Wall clock time and date at job start Mon Mar 8 2021 09:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39631 * 120.14861 * 112.72350 * 3 2 1 5 5 C 1.37950 * 119.84760 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.14837 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.84422 * 179.97438 * 6 5 4 8 8 H 1.08993 * 112.84924 * 11.19275 * 7 6 5 9 9 C 1.54050 * 113.69493 * 142.47065 * 7 6 5 10 10 C 1.53775 * 86.98775 * 139.98618 * 9 7 6 11 11 H 1.08996 * 113.61523 * 219.97811 * 10 9 7 12 12 N 1.46497 * 113.61324 * 89.15954 * 10 9 7 13 13 S 1.65604 * 120.00082 * 117.94779 * 12 10 9 14 14 O 1.42098 * 106.39672 * 312.68770 * 13 12 10 15 15 O 1.42099 * 106.40412 * 179.77119 * 13 12 10 16 16 C 1.76200 * 107.21930 * 66.22745 * 13 12 10 17 17 C 1.33383 * 122.53734 * 165.31159 * 16 13 12 18 18 C 1.50704 * 125.20835 * 0.02562 * 17 16 13 19 19 O 1.42898 * 109.46629 * 39.29559 * 18 17 16 20 20 Si 1.86295 * 109.47165 * 159.29631 * 18 17 16 21 21 S 1.75891 * 109.59333 * 180.26666 * 17 16 13 22 22 C 1.75891 * 90.96871 * 359.68462 * 21 17 16 23 23 C 1.33395 * 109.58968 * 0.31481 * 22 21 17 24 24 C 1.53781 * 113.60998 * 240.00028 * 7 6 5 25 25 C 1.38359 * 120.30421 * 0.23861 * 6 5 4 26 26 C 1.37944 * 120.15294 * 359.48375 * 25 6 5 27 27 H 1.08001 * 120.08155 * 0.03801 * 4 3 2 28 28 H 1.08001 * 119.92622 * 180.02562 * 5 4 3 29 29 H 1.09003 * 113.60871 * 25.47905 * 9 7 6 30 30 H 1.09000 * 113.69132 * 254.50331 * 9 7 6 31 31 H 0.96997 * 120.00126 * 297.94364 * 12 10 9 32 32 H 1.09006 * 109.46637 * 279.29735 * 18 17 16 33 33 H 0.96695 * 114.00331 * 56.01813 * 19 18 17 34 34 H 1.48497 * 110.00214 * 58.68285 * 20 18 17 35 35 H 1.48505 * 109.99498 * 180.02562 * 20 18 17 36 36 H 1.08002 * 125.20401 * 180.02562 * 22 21 17 37 37 H 1.08007 * 122.53292 * 179.77411 * 23 22 21 38 38 H 1.08999 * 113.61221 * 105.38955 * 24 7 6 39 39 H 1.08995 * 113.61901 * 334.48484 * 24 7 6 40 40 H 1.08008 * 119.92373 * 179.72302 * 25 6 5 41 41 H 1.08004 * 120.07822 * 180.25592 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.4674 -1.1137 5 6 4.6486 0.4647 -1.1072 6 6 5.3374 0.0004 -0.0007 7 6 6.8445 0.0001 -0.0012 8 1 7.2675 0.5608 -0.8346 9 6 7.4641 0.3598 1.3625 10 6 8.5082 -0.7346 1.0855 11 1 8.7625 -1.3279 1.9638 12 7 9.6883 -0.2509 0.3647 13 16 11.1831 -0.3352 1.0724 14 8 11.0329 0.1769 2.3893 15 8 12.1036 0.1993 0.1309 16 6 11.5829 -2.0426 1.2450 17 6 12.8192 -2.4665 1.5112 18 6 14.0212 -1.5771 1.6989 19 8 13.6407 -0.4105 2.4312 20 14 15.3360 -2.5007 2.6417 21 16 12.8335 -4.2230 1.6030 22 6 11.1067 -4.2840 1.2740 23 6 10.6379 -3.0454 1.1141 24 6 7.4601 -1.3979 0.1764 25 6 4.6490 -0.4685 1.1041 26 6 3.2696 -0.4662 1.1133 27 1 2.7327 0.8298 -1.9782 28 1 5.1921 0.8258 -1.9678 29 1 6.8141 0.1389 2.2092 30 1 7.8846 1.3647 1.4012 31 1 9.5941 0.1188 -0.5271 32 1 14.4114 -1.2833 0.7244 33 1 13.2278 -0.5992 3.2849 34 1 15.7177 -3.7329 1.9060 35 1 16.5266 -1.6340 2.8338 36 1 10.5172 -5.1864 1.2068 37 1 9.5994 -2.8407 0.8990 38 1 7.8774 -1.8111 -0.7419 39 1 6.8092 -2.0985 0.6994 40 1 5.1929 -0.8337 1.9628 41 1 2.7335 -0.8287 1.9780 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15505408_14772022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:24 Heat of formation + Delta-G solvation = 22.577343 kcal Electronic energy + Delta-G solvation = -29026.518817 eV Core-core repulsion = 24900.144960 eV Total energy + Delta-G solvation = -4126.373857 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.52789 -39.81063 -39.67767 -38.01151 -37.73832 -37.33159 -36.63760 -34.48851 -32.31626 -31.95450 -31.79467 -27.65075 -26.94196 -26.88456 -24.58964 -23.99699 -23.51105 -21.76640 -20.89744 -20.26718 -19.98409 -19.45594 -18.41550 -18.05806 -17.34239 -17.11185 -16.94270 -16.67960 -16.54693 -15.95477 -15.79458 -15.58552 -15.47784 -15.14045 -14.97934 -14.81371 -14.56399 -14.43081 -14.29104 -14.15511 -13.97572 -13.77364 -13.72189 -13.52241 -13.24425 -12.97834 -12.89068 -12.86962 -12.79597 -12.70996 -12.42364 -12.15500 -12.00833 -11.97830 -11.63329 -11.43433 -11.00592 -10.70089 -10.23611 -10.16403 -9.87102 -9.80704 -5.24402 -0.69340 -0.57910 -0.35313 0.20489 0.24937 0.56269 0.97554 1.05932 1.41926 1.70380 1.77956 1.87943 1.91428 2.72970 2.76555 2.85691 3.05246 3.18346 3.26568 3.39923 3.41281 3.57452 3.65176 3.74959 3.75536 3.88526 3.93358 4.01770 4.03061 4.16376 4.25519 4.30475 4.42119 4.50331 4.51383 4.62174 4.68884 4.71619 4.74951 4.85072 4.90359 4.98416 5.06577 5.17707 5.20230 5.42143 5.66562 5.79004 6.27292 6.51099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.250 3.750 3 C -0.033 4.033 4 C -0.066 4.066 5 C -0.116 4.116 6 C -0.041 4.041 7 C -0.079 4.079 8 H 0.104 0.896 9 C -0.143 4.143 10 C 0.120 3.880 11 H 0.108 0.892 12 N -1.102 6.102 13 S 2.721 3.279 14 O -0.942 6.942 15 O -0.945 6.945 16 C -0.665 4.665 17 C -0.102 4.102 18 C -0.069 4.069 19 O -0.533 6.533 20 Si 0.676 3.324 21 S 0.161 5.839 22 C -0.209 4.209 23 C -0.090 4.090 24 C -0.141 4.141 25 C -0.119 4.119 26 C -0.066 4.066 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.420 0.580 32 H 0.145 0.855 33 H 0.392 0.608 34 H -0.233 1.233 35 H -0.226 1.226 36 H 0.176 0.824 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -4.810 1.207 5.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.066 4.066 3 C -0.036 4.036 4 C -0.087 4.087 5 C -0.134 4.134 6 C -0.042 4.042 7 C -0.097 4.097 8 H 0.122 0.878 9 C -0.182 4.182 10 C 0.012 3.988 11 H 0.126 0.874 12 N -0.861 5.861 13 S 2.805 3.195 14 O -0.931 6.931 15 O -0.935 6.935 16 C -0.763 4.763 17 C -0.222 4.222 18 C -0.181 4.181 19 O -0.340 6.340 20 Si 0.573 3.427 21 S 0.425 5.575 22 C -0.345 4.345 23 C -0.118 4.118 24 C -0.180 4.180 25 C -0.137 4.137 26 C -0.087 4.087 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.256 0.744 32 H 0.162 0.838 33 H 0.242 0.758 34 H -0.157 1.157 35 H -0.148 1.148 36 H 0.193 0.807 37 H 0.171 0.829 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.153 0.847 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.013 -5.374 1.396 6.317 hybrid contribution -1.399 0.465 -1.445 2.065 sum 1.614 -4.908 -0.049 5.167 Atomic orbital electron populations 1.81312 1.12103 1.08272 1.07163 1.25759 0.92723 0.93992 0.94080 1.16021 0.84316 1.06236 0.97045 1.21219 0.94341 0.96398 0.96741 1.21032 0.93439 1.00356 0.98582 1.19964 0.95184 0.95503 0.93517 1.21706 0.90385 0.98062 0.99587 0.87773 1.23630 0.97253 1.00455 0.96848 1.21741 0.85313 0.96676 0.95103 0.87443 1.55506 1.22626 1.77583 1.30403 1.01507 0.71312 0.72637 0.74025 1.93588 1.85347 1.76022 1.38175 1.93602 1.60281 1.76359 1.63232 1.29920 0.99976 1.27661 1.18716 1.25014 0.97791 0.98998 1.00427 1.25170 0.99236 0.90476 1.03203 1.86590 1.82309 1.28929 1.36221 0.94659 0.79452 0.80130 0.88451 1.84563 1.06532 1.00083 1.66313 1.25914 0.97613 1.02000 1.08930 1.19808 1.00012 0.90609 1.01349 1.23545 0.97294 0.96276 1.00913 1.20972 0.93368 1.00647 0.98703 1.21201 0.94273 0.96478 0.96703 0.84895 0.84861 0.88084 0.89721 0.74443 0.83783 0.75819 1.15710 1.14841 0.80701 0.82886 0.89842 0.88025 0.84652 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -1.96 18.54 41.84 0.78 -1.19 16 2 C 0.25 0.44 15.33 -22.47 -0.34 0.10 16 3 C -0.03 0.03 5.73 -106.93 -0.61 -0.58 16 4 C -0.07 0.15 9.76 -39.17 -0.38 -0.24 16 5 C -0.12 0.37 9.69 -39.64 -0.38 -0.01 16 6 C -0.04 0.15 5.30 -104.53 -0.55 -0.41 16 7 C -0.08 0.37 3.80 -90.81 -0.34 0.02 16 8 H 0.10 -0.54 8.04 -51.93 -0.42 -0.96 16 9 C -0.14 0.57 7.27 -25.78 -0.19 0.39 16 10 C 0.12 -0.49 2.77 -67.12 -0.19 -0.68 16 11 H 0.11 -0.52 7.12 -51.93 -0.37 -0.89 16 12 N -1.10 2.96 5.50 -4.20 -0.02 2.94 16 13 S 2.72 2.63 4.16 -107.50 -0.45 2.18 16 14 O -0.94 -2.78 16.33 -64.90 -1.06 -3.84 16 15 O -0.94 -4.23 17.06 -62.26 -1.06 -5.29 16 16 C -0.66 0.03 5.72 -41.21 -0.24 -0.21 16 17 C -0.10 -0.01 5.71 -36.00 -0.21 -0.22 16 18 C -0.07 -0.03 2.36 36.01 0.08 0.06 16 19 O -0.53 -0.78 9.82 -59.97 -0.59 -1.37 16 20 Si 0.68 -0.97 31.25 -169.99 -5.31 -6.28 16 21 S 0.16 -0.22 20.87 -107.50 -2.24 -2.46 16 22 C -0.21 0.48 11.23 29.04 0.33 0.81 16 23 C -0.09 0.18 9.20 -41.21 -0.38 -0.20 16 24 C -0.14 0.77 6.88 -25.92 -0.18 0.60 16 25 C -0.12 0.44 8.57 -39.64 -0.34 0.10 16 26 C -0.07 0.17 9.76 -39.17 -0.38 -0.22 16 27 H 0.13 -0.43 8.06 -52.49 -0.42 -0.85 16 28 H 0.13 -0.64 8.05 -52.49 -0.42 -1.06 16 29 H 0.10 -0.51 6.33 -51.93 -0.33 -0.84 16 30 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.42 -1.78 8.77 -34.47 -0.30 -2.08 16 32 H 0.15 0.11 7.96 -51.93 -0.41 -0.30 16 33 H 0.39 -0.70 8.23 45.56 0.38 -0.33 16 34 H -0.23 0.07 7.11 56.52 0.40 0.47 16 35 H -0.23 -0.24 7.11 56.52 0.40 0.16 16 36 H 0.18 -0.83 8.06 -52.49 -0.42 -1.25 16 37 H 0.15 -0.70 5.28 -52.48 -0.28 -0.98 16 38 H 0.08 -0.48 8.14 -51.93 -0.42 -0.90 16 39 H 0.10 -0.64 7.71 -51.93 -0.40 -1.05 16 40 H 0.14 -0.77 6.67 -52.48 -0.35 -1.12 16 41 H 0.13 -0.49 8.06 -52.48 -0.42 -0.91 16 LS Contribution 371.43 15.07 5.60 5.60 Total: 0.00 -11.06 371.43 -12.89 -23.95 By element: Atomic # 1 Polarization: -9.33 SS G_CDS: -4.22 Total: -13.55 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -4.30 Total: -0.68 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: 0.75 Total: 1.75 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -2.71 Total: -10.50 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.31 Total: -6.28 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.69 Total: -0.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -11.06 -12.89 -23.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_14772022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.526 kcal (2) G-P(sol) polarization free energy of solvation -11.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds