Wall clock time and date at job start Mon Mar 8 2021 09:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39631 * 120.14850 * 148.70615 * 3 2 1 5 5 C 1.37945 * 119.84757 * 179.97438 * 4 3 2 6 6 C 1.38363 * 120.14768 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.84508 * 179.97438 * 6 5 4 8 8 H 1.08997 * 112.91128 * 348.75207 * 7 6 5 9 9 C 1.53781 * 113.61417 * 120.00360 * 7 6 5 10 10 C 1.53786 * 87.17350 * 139.93966 * 9 7 6 11 11 H 1.09000 * 113.61138 * 220.06261 * 10 9 7 12 12 N 1.46496 * 113.61518 * 89.15486 * 10 9 7 13 13 S 1.65600 * 119.99627 * 145.00034 * 12 10 9 14 14 O 1.42098 * 106.40213 * 178.54203 * 13 12 10 15 15 O 1.42103 * 106.40185 * 311.46217 * 13 12 10 16 16 C 1.76198 * 107.21815 * 65.00124 * 13 12 10 17 17 C 1.33388 * 125.20271 * 90.00071 * 16 13 12 18 18 C 1.50702 * 122.53945 * 359.97438 * 17 16 13 19 19 O 1.42902 * 109.46948 * 285.00252 * 18 17 16 20 20 Si 1.86295 * 109.47394 * 165.00193 * 18 17 16 21 21 C 1.38420 * 114.92236 * 179.97438 * 17 16 13 22 22 C 1.33387 * 114.92288 * 0.02562 * 21 17 16 23 23 S 1.75882 * 125.20322 * 269.69280 * 16 13 12 24 24 C 1.53782 * 113.61283 * 217.50175 * 7 6 5 25 25 C 1.38362 * 120.30855 * 0.25977 * 6 5 4 26 26 C 1.37948 * 120.14683 * 359.49079 * 25 6 5 27 27 H 1.08002 * 120.07889 * 359.94978 * 4 3 2 28 28 H 1.07998 * 119.92766 * 180.02562 * 5 4 3 29 29 H 1.09002 * 113.61445 * 254.52965 * 9 7 6 30 30 H 1.09002 * 113.61408 * 25.34696 * 9 7 6 31 31 H 0.96997 * 120.00120 * 325.00538 * 12 10 9 32 32 H 1.08996 * 109.47064 * 44.99774 * 18 17 16 33 33 H 0.96698 * 114.00069 * 299.99763 * 19 18 17 34 34 H 1.48502 * 110.00389 * 180.02562 * 20 18 17 35 35 H 1.48501 * 109.99930 * 301.32108 * 20 18 17 36 36 H 1.08003 * 122.54243 * 179.97438 * 21 17 16 37 37 H 1.08000 * 125.20728 * 180.02562 * 22 21 17 38 38 H 1.08997 * 113.61668 * 334.56418 * 24 7 6 39 39 H 1.08994 * 113.61387 * 105.47152 * 24 7 6 40 40 H 1.07999 * 119.92794 * 179.73724 * 25 6 5 41 41 H 1.07997 * 120.07483 * 180.22986 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2689 1.0327 -0.6272 5 6 4.6483 1.0274 -0.6230 6 6 5.3374 0.0028 0.0013 7 6 6.8444 0.0035 0.0013 8 1 7.2684 0.7428 -0.6782 9 6 7.4604 0.0368 1.4099 10 6 8.5077 -0.9637 0.8928 11 1 8.7584 -1.7438 1.6116 12 7 9.6897 -0.3260 0.3077 13 16 11.1811 -1.0227 0.4883 14 8 12.0987 -0.1936 -0.2115 15 8 11.3130 -1.3363 1.8681 16 6 11.1456 -2.5610 -0.3702 17 6 11.4728 -2.7340 -1.6517 18 6 11.9221 -1.5980 -2.5341 19 8 10.7938 -0.7970 -2.8910 20 14 12.7096 -2.2840 -4.0769 21 6 11.3682 -4.0361 -2.1097 22 6 10.9557 -4.9204 -1.2003 23 16 10.6808 -4.1044 0.3334 24 6 7.4610 -1.3972 -0.1498 25 6 4.6493 -1.0256 0.6205 26 6 3.2698 -1.0300 0.6283 27 1 2.7322 1.8331 -1.1148 28 1 5.1917 1.8253 -1.1073 29 1 7.8790 1.0061 1.6807 30 1 6.8085 -0.3732 2.1814 31 1 9.5987 0.5043 -0.1855 32 1 12.6470 -0.9860 -1.9975 33 1 10.1067 -1.2777 -3.3725 34 1 13.1576 -1.1736 -4.9553 35 1 13.8651 -3.1447 -3.7177 36 1 11.6021 -4.3148 -3.1266 37 1 10.8168 -5.9767 -1.3772 38 1 6.8100 -2.2004 0.1950 39 1 7.8801 -1.5854 -1.1382 40 1 5.1934 -1.8245 1.1023 41 1 2.7340 -1.8314 1.1152 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15505408_13652106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:19 Heat of formation + Delta-G solvation = 20.959949 kcal Electronic energy + Delta-G solvation = -29343.847055 eV Core-core repulsion = 25217.403063 eV Total energy + Delta-G solvation = -4126.443992 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19170 -40.01466 -39.46055 -38.31438 -37.45175 -37.09761 -36.92901 -34.26680 -32.05199 -31.64861 -31.33183 -27.92059 -26.61416 -26.49166 -24.20533 -23.71855 -23.30674 -21.54352 -20.64567 -19.93636 -19.72390 -19.45770 -18.64101 -18.22028 -17.05518 -16.87811 -16.54138 -16.45768 -16.24458 -15.93189 -15.63126 -15.54659 -15.13444 -15.04422 -14.82104 -14.70599 -14.34039 -14.23140 -14.16353 -13.91753 -13.79578 -13.68542 -13.59276 -13.37677 -13.29060 -13.21920 -13.05534 -12.78296 -12.75819 -12.45867 -12.12936 -12.05582 -11.70850 -11.63753 -11.60991 -11.10415 -10.50518 -10.41949 -10.29494 -9.88967 -9.59022 -9.56227 -5.03528 -0.78924 -0.53231 -0.17387 0.36931 0.48502 0.79054 1.26405 1.34595 1.60443 1.66433 1.93117 1.96689 2.00995 2.61310 2.89957 2.91301 3.36222 3.57436 3.60344 3.61509 3.76419 3.79172 3.98976 4.04094 4.10444 4.16039 4.19379 4.31587 4.34198 4.47998 4.57232 4.59295 4.81875 4.82611 4.88426 4.95836 4.99598 5.04206 5.13080 5.19952 5.20675 5.25336 5.34247 5.43086 5.56024 5.74879 5.95248 6.10146 6.43903 6.81483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.276 3.724 3 C -0.056 4.056 4 C -0.070 4.070 5 C -0.120 4.120 6 C -0.034 4.034 7 C -0.073 4.073 8 H 0.112 0.888 9 C -0.133 4.133 10 C 0.110 3.890 11 H 0.103 0.897 12 N -1.077 6.077 13 S 2.727 3.273 14 O -0.978 6.978 15 O -0.989 6.989 16 C -0.795 4.795 17 C 0.012 3.988 18 C -0.101 4.101 19 O -0.534 6.534 20 Si 0.794 3.206 21 C -0.171 4.171 22 C -0.145 4.145 23 S 0.214 5.786 24 C -0.138 4.138 25 C -0.118 4.118 26 C -0.067 4.067 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.430 0.570 32 H 0.122 0.878 33 H 0.396 0.604 34 H -0.298 1.298 35 H -0.288 1.288 36 H 0.184 0.816 37 H 0.210 0.790 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.157 0.843 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -5.851 -4.066 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.038 4.038 3 C -0.059 4.059 4 C -0.090 4.090 5 C -0.137 4.137 6 C -0.035 4.035 7 C -0.092 4.092 8 H 0.130 0.870 9 C -0.172 4.172 10 C 0.003 3.997 11 H 0.121 0.879 12 N -0.838 5.838 13 S 2.816 3.184 14 O -0.969 6.969 15 O -0.979 6.979 16 C -0.998 4.998 17 C -0.007 4.007 18 C -0.213 4.213 19 O -0.342 6.342 20 Si 0.699 3.301 21 C -0.200 4.200 22 C -0.283 4.283 23 S 0.481 5.519 24 C -0.177 4.177 25 C -0.136 4.136 26 C -0.087 4.087 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.246 0.754 34 H -0.226 1.226 35 H -0.215 1.215 36 H 0.200 0.800 37 H 0.227 0.773 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.175 0.825 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.091 -5.771 -2.185 6.171 hybrid contribution 0.608 0.776 -1.216 1.565 sum 0.517 -4.995 -3.400 6.065 Atomic orbital electron populations 1.81319 1.13902 1.09596 1.10613 1.26236 0.93177 0.92204 0.92137 1.16159 0.82788 1.00235 1.06757 1.21340 0.94941 0.96438 0.96298 1.21243 0.92980 0.99493 1.00025 1.20146 0.95737 0.93416 0.94179 1.21663 0.89507 0.99612 0.98385 0.86998 1.23464 0.96668 1.00253 0.96820 1.21921 0.84773 0.96619 0.96397 0.87884 1.54922 1.22593 1.36566 1.69767 1.00553 0.72735 0.72638 0.72481 1.93527 1.61802 1.66682 1.74864 1.93580 1.85966 1.85493 1.32862 1.35386 1.28056 1.24537 1.11865 1.19322 0.92644 0.96837 0.91850 1.25607 0.95020 0.94168 1.06485 1.86559 1.31042 1.38065 1.78537 0.94226 0.81900 0.78745 0.75186 1.20482 1.05573 0.90832 1.03094 1.26634 1.00753 1.05751 0.95148 1.84409 1.61946 0.94221 1.11338 1.23669 0.96825 0.96667 1.00515 1.21211 0.92852 0.99540 1.00003 1.21355 0.94904 0.96394 0.96073 0.84463 0.83299 0.90395 0.87280 0.73236 0.86122 0.75364 1.22589 1.21496 0.79971 0.77324 0.86918 0.89350 0.82548 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.34 18.54 19.00 0.35 -4.98 16 2 C 0.28 1.25 15.33 88.33 1.35 2.60 16 3 C -0.06 0.12 5.73 -21.36 -0.12 0.00 16 4 C -0.07 0.34 9.76 22.54 0.22 0.56 16 5 C -0.12 0.94 9.69 22.23 0.22 1.15 16 6 C -0.03 0.31 5.30 -19.80 -0.10 0.20 16 7 C -0.07 0.81 3.80 -11.01 -0.04 0.77 16 8 H 0.11 -1.35 8.07 -2.39 -0.02 -1.37 16 9 C -0.13 1.24 7.33 31.12 0.23 1.46 16 10 C 0.11 -0.85 4.52 45.58 0.21 -0.64 16 11 H 0.10 -0.72 7.77 -2.39 -0.02 -0.74 16 12 N -1.08 4.52 5.73 -166.94 -0.96 3.56 16 13 S 2.73 10.46 5.72 -56.49 -0.32 10.13 16 14 O -0.98 -9.61 14.92 -128.00 -1.91 -11.52 16 15 O -0.99 -9.93 17.43 -128.00 -2.23 -12.16 16 16 C -0.79 0.17 6.54 66.72 0.44 0.60 16 17 C 0.01 -0.03 5.13 -20.92 -0.11 -0.14 16 18 C -0.10 0.10 1.97 71.24 0.14 0.24 16 19 O -0.53 2.22 12.88 -148.98 -1.92 0.30 16 20 Si 0.79 -3.07 30.25 68.60 2.07 -1.00 16 21 C -0.17 1.33 8.74 21.21 0.19 1.52 16 22 C -0.15 1.29 11.23 66.72 0.75 2.04 16 23 S 0.21 -0.82 23.21 -56.49 -1.31 -2.13 16 24 C -0.14 1.63 7.25 31.18 0.23 1.86 16 25 C -0.12 1.10 8.60 22.23 0.19 1.29 16 26 C -0.07 0.40 9.76 22.54 0.22 0.62 16 27 H 0.14 -0.89 8.06 -2.91 -0.02 -0.91 16 28 H 0.15 -1.67 8.05 -2.91 -0.02 -1.69 16 29 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.11 -1.19 7.73 -2.39 -0.02 -1.21 16 31 H 0.43 -2.94 8.80 -96.75 -0.85 -3.79 16 32 H 0.12 0.67 5.65 -2.39 -0.01 0.66 16 33 H 0.40 -5.56 8.70 -74.06 -0.64 -6.20 16 34 H -0.30 -1.26 7.11 99.48 0.71 -0.56 16 35 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 36 H 0.18 -2.49 5.73 -2.91 -0.02 -2.51 16 37 H 0.21 -3.22 8.06 -2.91 -0.02 -3.24 16 38 H 0.11 -1.63 6.28 -2.39 -0.02 -1.64 16 39 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H 0.16 -2.17 6.62 -2.91 -0.02 -2.19 16 41 H 0.14 -1.14 8.06 -2.91 -0.02 -1.17 16 Total: 0.00 -29.16 377.42 -2.56 -31.73 By element: Atomic # 1 Polarization: -27.72 SS G_CDS: -0.33 Total: -28.05 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 4.00 Total: 14.14 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -0.60 Total: -1.42 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -6.06 Total: -23.38 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.07 Total: -1.00 kcal Atomic # 16 Polarization: 9.63 SS G_CDS: -1.63 Total: 8.00 kcal Total: -29.16 -2.56 -31.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_13652106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.686 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds