Wall clock time and date at job start Mon Mar 8 2021 09:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39631 * 120.14861 * 112.72350 * 3 2 1 5 5 C 1.37950 * 119.84760 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.14837 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.84422 * 179.97438 * 6 5 4 8 8 H 1.08993 * 112.84924 * 11.19275 * 7 6 5 9 9 C 1.54050 * 113.69493 * 142.47065 * 7 6 5 10 10 C 1.53775 * 86.98775 * 139.98618 * 9 7 6 11 11 H 1.08996 * 113.61523 * 219.97811 * 10 9 7 12 12 N 1.46497 * 113.61324 * 89.15954 * 10 9 7 13 13 S 1.65604 * 120.00082 * 117.94779 * 12 10 9 14 14 O 1.42098 * 106.39672 * 312.68770 * 13 12 10 15 15 O 1.42099 * 106.40412 * 179.77119 * 13 12 10 16 16 C 1.76200 * 107.21930 * 66.22745 * 13 12 10 17 17 C 1.33383 * 122.53734 * 165.31159 * 16 13 12 18 18 C 1.50704 * 125.20835 * 0.02562 * 17 16 13 19 19 O 1.42898 * 109.46629 * 39.29559 * 18 17 16 20 20 Si 1.86295 * 109.47165 * 159.29631 * 18 17 16 21 21 S 1.75891 * 109.59333 * 180.26666 * 17 16 13 22 22 C 1.75891 * 90.96871 * 359.68462 * 21 17 16 23 23 C 1.33395 * 109.58968 * 0.31481 * 22 21 17 24 24 C 1.53781 * 113.60998 * 240.00028 * 7 6 5 25 25 C 1.38359 * 120.30421 * 0.23861 * 6 5 4 26 26 C 1.37944 * 120.15294 * 359.48375 * 25 6 5 27 27 H 1.08001 * 120.08155 * 0.03801 * 4 3 2 28 28 H 1.08001 * 119.92622 * 180.02562 * 5 4 3 29 29 H 1.09003 * 113.60871 * 25.47905 * 9 7 6 30 30 H 1.09000 * 113.69132 * 254.50331 * 9 7 6 31 31 H 0.96997 * 120.00126 * 297.94364 * 12 10 9 32 32 H 1.09006 * 109.46637 * 279.29735 * 18 17 16 33 33 H 0.96695 * 114.00331 * 56.01813 * 19 18 17 34 34 H 1.48497 * 110.00214 * 58.68285 * 20 18 17 35 35 H 1.48505 * 109.99498 * 180.02562 * 20 18 17 36 36 H 1.08002 * 125.20401 * 180.02562 * 22 21 17 37 37 H 1.08007 * 122.53292 * 179.77411 * 23 22 21 38 38 H 1.08999 * 113.61221 * 105.38955 * 24 7 6 39 39 H 1.08995 * 113.61901 * 334.48484 * 24 7 6 40 40 H 1.08008 * 119.92373 * 179.72302 * 25 6 5 41 41 H 1.08004 * 120.07822 * 180.25592 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.4674 -1.1137 5 6 4.6486 0.4647 -1.1072 6 6 5.3374 0.0004 -0.0007 7 6 6.8445 0.0001 -0.0012 8 1 7.2675 0.5608 -0.8346 9 6 7.4641 0.3598 1.3625 10 6 8.5082 -0.7346 1.0855 11 1 8.7625 -1.3279 1.9638 12 7 9.6883 -0.2509 0.3647 13 16 11.1831 -0.3352 1.0724 14 8 11.0329 0.1769 2.3893 15 8 12.1036 0.1993 0.1309 16 6 11.5829 -2.0426 1.2450 17 6 12.8192 -2.4665 1.5112 18 6 14.0212 -1.5771 1.6989 19 8 13.6407 -0.4105 2.4312 20 14 15.3360 -2.5007 2.6417 21 16 12.8335 -4.2230 1.6030 22 6 11.1067 -4.2840 1.2740 23 6 10.6379 -3.0454 1.1141 24 6 7.4601 -1.3979 0.1764 25 6 4.6490 -0.4685 1.1041 26 6 3.2696 -0.4662 1.1133 27 1 2.7327 0.8298 -1.9782 28 1 5.1921 0.8258 -1.9678 29 1 6.8141 0.1389 2.2092 30 1 7.8846 1.3647 1.4012 31 1 9.5941 0.1188 -0.5271 32 1 14.4114 -1.2833 0.7244 33 1 13.2278 -0.5992 3.2849 34 1 15.7177 -3.7329 1.9060 35 1 16.5266 -1.6340 2.8338 36 1 10.5172 -5.1864 1.2068 37 1 9.5994 -2.8407 0.8990 38 1 7.8774 -1.8111 -0.7419 39 1 6.8092 -2.0985 0.6994 40 1 5.1929 -0.8337 1.9628 41 1 2.7335 -0.8287 1.9780 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15505408_14772022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:23 Heat of formation + Delta-G solvation = 22.120060 kcal Electronic energy + Delta-G solvation = -29026.538646 eV Core-core repulsion = 24900.144960 eV Total energy + Delta-G solvation = -4126.393686 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.21897 -39.69618 -39.49092 -38.16305 -37.71873 -37.43979 -36.78121 -34.30230 -32.06705 -31.81483 -31.62082 -27.57279 -26.63863 -26.54176 -24.49967 -23.72725 -23.28775 -21.66819 -20.70073 -20.12725 -19.80072 -19.39068 -18.42206 -17.94703 -17.14542 -16.98343 -16.82785 -16.54784 -16.44562 -15.92195 -15.55773 -15.54394 -15.30800 -15.12753 -14.80225 -14.66212 -14.34959 -14.28012 -14.18125 -14.09950 -13.86554 -13.77200 -13.52059 -13.38670 -13.16629 -13.06046 -13.01917 -12.79469 -12.74341 -12.69604 -12.15310 -12.12516 -11.73568 -11.65162 -11.53658 -11.08284 -10.97540 -10.44573 -10.12960 -9.89907 -9.72791 -9.59478 -5.15753 -0.70078 -0.49276 -0.18359 0.36521 0.47552 0.68716 1.07669 1.19900 1.48944 1.59684 1.82698 1.92208 2.00904 2.72803 2.88990 2.90538 3.11280 3.32994 3.53588 3.61492 3.76762 3.78203 3.97356 4.03176 4.07071 4.09795 4.12848 4.24059 4.31066 4.35095 4.47221 4.56955 4.69256 4.80837 4.87970 4.91941 4.96688 5.03197 5.12574 5.17808 5.20677 5.24449 5.33357 5.42249 5.55209 5.73266 5.94359 6.07364 6.38330 6.43093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.276 3.724 3 C -0.056 4.056 4 C -0.070 4.070 5 C -0.121 4.121 6 C -0.035 4.035 7 C -0.079 4.079 8 H 0.109 0.891 9 C -0.148 4.148 10 C 0.109 3.891 11 H 0.118 0.882 12 N -1.092 6.092 13 S 2.730 3.270 14 O -0.969 6.969 15 O -0.989 6.989 16 C -0.668 4.668 17 C -0.123 4.123 18 C -0.087 4.087 19 O -0.553 6.553 20 Si 0.755 3.245 21 S 0.168 5.832 22 C -0.202 4.202 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.067 4.067 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.428 0.572 32 H 0.131 0.869 33 H 0.402 0.598 34 H -0.244 1.244 35 H -0.265 1.265 36 H 0.204 0.796 37 H 0.180 0.820 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.159 0.841 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -6.556 1.404 7.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.038 4.038 3 C -0.060 4.060 4 C -0.091 4.091 5 C -0.139 4.139 6 C -0.036 4.036 7 C -0.097 4.097 8 H 0.127 0.873 9 C -0.187 4.187 10 C 0.002 3.998 11 H 0.136 0.864 12 N -0.854 5.854 13 S 2.817 3.183 14 O -0.959 6.959 15 O -0.979 6.979 16 C -0.768 4.768 17 C -0.243 4.243 18 C -0.197 4.197 19 O -0.363 6.363 20 Si 0.654 3.346 21 S 0.432 5.568 22 C -0.338 4.338 23 C -0.124 4.124 24 C -0.169 4.169 25 C -0.136 4.136 26 C -0.087 4.087 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.265 0.735 32 H 0.148 0.852 33 H 0.254 0.746 34 H -0.169 1.169 35 H -0.190 1.190 36 H 0.221 0.779 37 H 0.197 0.803 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.177 0.823 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.964 -7.096 1.585 7.851 hybrid contribution -1.334 1.015 -1.525 2.266 sum 1.630 -6.081 0.060 6.296 Atomic orbital electron populations 1.81317 1.13911 1.10883 1.09317 1.26235 0.93178 0.92121 0.92226 1.16168 0.82795 1.08513 0.98500 1.21339 0.94945 0.96232 0.96554 1.21249 0.93004 1.00222 0.99424 1.20161 0.95784 0.94410 0.93253 1.21756 0.89567 0.98948 0.99454 0.87252 1.23712 0.97522 0.99754 0.97739 1.21988 0.84800 0.97150 0.95864 0.86437 1.55194 1.21801 1.77642 1.30754 1.00807 0.71501 0.72874 0.73087 1.93547 1.85866 1.77066 1.39380 1.93542 1.62394 1.77794 1.64185 1.29836 1.00604 1.27257 1.19140 1.25047 0.97738 1.00024 1.01532 1.25429 1.00541 0.90626 1.03123 1.86552 1.82610 1.30000 1.37092 0.93740 0.76229 0.77788 0.86861 1.84525 1.07867 0.98474 1.65940 1.26302 0.96908 1.02934 1.07650 1.20071 1.00882 0.90145 1.01330 1.23554 0.96440 0.95880 1.01027 1.21228 0.92842 1.00096 0.99401 1.21371 0.94942 0.95999 0.96401 0.84500 0.83335 0.86799 0.91153 0.73502 0.85238 0.74610 1.16870 1.19002 0.77909 0.80311 0.89022 0.86339 0.82327 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.39 18.54 19.00 0.35 -5.04 16 2 C 0.28 1.28 15.33 88.33 1.35 2.63 16 3 C -0.06 0.12 5.73 -21.36 -0.12 0.00 16 4 C -0.07 0.34 9.76 22.54 0.22 0.56 16 5 C -0.12 0.94 9.69 22.23 0.22 1.16 16 6 C -0.04 0.32 5.30 -19.80 -0.10 0.22 16 7 C -0.08 0.90 3.80 -10.92 -0.04 0.86 16 8 H 0.11 -1.34 8.04 -2.39 -0.02 -1.36 16 9 C -0.15 1.43 7.27 31.21 0.23 1.66 16 10 C 0.11 -1.10 2.77 45.52 0.13 -0.98 16 11 H 0.12 -1.40 7.12 -2.39 -0.02 -1.42 16 12 N -1.09 6.54 5.50 -167.20 -0.92 5.62 16 13 S 2.73 7.12 4.16 -56.49 -0.24 6.89 16 14 O -0.97 -6.63 16.33 -120.61 -1.97 -8.60 16 15 O -0.99 -10.63 17.06 -123.14 -2.10 -12.73 16 16 C -0.67 0.21 5.72 21.21 0.12 0.33 16 17 C -0.12 -0.07 5.71 24.59 0.14 0.07 16 18 C -0.09 -0.19 2.36 71.24 0.17 -0.03 16 19 O -0.55 -2.65 9.82 -125.33 -1.23 -3.88 16 20 Si 0.75 -1.59 31.25 68.60 2.14 0.55 16 21 S 0.17 -0.62 20.87 -56.49 -1.18 -1.80 16 22 C -0.20 1.41 11.23 66.72 0.75 2.16 16 23 C -0.10 0.57 9.20 21.22 0.20 0.77 16 24 C -0.13 1.81 6.88 31.12 0.21 2.02 16 25 C -0.12 1.12 8.57 22.23 0.19 1.31 16 26 C -0.07 0.40 9.76 22.54 0.22 0.62 16 27 H 0.14 -0.86 8.06 -2.91 -0.02 -0.89 16 28 H 0.15 -1.66 8.05 -2.91 -0.02 -1.68 16 29 H 0.11 -1.41 6.33 -2.39 -0.02 -1.42 16 30 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.43 -3.83 8.77 -96.75 -0.85 -4.68 16 32 H 0.13 0.53 7.96 -2.38 -0.02 0.51 16 33 H 0.40 -0.77 8.23 -74.06 -0.61 -1.38 16 34 H -0.24 0.14 7.11 99.48 0.71 0.85 16 35 H -0.26 -1.04 7.11 99.48 0.71 -0.33 16 36 H 0.20 -2.64 8.06 -2.91 -0.02 -2.67 16 37 H 0.18 -2.16 5.28 -2.91 -0.02 -2.17 16 38 H 0.09 -1.34 8.14 -2.39 -0.02 -1.36 16 39 H 0.12 -1.97 7.71 -2.39 -0.02 -1.99 16 40 H 0.16 -2.29 6.67 -2.91 -0.02 -2.31 16 41 H 0.14 -1.17 8.06 -2.91 -0.02 -1.19 16 Total: 0.00 -28.02 371.43 -1.57 -29.59 By element: Atomic # 1 Polarization: -23.67 SS G_CDS: -0.30 Total: -23.97 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 3.87 Total: 13.36 kcal Atomic # 7 Polarization: 1.14 SS G_CDS: -0.57 Total: 0.58 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -5.30 Total: -25.20 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: 2.14 Total: 0.55 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.41 Total: 5.09 kcal Total: -28.02 -1.57 -29.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_14772022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.711 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds