Wall clock time and date at job start Mon Mar 8 2021 09:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39640 * 120.15071 * 309.13878 * 3 2 1 5 5 C 1.37954 * 119.84329 * 180.27646 * 4 3 2 6 6 C 1.38357 * 120.15146 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.84541 * 179.97438 * 6 5 4 8 8 H 1.09001 * 112.84799 * 168.83130 * 7 6 5 9 9 C 1.53791 * 113.61382 * 300.02261 * 7 6 5 10 10 C 1.53780 * 87.08013 * 139.98250 * 9 7 6 11 11 H 1.08999 * 113.61439 * 219.93952 * 10 9 7 12 12 N 1.46503 * 113.61514 * 89.11242 * 10 9 7 13 13 S 1.65604 * 119.99393 * 144.99827 * 12 10 9 14 14 O 1.42103 * 106.39605 * 178.54479 * 13 12 10 15 15 O 1.42093 * 106.40686 * 311.46131 * 13 12 10 16 16 C 1.76197 * 107.21889 * 65.00776 * 13 12 10 17 17 C 1.33392 * 122.54155 * 90.01719 * 16 13 12 18 18 S 1.75879 * 109.59156 * 180.02562 * 17 16 13 19 19 C 1.75887 * 90.97394 * 0.02562 * 18 17 16 20 20 C 1.50694 * 125.20145 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46906 * 119.97527 * 20 19 18 22 22 Si 1.86302 * 109.47573 * 359.97438 * 20 19 18 23 23 C 1.33393 * 109.58911 * 359.73024 * 19 18 17 24 24 C 1.53783 * 113.61555 * 37.51951 * 7 6 5 25 25 C 1.38364 * 120.30691 * 0.02562 * 6 5 4 26 26 C 1.37940 * 120.15319 * 359.97438 * 25 6 5 27 27 H 1.07994 * 120.07925 * 0.29781 * 4 3 2 28 28 H 1.07996 * 119.91672 * 179.97438 * 5 4 3 29 29 H 1.08997 * 113.61319 * 254.53103 * 9 7 6 30 30 H 1.08997 * 113.60959 * 25.43482 * 9 7 6 31 31 H 0.96994 * 119.99930 * 325.00175 * 12 10 9 32 32 H 1.07999 * 125.20219 * 359.97438 * 17 16 13 33 33 H 1.08998 * 109.47220 * 239.96936 * 20 19 18 34 34 H 0.96694 * 114.00192 * 299.99669 * 21 20 19 35 35 H 1.48502 * 109.99751 * 180.02562 * 22 20 19 36 36 H 1.48504 * 109.99502 * 301.31582 * 22 20 19 37 37 H 1.07996 * 122.53445 * 180.24133 * 23 19 18 38 38 H 1.08995 * 113.61394 * 334.57012 * 24 7 6 39 39 H 1.08995 * 113.60816 * 105.47169 * 24 7 6 40 40 H 1.08004 * 119.92467 * 179.97438 * 25 6 5 41 41 H 1.07998 * 120.07857 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.7612 0.9365 5 6 4.6492 -0.7514 0.9344 6 6 5.3373 0.0104 0.0070 7 6 6.8443 0.0164 0.0113 8 1 7.2682 0.4908 -0.8738 9 6 7.4546 0.5179 1.3309 10 6 8.5058 -0.5938 1.1758 11 1 8.7582 -1.0899 2.1130 12 7 9.6874 -0.1820 0.4139 13 16 11.1804 -0.7743 0.8172 14 8 12.0972 -0.2207 -0.1168 15 8 11.3101 -0.6124 2.2229 16 6 11.1513 -2.5102 0.5167 17 6 11.4941 -3.0409 -0.6581 18 16 11.3409 -4.7914 -0.5817 19 6 10.8033 -4.7014 1.0906 20 6 10.4364 -5.8836 1.9499 21 8 11.2914 -5.9243 3.0943 22 14 10.6397 -7.4530 0.9668 23 6 10.7752 -3.4269 1.4833 24 6 7.4649 -1.3527 0.3358 25 6 4.6483 0.7676 -0.9238 26 6 3.2690 0.7672 -0.9331 27 1 2.7337 -1.3569 1.6605 28 1 5.1931 -1.3399 1.6585 29 1 7.8697 1.5236 1.2656 30 1 6.8011 0.3837 2.1928 31 1 9.5952 0.4376 -0.3267 32 1 11.8156 -2.4813 -1.5240 33 1 9.4000 -5.7896 2.2740 34 1 12.2308 -6.0075 2.8806 35 1 10.2803 -8.6263 1.8031 36 1 9.7794 -7.4095 -0.2429 37 1 10.4781 -3.1323 2.4790 38 1 6.8143 -1.9981 0.9258 39 1 7.8884 -1.8569 -0.5328 40 1 5.1918 1.3604 -1.6448 41 1 2.7324 1.3590 -1.6599 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15505408_15065232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:28 Heat of formation + Delta-G solvation = 18.731577 kcal Electronic energy + Delta-G solvation = -28621.881404 eV Core-core repulsion = 24495.340782 eV Total energy + Delta-G solvation = -4126.540622 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.53451 -39.74200 -39.54680 -38.26826 -37.61394 -37.36192 -36.90754 -34.50199 -32.33784 -31.91373 -31.88663 -27.32986 -26.96185 -26.84725 -24.99678 -24.02015 -23.54729 -21.50776 -20.86752 -20.24045 -20.00189 -19.32384 -18.70630 -17.92368 -17.69750 -17.30419 -17.06083 -16.69391 -16.43190 -16.01319 -15.81952 -15.50747 -15.28078 -15.07639 -14.93418 -14.85272 -14.59619 -14.44175 -14.33094 -14.19414 -13.99437 -13.79712 -13.73851 -13.57622 -13.28698 -13.19003 -13.09193 -12.96521 -12.90973 -12.56540 -12.44406 -12.27819 -12.03115 -12.01017 -11.67676 -11.45832 -10.83817 -10.67616 -10.25130 -10.18691 -9.94682 -9.82765 -5.30514 -0.82695 -0.54953 -0.37360 0.18199 0.23359 0.50295 0.90807 1.08016 1.42914 1.68546 1.75400 1.86110 1.93150 2.66529 2.74469 2.83740 3.12188 3.20332 3.29290 3.39921 3.41689 3.53711 3.63408 3.72736 3.73168 3.75025 3.91839 3.98033 4.13829 4.15487 4.26249 4.27809 4.42604 4.50840 4.55313 4.59800 4.69234 4.73952 4.80739 4.81966 4.84808 4.98981 5.04363 5.15567 5.18163 5.39781 5.64287 5.75318 6.34594 6.49251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.250 3.750 3 C -0.033 4.033 4 C -0.066 4.066 5 C -0.119 4.119 6 C -0.041 4.041 7 C -0.079 4.079 8 H 0.104 0.896 9 C -0.132 4.132 10 C 0.123 3.877 11 H 0.110 0.890 12 N -1.096 6.096 13 S 2.711 3.289 14 O -0.954 6.954 15 O -0.946 6.946 16 C -0.686 4.686 17 C -0.082 4.082 18 S 0.158 5.842 19 C -0.228 4.228 20 C -0.026 4.026 21 O -0.532 6.532 22 Si 0.653 3.347 23 C -0.043 4.043 24 C -0.148 4.148 25 C -0.116 4.116 26 C -0.066 4.066 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.420 0.580 32 H 0.185 0.815 33 H 0.126 0.874 34 H 0.382 0.618 35 H -0.231 1.231 36 H -0.237 1.237 37 H 0.157 0.843 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -2.242 -2.728 5.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.066 4.066 3 C -0.036 4.036 4 C -0.087 4.087 5 C -0.137 4.137 6 C -0.042 4.042 7 C -0.097 4.097 8 H 0.122 0.878 9 C -0.171 4.171 10 C 0.015 3.985 11 H 0.128 0.872 12 N -0.855 5.855 13 S 2.797 3.203 14 O -0.944 6.944 15 O -0.936 6.936 16 C -0.786 4.786 17 C -0.221 4.221 18 S 0.422 5.578 19 C -0.346 4.346 20 C -0.139 4.139 21 O -0.338 6.338 22 Si 0.552 3.448 23 C -0.072 4.072 24 C -0.187 4.187 25 C -0.134 4.134 26 C -0.087 4.087 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.255 0.745 32 H 0.203 0.797 33 H 0.143 0.857 34 H 0.230 0.770 35 H -0.154 1.154 36 H -0.161 1.161 37 H 0.174 0.826 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.884 -3.791 -3.292 5.363 hybrid contribution -0.531 1.223 0.414 1.396 sum 1.353 -2.568 -2.879 4.088 Atomic orbital electron populations 1.81311 1.12094 1.07853 1.07540 1.25754 0.92720 0.94040 0.94065 1.16022 0.84327 1.02936 1.00319 1.21203 0.94272 0.96601 0.96591 1.20966 0.93373 0.99953 0.99423 1.19967 0.95222 0.94787 0.94193 1.21675 0.90380 0.98229 0.99464 0.87813 1.23420 0.96881 0.99416 0.97399 1.21690 0.84966 0.97167 0.94657 0.87212 1.55365 1.23711 1.59906 1.46515 1.01598 0.71992 0.72786 0.73886 1.93624 1.59801 1.76723 1.64272 1.93621 1.84737 1.84868 1.30337 1.30022 1.19682 1.27749 1.01134 1.25900 0.97395 0.98650 1.00192 1.84433 1.60990 1.03606 1.08790 1.25070 1.11515 0.99629 0.98379 1.24427 0.97143 1.01342 0.91005 1.86543 1.21203 1.96342 1.29701 0.95001 0.91260 0.78032 0.80502 1.19597 0.97781 0.90339 0.99493 1.23643 0.97812 0.96113 1.01175 1.21025 0.93437 0.99709 0.99238 1.21219 0.94346 0.96477 0.96645 0.84869 0.84736 0.89801 0.88099 0.74455 0.79746 0.85695 0.77005 1.15388 1.16120 0.82563 0.88277 0.90185 0.84856 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -1.99 18.54 41.84 0.78 -1.22 16 2 C 0.25 0.46 15.33 -22.48 -0.34 0.12 16 3 C -0.03 0.03 5.73 -106.93 -0.61 -0.58 16 4 C -0.07 0.15 9.76 -39.16 -0.38 -0.23 16 5 C -0.12 0.42 8.58 -39.64 -0.34 0.08 16 6 C -0.04 0.15 5.30 -104.53 -0.55 -0.41 16 7 C -0.08 0.38 3.80 -90.95 -0.35 0.03 16 8 H 0.10 -0.58 8.05 -51.93 -0.42 -1.00 16 9 C -0.13 0.60 7.33 -25.91 -0.19 0.41 16 10 C 0.12 -0.51 4.51 -67.11 -0.30 -0.81 16 11 H 0.11 -0.46 7.77 -51.93 -0.40 -0.86 16 12 N -1.10 3.90 5.73 -4.19 -0.02 3.88 16 13 S 2.71 -1.11 5.77 -107.50 -0.62 -1.73 16 14 O -0.95 -2.26 17.64 -57.17 -1.01 -3.27 16 15 O -0.95 -2.71 17.15 -57.17 -0.98 -3.69 16 16 C -0.69 0.83 5.86 -41.21 -0.24 0.59 16 17 C -0.08 0.17 10.70 29.04 0.31 0.48 16 18 S 0.16 -0.37 20.58 -107.50 -2.21 -2.59 16 19 C -0.23 0.37 5.72 -36.00 -0.21 0.16 16 20 C -0.03 0.05 2.96 36.00 0.11 0.16 16 21 O -0.53 0.58 12.86 -35.23 -0.45 0.12 16 22 Si 0.65 -1.53 30.97 -169.99 -5.26 -6.79 16 23 C -0.04 0.04 9.56 -41.21 -0.39 -0.35 16 24 C -0.15 0.72 7.25 -25.91 -0.19 0.54 16 25 C -0.12 0.38 9.69 -39.64 -0.38 -0.01 16 26 C -0.07 0.15 9.76 -39.17 -0.38 -0.24 16 27 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 28 H 0.13 -0.72 6.64 -52.49 -0.35 -1.07 16 29 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 30 H 0.10 -0.49 7.72 -51.93 -0.40 -0.89 16 31 H 0.42 -2.23 8.78 -34.48 -0.30 -2.53 16 32 H 0.19 -0.71 8.00 -52.49 -0.42 -1.13 16 33 H 0.13 -0.28 7.96 -51.93 -0.41 -0.69 16 34 H 0.38 -1.77 8.70 45.56 0.40 -1.38 16 35 H -0.23 -0.12 7.11 56.52 0.40 0.28 16 36 H -0.24 0.12 7.11 56.52 0.40 0.52 16 37 H 0.16 -0.19 7.96 -52.49 -0.42 -0.60 16 38 H 0.10 -0.55 6.30 -51.93 -0.33 -0.88 16 39 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 40 H 0.13 -0.65 8.05 -52.48 -0.42 -1.07 16 41 H 0.13 -0.43 8.06 -52.49 -0.42 -0.86 16 LS Contribution 383.61 15.07 5.78 5.78 Total: 0.00 -11.38 383.61 -12.82 -24.20 By element: Atomic # 1 Polarization: -10.25 SS G_CDS: -4.37 Total: -14.62 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.45 Total: -0.07 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: 0.75 Total: 2.66 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -2.44 Total: -6.83 kcal Atomic # 14 Polarization: -1.53 SS G_CDS: -5.26 Total: -6.79 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.83 Total: -4.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -11.38 -12.82 -24.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_15065232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.929 kcal (2) G-P(sol) polarization free energy of solvation -11.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds