Wall clock time and date at job start Mon Mar 8 2021 09:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39634 * 120.14973 * 64.54156 * 3 2 1 5 5 C 1.37952 * 119.84392 * 179.97438 * 4 3 2 6 6 C 1.38366 * 120.15200 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.84793 * 179.97438 * 6 5 4 8 8 H 1.09001 * 112.84754 * 11.19015 * 7 6 5 9 9 C 1.54046 * 113.62419 * 142.49960 * 7 6 5 10 10 C 1.53777 * 86.98487 * 139.97633 * 9 7 6 11 11 H 1.09004 * 113.61256 * 219.98201 * 10 9 7 12 12 N 1.46504 * 113.61213 * 89.16621 * 10 9 7 13 13 S 1.65601 * 120.00053 * 115.86123 * 12 10 9 14 14 O 1.42104 * 106.40058 * 311.46258 * 13 12 10 15 15 O 1.42101 * 106.40330 * 178.53992 * 13 12 10 16 16 C 1.76203 * 107.21915 * 64.99970 * 13 12 10 17 17 C 1.38231 * 119.99871 * 269.88885 * 16 13 12 18 18 C 1.38243 * 120.00070 * 179.97438 * 17 16 13 19 19 C 1.38235 * 119.99602 * 0.07188 * 18 17 16 20 20 C 1.50701 * 119.99808 * 179.97438 * 19 18 17 21 21 O 1.42907 * 109.47056 * 64.99883 * 20 19 18 22 22 Si 1.86292 * 109.47180 * 185.00039 * 20 19 18 23 23 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 24 24 C 1.38234 * 120.00251 * 89.99845 * 16 13 12 25 25 C 1.53771 * 87.17496 * 334.57282 * 10 9 7 26 26 C 1.38357 * 120.30406 * 0.24795 * 6 5 4 27 27 C 1.37953 * 120.15136 * 359.49574 * 26 6 5 28 28 H 1.07999 * 120.07900 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.92410 * 180.02562 * 5 4 3 30 30 H 1.09005 * 113.61105 * 25.47331 * 9 7 6 31 31 H 1.08992 * 113.69693 * 254.49802 * 9 7 6 32 32 H 0.96997 * 119.99713 * 295.85839 * 12 10 9 33 33 H 1.08001 * 120.00367 * 0.08728 * 17 16 13 34 34 H 1.08000 * 119.99728 * 180.34119 * 18 17 16 35 35 H 1.09004 * 109.47205 * 305.00336 * 20 19 18 36 36 H 0.96692 * 113.99617 * 179.97438 * 21 20 19 37 37 H 1.48502 * 110.00099 * 299.99847 * 22 20 19 38 38 H 1.48498 * 110.00011 * 61.31791 * 22 20 19 39 39 H 1.08001 * 120.00350 * 179.97438 * 23 19 18 40 40 H 1.08007 * 119.99474 * 359.97438 * 24 16 13 41 41 H 1.09003 * 113.61751 * 140.01979 * 25 10 9 42 42 H 1.09003 * 113.61891 * 270.92340 * 25 10 9 43 43 H 1.07997 * 119.92334 * 179.74658 * 26 6 5 44 44 H 1.08001 * 120.07423 * 180.27558 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.5181 -1.0902 5 6 4.6491 -0.5138 -1.0838 6 6 5.3374 0.0024 -0.0002 7 6 6.8444 0.0031 -0.0001 8 1 7.2678 -0.2443 -0.9736 9 6 7.4611 1.2604 0.6415 10 6 8.5065 0.3262 1.2732 11 1 8.7595 0.5857 2.3013 12 7 9.6877 0.1139 0.4330 13 16 11.1736 0.6344 0.9465 14 8 11.0012 1.9773 1.3781 15 8 12.1018 0.2546 -0.0601 16 6 11.5862 -0.3003 2.3821 17 6 11.2230 0.1593 3.6341 18 6 11.5462 -0.5743 4.7604 19 6 12.2340 -1.7667 4.6345 20 6 12.5869 -2.5662 5.8623 21 8 11.3893 -3.0277 6.4907 22 14 13.6338 -4.0271 5.3723 23 6 12.5981 -2.2259 3.3826 24 6 12.2752 -1.4921 2.2564 25 6 7.4607 -0.7955 1.1606 26 6 4.6486 0.5128 1.0858 27 6 3.2691 0.5196 1.0903 28 1 2.7335 -0.9217 -1.9364 29 1 5.1930 -0.9143 -1.9265 30 1 6.8097 1.7430 1.3703 31 1 7.8807 1.9601 -0.0812 32 1 9.5995 -0.3316 -0.4241 33 1 10.6850 1.0906 3.7324 34 1 11.2575 -0.2179 5.7381 35 1 13.1431 -1.9375 6.5577 36 1 11.5409 -3.5512 7.2894 37 1 12.8868 -4.8922 4.4242 38 1 14.8967 -3.5598 4.7463 39 1 13.1359 -3.1573 3.2843 40 1 12.5602 -1.8505 1.2782 41 1 7.8801 -1.7546 0.8565 42 1 6.8092 -0.8742 2.0309 43 1 5.1921 0.9104 1.9300 44 1 2.7326 0.9224 1.9367 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15505408_13421422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:13 Heat of formation + Delta-G solvation = 10.982741 kcal Electronic energy + Delta-G solvation = -29837.830263 eV Core-core repulsion = 25621.801380 eV Total energy + Delta-G solvation = -4216.028883 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.102 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.23666 -40.71085 -39.50540 -38.42271 -37.64700 -37.48194 -37.06419 -34.33051 -33.21990 -32.32100 -32.09395 -31.69630 -27.24686 -26.66800 -26.54197 -24.25547 -23.75901 -23.32524 -22.86561 -20.94333 -20.33631 -19.84411 -19.30062 -18.61923 -18.43885 -17.37147 -17.03976 -16.91346 -16.70885 -16.49430 -16.14488 -15.79948 -15.58621 -15.25577 -15.16402 -14.90696 -14.77914 -14.66641 -14.38980 -14.37762 -14.24663 -13.99394 -13.94346 -13.79760 -13.63470 -13.42730 -13.33335 -13.24760 -13.06828 -12.88285 -12.80466 -12.42061 -12.19432 -12.17216 -11.89581 -11.70269 -11.67336 -11.13137 -10.66168 -10.44847 -10.30390 -10.21750 -9.92967 -9.62723 -4.98950 -0.79814 -0.46176 -0.21341 0.06665 0.44408 1.22931 1.57433 1.59731 1.83586 1.89682 1.91312 2.22661 2.65544 2.86450 2.87548 3.14092 3.25741 3.52436 3.58027 3.64291 3.72289 3.75119 3.85182 3.94202 4.00292 4.05883 4.06241 4.12438 4.23892 4.29179 4.33625 4.43887 4.53046 4.53919 4.72153 4.76456 4.82553 4.84345 4.87949 4.91514 4.99478 5.08647 5.15454 5.16159 5.20150 5.29978 5.38936 5.50541 5.59539 5.69729 5.91039 6.03845 6.40814 6.84488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.276 3.724 3 C -0.056 4.056 4 C -0.069 4.069 5 C -0.121 4.121 6 C -0.037 4.037 7 C -0.078 4.078 8 H 0.112 0.888 9 C -0.146 4.146 10 C 0.116 3.884 11 H 0.112 0.888 12 N -1.086 6.086 13 S 2.717 3.283 14 O -0.975 6.975 15 O -0.988 6.988 16 C -0.678 4.678 17 C -0.023 4.023 18 C -0.116 4.116 19 C -0.033 4.033 20 C -0.084 4.084 21 O -0.558 6.558 22 Si 0.768 3.232 23 C -0.164 4.164 24 C -0.022 4.022 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.067 4.067 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.429 0.571 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.104 0.896 36 H 0.407 0.593 37 H -0.292 1.292 38 H -0.292 1.292 39 H 0.126 0.874 40 H 0.151 0.849 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.157 0.843 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -3.836 6.023 8.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.038 4.038 3 C -0.059 4.059 4 C -0.090 4.090 5 C -0.138 4.138 6 C -0.038 4.038 7 C -0.096 4.096 8 H 0.130 0.870 9 C -0.185 4.185 10 C 0.008 3.992 11 H 0.130 0.870 12 N -0.847 5.847 13 S 2.807 3.193 14 O -0.965 6.965 15 O -0.978 6.978 16 C -0.765 4.765 17 C -0.042 4.042 18 C -0.134 4.134 19 C -0.034 4.034 20 C -0.194 4.194 21 O -0.368 6.368 22 Si 0.675 3.325 23 C -0.182 4.182 24 C -0.041 4.041 25 C -0.168 4.168 26 C -0.137 4.137 27 C -0.087 4.087 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.267 0.733 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.122 0.878 36 H 0.259 0.741 37 H -0.220 1.220 38 H -0.219 1.219 39 H 0.144 0.856 40 H 0.169 0.831 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.174 0.826 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.284 -3.213 4.678 6.557 hybrid contribution -0.012 -0.324 -0.300 0.442 sum 3.273 -3.537 4.378 6.511 Atomic orbital electron populations 1.81319 1.13850 1.10753 1.09361 1.26208 0.93144 0.92155 0.92251 1.16160 0.82851 1.07926 0.98970 1.21350 0.94898 0.96219 0.96523 1.21252 0.93051 1.00113 0.99419 1.20167 0.95787 0.94461 0.93349 1.21767 0.89633 0.97805 1.00376 0.86999 1.23707 0.97411 0.96304 1.01099 1.21858 0.84788 0.98188 0.94340 0.87009 1.55076 1.21713 1.77049 1.30896 1.01082 0.72248 0.73252 0.72722 1.93586 1.85907 1.33846 1.83156 1.93573 1.62025 1.84311 1.57877 1.30948 1.15421 1.11849 1.18271 1.21322 0.93751 0.98606 0.90485 1.21443 0.97724 0.93914 1.00332 1.20113 0.94427 0.94951 0.93868 1.24856 0.93949 1.05474 0.95142 1.86423 1.29092 1.74626 1.46691 0.94250 0.74894 0.78214 0.85182 1.21208 1.03194 1.00619 0.93197 1.21002 0.91774 0.91407 0.99961 1.23453 0.96649 0.97697 0.98983 1.21215 0.92921 1.00088 0.99472 1.21366 0.94872 0.96017 0.96473 0.84334 0.83227 0.86940 0.90685 0.73291 0.81917 0.82546 0.87821 0.74113 1.21972 1.21895 0.85617 0.83104 0.89824 0.87224 0.82585 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.64 18.54 19.00 0.35 -5.28 16 2 C 0.28 1.46 15.33 88.33 1.35 2.82 16 3 C -0.06 0.07 5.73 -21.36 -0.12 -0.06 16 4 C -0.07 0.28 9.76 22.54 0.22 0.50 16 5 C -0.12 0.82 9.69 22.23 0.22 1.03 16 6 C -0.04 0.28 5.30 -19.81 -0.10 0.18 16 7 C -0.08 0.77 3.81 -10.93 -0.04 0.73 16 8 H 0.11 -1.27 8.08 -2.39 -0.02 -1.29 16 9 C -0.15 1.27 7.27 31.21 0.23 1.50 16 10 C 0.12 -0.97 4.42 45.51 0.20 -0.77 16 11 H 0.11 -1.13 7.76 -2.38 -0.02 -1.14 16 12 N -1.09 6.60 5.73 -167.20 -0.96 5.64 16 13 S 2.72 3.16 5.68 -56.49 -0.32 2.83 16 14 O -0.98 -6.15 17.04 -128.00 -2.18 -8.34 16 15 O -0.99 -7.59 17.28 -128.00 -2.21 -9.80 16 16 C -0.68 -0.65 5.95 22.27 0.13 -0.52 16 17 C -0.02 0.02 9.23 22.27 0.21 0.23 16 18 C -0.12 0.09 9.69 22.27 0.22 0.30 16 19 C -0.03 -0.04 5.38 -19.87 -0.11 -0.14 16 20 C -0.08 0.36 2.79 71.24 0.20 0.56 16 21 O -0.56 2.67 12.81 -148.98 -1.91 0.76 16 22 Si 0.77 -3.42 29.85 68.60 2.05 -1.37 16 23 C -0.16 -0.48 8.67 22.27 0.19 -0.29 16 24 C -0.02 -0.05 9.52 22.27 0.21 0.16 16 25 C -0.13 1.35 7.32 31.12 0.23 1.58 16 26 C -0.12 0.94 8.57 22.23 0.19 1.13 16 27 C -0.07 0.32 9.76 22.54 0.22 0.54 16 28 H 0.14 -0.80 8.06 -2.91 -0.02 -0.82 16 29 H 0.15 -1.56 8.05 -2.91 -0.02 -1.58 16 30 H 0.11 -1.25 6.32 -2.38 -0.02 -1.27 16 31 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.43 -4.11 8.81 -96.75 -0.85 -4.96 16 33 H 0.16 -0.83 7.62 -2.91 -0.02 -0.85 16 34 H 0.16 -0.76 8.06 -2.91 -0.02 -0.79 16 35 H 0.10 -0.89 7.96 -2.38 -0.02 -0.91 16 36 H 0.41 -6.07 8.74 -74.06 -0.65 -6.71 16 37 H -0.29 -0.78 7.05 99.48 0.70 -0.08 16 38 H -0.29 -0.55 7.11 99.48 0.71 0.15 16 39 H 0.13 0.27 4.87 -2.91 -0.01 0.26 16 40 H 0.15 -0.02 7.62 -2.91 -0.02 -0.05 16 41 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H 0.11 -1.31 7.71 -2.39 -0.02 -1.33 16 43 H 0.16 -1.94 6.66 -2.91 -0.02 -1.96 16 44 H 0.14 -1.00 8.06 -2.91 -0.02 -1.02 16 Total: 0.00 -29.85 389.92 -1.94 -31.79 By element: Atomic # 1 Polarization: -25.32 SS G_CDS: -0.39 Total: -25.71 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 3.64 Total: 9.48 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.61 Total: 0.36 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -6.30 Total: -17.38 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.05 Total: -1.37 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -0.32 Total: 2.83 kcal Total: -29.85 -1.94 -31.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_13421422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.771 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds