23 19 18 40 40 H 1.08007 * 119.99474 * 359.97438 * 24 16 13 41 41 H 1.09003 * 113.61751 * 140.01979 * 25 10 9 42 42 H 1.09003 * 113.61891 * 270.92340 * 25 10 9 43 43 H 1.07997 * 119.92334 * 179.74658 * 26 6 5 44 44 H 1.08001 * 120.07423 * 180.27558 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.5181 -1.0902 5 6 4.6491 -0.5138 -1.0838 6 6 5.3374 0.0024 -0.0002 7 6 6.8444 0.0031 -0.0001 8 1 7.2678 -0.2443 -0.9736 9 6 7.4611 1.2604 0.6415 10 6 8.5065 0.3262 1.2732 11 1 8.7595 0.5857 2.3013 12 7 9.6877 0.1139 0.4330 13 16 11.1736 0.6344 0.9465 14 8 11.0012 1.9773 1.3781 15 8 12.1018 0.2546 -0.0601 16 6 11.5862 -0.3003 2.3821 17 6 11.2230 0.1593 3.6341 18 6 11.5462 -0.5743 4.7604 19 6 12.2340 -1.7667 4.6345 20 6 12.5869 -2.5662 5.8623 21 8 11.3893 -3.0277 6.4907 22 14 13.6338 -4.0271 5.3723 23 6 12.5981 -2.2259 3.3826 24 6 12.2752 -1.4921 2.2564 25 6 7.4607 -0.7955 1.1606 26 6 4.6486 0.5128 1.0858 27 6 3.2691 0.5196 1.0903 28 1 2.7335 -0.9217 -1.9364 29 1 5.1930 -0.9143 -1.9265 30 1 6.8097 1.7430 1.3703 31 1 7.8807 1.9601 -0.0812 32 1 9.5995 -0.3316 -0.4241 33 1 10.6850 1.0906 3.7324 34 1 11.2575 -0.2179 5.7381 35 1 13.1431 -1.9375 6.5577 36 1 11.5409 -3.5512 7.2894 37 1 12.8868 -4.8922 4.4242 38 1 14.8967 -3.5598 4.7463 39 1 13.1359 -3.1573 3.2843 40 1 12.5602 -1.8505 1.2782 41 1 7.8801 -1.7546 0.8565 42 1 6.8092 -0.8742 2.0309 43 1 5.1921 0.9104 1.9300 44 1 2.7326 0.9224 1.9367 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15505408_13421422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:15 Heat of formation + Delta-G solvation = 13.207266 kcal Electronic energy + Delta-G solvation = -29837.733800 eV Core-core repulsion = 25621.801380 eV Total energy + Delta-G solvation = -4215.932420 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.102 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.49488 -40.75657 -39.68930 -38.28345 -37.81995 -37.33478 -36.91716 -34.49317 -33.27373 -32.34640 -32.30444 -31.87097 -27.34333 -26.91640 -26.82921 -24.28165 -23.98401 -23.51232 -22.92104 -21.03602 -20.50089 -19.97781 -19.35153 -18.65446 -18.59382 -17.46618 -17.21241 -16.98804 -16.87191 -16.65092 -16.17080 -15.84285 -15.77286 -15.34497 -15.18007 -15.02963 -14.84456 -14.76996 -14.58321 -14.47279 -14.35424 -14.03203 -13.98068 -13.75594 -13.71209 -13.57495 -13.24699 -13.14621 -13.08551 -12.90718 -12.89842 -12.48102 -12.41607 -12.18076 -12.03164 -11.97548 -11.82175 -11.43072 -10.76869 -10.63632 -10.39835 -10.26003 -10.15321 -9.79491 -5.14532 -0.79668 -0.45232 -0.34231 0.06198 0.21528 1.06259 1.47335 1.71101 1.77004 1.78359 1.89044 2.19923 2.65746 2.77522 2.86630 3.07559 3.14955 3.24045 3.43144 3.44996 3.52665 3.58391 3.66121 3.70132 3.76440 3.76504 3.89897 3.96467 4.00416 4.11198 4.17316 4.23762 4.31737 4.45521 4.45943 4.53879 4.63212 4.67185 4.70514 4.76547 4.81418 4.84805 4.86132 4.90536 5.07415 5.12294 5.18567 5.21055 5.43221 5.55532 5.67543 5.75912 6.38172 6.51890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.250 3.750 3 C -0.033 4.033 4 C -0.066 4.066 5 C -0.116 4.116 6 C -0.041 4.041 7 C -0.080 4.080 8 H 0.104 0.896 9 C -0.143 4.143 10 C 0.125 3.875 11 H 0.103 0.897 12 N -1.097 6.097 13 S 2.697 3.303 14 O -0.948 6.948 15 O -0.954 6.954 16 C -0.675 4.675 17 C -0.020 4.020 18 C -0.110 4.110 19 C -0.017 4.017 20 C -0.082 4.082 21 O -0.543 6.543 22 Si 0.686 3.314 23 C -0.145 4.145 24 C -0.010 4.010 25 C -0.135 4.135 26 C -0.119 4.119 27 C -0.066 4.066 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.421 0.579 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.386 0.614 37 H -0.248 1.248 38 H -0.252 1.252 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.135 0.865 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -3.845 4.790 7.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.065 4.065 3 C -0.036 4.036 4 C -0.087 4.087 5 C -0.134 4.134 6 C -0.042 4.042 7 C -0.098 4.098 8 H 0.122 0.878 9 C -0.183 4.183 10 C 0.017 3.983 11 H 0.121 0.879 12 N -0.856 5.856 13 S 2.786 3.214 14 O -0.937 6.937 15 O -0.944 6.944 16 C -0.761 4.761 17 C -0.039 4.039 18 C -0.129 4.129 19 C -0.017 4.017 20 C -0.193 4.193 21 O -0.350 6.350 22 Si 0.587 3.413 23 C -0.163 4.163 24 C -0.030 4.030 25 C -0.174 4.174 26 C -0.137 4.137 27 C -0.086 4.086 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.256 0.744 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.235 0.765 37 H -0.172 1.172 38 H -0.177 1.177 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.153 0.847 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.753 -3.218 3.422 5.445 hybrid contribution 0.080 -0.287 0.103 0.316 sum 2.834 -3.505 3.525 5.722 Atomic orbital electron populations 1.81313 1.12089 1.08226 1.07232 1.25756 0.92718 0.93988 0.94068 1.16017 0.84322 1.05779 0.97522 1.21217 0.94326 0.96451 0.96699 1.21027 0.93447 1.00249 0.98701 1.19967 0.95201 0.95399 0.93583 1.21726 0.90403 0.97954 0.99743 0.87812 1.23643 0.97328 0.96336 1.00953 1.21642 0.85131 0.97468 0.94013 0.87891 1.55378 1.22597 1.77194 1.30404 1.01927 0.72182 0.73913 0.73386 1.93626 1.85345 1.32002 1.82767 1.93624 1.60244 1.83929 1.56594 1.31004 1.15035 1.12025 1.18077 1.21032 0.94026 0.98063 0.90759 1.21177 0.98052 0.94179 0.99486 1.19726 0.94533 0.94286 0.93199 1.24816 0.93795 1.05326 0.95338 1.86473 1.29065 1.74058 1.45375 0.95071 0.78448 0.80743 0.87087 1.21054 1.02407 1.00296 0.92520 1.20833 0.91505 0.91051 0.99563 1.23459 0.97127 0.98018 0.98825 1.20971 0.93375 1.00522 0.98816 1.21201 0.94265 0.96454 0.96720 0.84887 0.84877 0.88126 0.89751 0.74395 0.83653 0.84310 0.90035 0.76544 1.17249 1.17666 0.85417 0.83722 0.90001 0.88159 0.84689 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -2.07 18.54 41.84 0.78 -1.30 16 2 C 0.25 0.52 15.33 -22.47 -0.34 0.17 16 3 C -0.03 0.02 5.73 -106.93 -0.61 -0.59 16 4 C -0.07 0.12 9.76 -39.17 -0.38 -0.26 16 5 C -0.12 0.32 9.69 -39.64 -0.38 -0.06 16 6 C -0.04 0.12 5.30 -104.53 -0.55 -0.43 16 7 C -0.08 0.33 3.81 -90.82 -0.35 -0.02 16 8 H 0.10 -0.50 8.08 -51.93 -0.42 -0.92 16 9 C -0.14 0.52 7.27 -25.78 -0.19 0.33 16 10 C 0.13 -0.44 4.42 -67.12 -0.30 -0.74 16 11 H 0.10 -0.44 7.76 -51.93 -0.40 -0.84 16 12 N -1.10 3.06 5.73 -4.20 -0.02 3.04 16 13 S 2.70 1.17 5.68 -107.50 -0.61 0.56 16 14 O -0.95 -2.93 17.04 -57.17 -0.97 -3.90 16 15 O -0.95 -3.23 17.28 -57.17 -0.99 -4.22 16 16 C -0.68 -0.27 5.95 -39.59 -0.24 -0.51 16 17 C -0.02 0.00 9.23 -39.58 -0.37 -0.36 16 18 C -0.11 -0.01 9.69 -39.58 -0.38 -0.39 16 19 C -0.02 -0.01 5.38 -104.63 -0.56 -0.57 16 20 C -0.08 0.14 2.79 36.01 0.10 0.24 16 21 O -0.54 0.90 12.81 -35.23 -0.45 0.45 16 22 Si 0.69 -1.61 29.85 -169.99 -5.07 -6.68 16 23 C -0.14 -0.16 8.67 -39.59 -0.34 -0.50 16 24 C -0.01 -0.01 9.52 -39.58 -0.38 -0.38 16 25 C -0.14 0.59 7.32 -25.93 -0.19 0.40 16 26 C -0.12 0.37 8.57 -39.64 -0.34 0.03 16 27 C -0.07 0.14 9.76 -39.17 -0.38 -0.25 16 28 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 29 H 0.13 -0.59 8.05 -52.49 -0.42 -1.01 16 30 H 0.10 -0.46 6.32 -51.93 -0.33 -0.79 16 31 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 32 H 0.42 -1.90 8.81 -34.47 -0.30 -2.21 16 33 H 0.15 -0.29 7.62 -52.49 -0.40 -0.69 16 34 H 0.14 -0.22 8.06 -52.49 -0.42 -0.64 16 35 H 0.08 -0.27 7.96 -51.93 -0.41 -0.69 16 36 H 0.39 -2.52 8.74 45.56 0.40 -2.12 16 37 H -0.25 -0.15 7.05 56.52 0.40 0.25 16 38 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 39 H 0.13 0.04 4.87 -52.49 -0.26 -0.22 16 40 H 0.15 -0.11 7.62 -52.48 -0.40 -0.51 16 41 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 42 H 0.10 -0.48 7.71 -51.93 -0.40 -0.88 16 43 H 0.14 -0.67 6.66 -52.49 -0.35 -1.02 16 44 H 0.13 -0.43 8.06 -52.49 -0.42 -0.86 16 LS Contribution 389.92 15.07 5.88 5.88 Total: 0.00 -12.45 389.92 -12.67 -25.12 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: -5.01 Total: -15.05 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -6.19 Total: -3.90 kcal Atomic # 7 Polarization: 0.99 SS G_CDS: 0.75 Total: 1.74 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -2.41 Total: -7.67 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.07 Total: -6.68 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -0.61 Total: 0.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -12.45 -12.67 -25.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_13421422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.324 kcal (2) G-P(sol) polarization free energy of solvation -12.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds