Wall clock time and date at job start Mon Mar 8 2021 09:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39640 * 120.15071 * 309.13878 * 3 2 1 5 5 C 1.37954 * 119.84329 * 180.27646 * 4 3 2 6 6 C 1.38357 * 120.15146 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.84541 * 179.97438 * 6 5 4 8 8 H 1.09001 * 112.84799 * 168.83130 * 7 6 5 9 9 C 1.53791 * 113.61382 * 300.02261 * 7 6 5 10 10 C 1.53780 * 87.08013 * 139.98250 * 9 7 6 11 11 H 1.08999 * 113.61439 * 219.93952 * 10 9 7 12 12 N 1.46503 * 113.61514 * 89.11242 * 10 9 7 13 13 S 1.65604 * 119.99393 * 144.99827 * 12 10 9 14 14 O 1.42103 * 106.39605 * 178.54479 * 13 12 10 15 15 O 1.42093 * 106.40686 * 311.46131 * 13 12 10 16 16 C 1.76197 * 107.21889 * 65.00776 * 13 12 10 17 17 C 1.33392 * 122.54155 * 90.01719 * 16 13 12 18 18 S 1.75879 * 109.59156 * 180.02562 * 17 16 13 19 19 C 1.75887 * 90.97394 * 0.02562 * 18 17 16 20 20 C 1.50694 * 125.20145 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46906 * 119.97527 * 20 19 18 22 22 Si 1.86302 * 109.47573 * 359.97438 * 20 19 18 23 23 C 1.33393 * 109.58911 * 359.73024 * 19 18 17 24 24 C 1.53783 * 113.61555 * 37.51951 * 7 6 5 25 25 C 1.38364 * 120.30691 * 0.02562 * 6 5 4 26 26 C 1.37940 * 120.15319 * 359.97438 * 25 6 5 27 27 H 1.07994 * 120.07925 * 0.29781 * 4 3 2 28 28 H 1.07996 * 119.91672 * 179.97438 * 5 4 3 29 29 H 1.08997 * 113.61319 * 254.53103 * 9 7 6 30 30 H 1.08997 * 113.60959 * 25.43482 * 9 7 6 31 31 H 0.96994 * 119.99930 * 325.00175 * 12 10 9 32 32 H 1.07999 * 125.20219 * 359.97438 * 17 16 13 33 33 H 1.08998 * 109.47220 * 239.96936 * 20 19 18 34 34 H 0.96694 * 114.00192 * 299.99669 * 21 20 19 35 35 H 1.48502 * 109.99751 * 180.02562 * 22 20 19 36 36 H 1.48504 * 109.99502 * 301.31582 * 22 20 19 37 37 H 1.07996 * 122.53445 * 180.24133 * 23 19 18 38 38 H 1.08995 * 113.61394 * 334.57012 * 24 7 6 39 39 H 1.08995 * 113.60816 * 105.47169 * 24 7 6 40 40 H 1.08004 * 119.92467 * 179.97438 * 25 6 5 41 41 H 1.07998 * 120.07857 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.7612 0.9365 5 6 4.6492 -0.7514 0.9344 6 6 5.3373 0.0104 0.0070 7 6 6.8443 0.0164 0.0113 8 1 7.2682 0.4908 -0.8738 9 6 7.4546 0.5179 1.3309 10 6 8.5058 -0.5938 1.1758 11 1 8.7582 -1.0899 2.1130 12 7 9.6874 -0.1820 0.4139 13 16 11.1804 -0.7743 0.8172 14 8 12.0972 -0.2207 -0.1168 15 8 11.3101 -0.6124 2.2229 16 6 11.1513 -2.5102 0.5167 17 6 11.4941 -3.0409 -0.6581 18 16 11.3409 -4.7914 -0.5817 19 6 10.8033 -4.7014 1.0906 20 6 10.4364 -5.8836 1.9499 21 8 11.2914 -5.9243 3.0943 22 14 10.6397 -7.4530 0.9668 23 6 10.7752 -3.4269 1.4833 24 6 7.4649 -1.3527 0.3358 25 6 4.6483 0.7676 -0.9238 26 6 3.2690 0.7672 -0.9331 27 1 2.7337 -1.3569 1.6605 28 1 5.1931 -1.3399 1.6585 29 1 7.8697 1.5236 1.2656 30 1 6.8011 0.3837 2.1928 31 1 9.5952 0.4376 -0.3267 32 1 11.8156 -2.4813 -1.5240 33 1 9.4000 -5.7896 2.2740 34 1 12.2308 -6.0075 2.8806 35 1 10.2803 -8.6263 1.8031 36 1 9.7794 -7.4095 -0.2429 37 1 10.4781 -3.1323 2.4790 38 1 6.8143 -1.9981 0.9258 39 1 7.8884 -1.8569 -0.5328 40 1 5.1918 1.3604 -1.6448 41 1 2.7324 1.3590 -1.6599 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15505408_15065232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:27 Heat of formation + Delta-G solvation = 17.183894 kcal Electronic energy + Delta-G solvation = -28621.948516 eV Core-core repulsion = 24495.340782 eV Total energy + Delta-G solvation = -4126.607734 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.23439 -39.53526 -39.38970 -38.33558 -37.50359 -37.46351 -36.98453 -34.28445 -32.09553 -31.76037 -31.68432 -27.17549 -26.64858 -26.53454 -24.86756 -23.76391 -23.32037 -21.38467 -20.63600 -20.07412 -19.81426 -19.17030 -18.63403 -17.78724 -17.57908 -17.04862 -16.84569 -16.49075 -16.28262 -15.92015 -15.59227 -15.39318 -15.18081 -14.98956 -14.78874 -14.70644 -14.37339 -14.26791 -14.20321 -14.05751 -13.87764 -13.80523 -13.59738 -13.41137 -13.28354 -13.18069 -13.08232 -12.88449 -12.77711 -12.52570 -12.17311 -12.15360 -11.75210 -11.68387 -11.54258 -11.11844 -10.67303 -10.41140 -10.09582 -9.93530 -9.77799 -9.62838 -5.14086 -0.74292 -0.40830 -0.21726 0.39710 0.43916 0.65545 1.02866 1.23584 1.56019 1.56609 1.87618 1.89063 2.08690 2.73844 2.85831 2.87081 3.24704 3.46560 3.56573 3.69322 3.74128 3.76178 3.95440 3.96897 3.99627 4.06746 4.18607 4.30999 4.33847 4.43293 4.43553 4.53346 4.70202 4.80073 4.84292 4.92470 4.96643 5.00871 5.09819 5.11939 5.17955 5.19506 5.29858 5.38559 5.52004 5.70558 5.90882 6.10632 6.39961 6.66709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.276 3.724 3 C -0.056 4.056 4 C -0.068 4.068 5 C -0.120 4.120 6 C -0.036 4.036 7 C -0.076 4.076 8 H 0.115 0.885 9 C -0.132 4.132 10 C 0.115 3.885 11 H 0.109 0.891 12 N -1.085 6.085 13 S 2.729 3.271 14 O -0.985 6.985 15 O -0.983 6.983 16 C -0.690 4.690 17 C -0.084 4.084 18 S 0.181 5.819 19 C -0.233 4.233 20 C -0.028 4.028 21 O -0.549 6.549 22 Si 0.720 3.280 23 C -0.053 4.053 24 C -0.144 4.144 25 C -0.119 4.119 26 C -0.069 4.069 27 H 0.140 0.860 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.430 0.570 32 H 0.202 0.798 33 H 0.128 0.872 34 H 0.396 0.604 35 H -0.273 1.273 36 H -0.258 1.258 37 H 0.154 0.846 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.152 0.848 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -2.423 -3.418 6.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.038 4.038 3 C -0.059 4.059 4 C -0.089 4.089 5 C -0.138 4.138 6 C -0.037 4.037 7 C -0.094 4.094 8 H 0.134 0.866 9 C -0.171 4.171 10 C 0.008 3.992 11 H 0.127 0.873 12 N -0.846 5.846 13 S 2.817 3.183 14 O -0.975 6.975 15 O -0.973 6.973 16 C -0.791 4.791 17 C -0.223 4.223 18 S 0.445 5.555 19 C -0.350 4.350 20 C -0.141 4.141 21 O -0.357 6.357 22 Si 0.623 3.377 23 C -0.082 4.082 24 C -0.183 4.183 25 C -0.137 4.137 26 C -0.090 4.090 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.267 0.733 32 H 0.219 0.781 33 H 0.145 0.855 34 H 0.246 0.754 35 H -0.199 1.199 36 H -0.183 1.183 37 H 0.171 0.829 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.021 -3.935 -3.988 6.365 hybrid contribution -0.811 1.223 0.631 1.597 sum 2.210 -2.712 -3.357 4.849 Atomic orbital electron populations 1.81315 1.13881 1.10285 1.09843 1.26226 0.93172 0.92188 0.92218 1.16165 0.82820 1.04904 1.02054 1.21353 0.94924 0.96294 0.96298 1.21203 0.92877 0.99951 0.99744 1.20179 0.95921 0.93965 0.93601 1.21721 0.89444 0.98396 0.99814 0.86646 1.23451 0.96670 0.99172 0.97797 1.21834 0.84752 0.97797 0.94861 0.87316 1.55044 1.22827 1.59886 1.46879 1.00726 0.72143 0.72826 0.72595 1.93577 1.61559 1.77657 1.64724 1.93573 1.85615 1.85644 1.32490 1.29799 1.20803 1.26906 1.01592 1.26187 0.96565 0.99133 1.00440 1.84368 1.60285 1.03070 1.07798 1.25129 1.11459 0.99454 0.98992 1.24521 0.97266 1.01450 0.90900 1.86508 1.22512 1.96350 1.30372 0.94184 0.90181 0.75334 0.77995 1.19638 0.98282 0.90681 0.99557 1.23653 0.97393 0.96110 1.01144 1.21262 0.92976 0.99803 0.99652 1.21358 0.94984 0.96230 0.96413 0.84215 0.82777 0.89903 0.87537 0.73263 0.78105 0.85538 0.75363 1.19859 1.18340 0.82868 0.87384 0.89992 0.83033 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.54 18.54 19.00 0.35 -5.19 16 2 C 0.28 1.39 15.33 88.33 1.35 2.74 16 3 C -0.06 0.09 5.73 -21.36 -0.12 -0.03 16 4 C -0.07 0.35 9.76 22.54 0.22 0.57 16 5 C -0.12 1.01 8.58 22.23 0.19 1.20 16 6 C -0.04 0.31 5.30 -19.81 -0.10 0.21 16 7 C -0.08 0.87 3.80 -11.01 -0.04 0.83 16 8 H 0.12 -1.56 8.05 -2.39 -0.02 -1.58 16 9 C -0.13 1.37 7.33 31.12 0.23 1.60 16 10 C 0.12 -1.06 4.51 45.52 0.21 -0.86 16 11 H 0.11 -0.95 7.77 -2.39 -0.02 -0.97 16 12 N -1.08 8.42 5.73 -167.18 -0.96 7.46 16 13 S 2.73 -1.81 5.77 -56.49 -0.33 -2.13 16 14 O -0.98 -4.88 17.64 -128.00 -2.26 -7.14 16 15 O -0.98 -6.37 17.15 -128.00 -2.20 -8.57 16 16 C -0.69 1.93 5.86 21.22 0.12 2.05 16 17 C -0.08 0.43 10.70 66.72 0.71 1.14 16 18 S 0.18 -1.06 20.58 -56.49 -1.16 -2.23 16 19 C -0.23 0.89 5.72 24.59 0.14 1.03 16 20 C -0.03 0.12 2.96 71.23 0.21 0.33 16 21 O -0.55 1.31 12.86 -148.98 -1.92 -0.60 16 22 Si 0.72 -3.49 30.97 68.60 2.12 -1.37 16 23 C -0.05 0.12 9.56 21.22 0.20 0.32 16 24 C -0.14 1.66 7.25 31.12 0.23 1.88 16 25 C -0.12 0.94 9.69 22.23 0.22 1.15 16 26 C -0.07 0.33 9.76 22.54 0.22 0.55 16 27 H 0.14 -0.98 8.06 -2.91 -0.02 -1.00 16 28 H 0.15 -1.96 6.64 -2.91 -0.02 -1.97 16 29 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H 0.11 -1.20 7.72 -2.39 -0.02 -1.22 16 31 H 0.43 -4.98 8.78 -96.75 -0.85 -5.83 16 32 H 0.20 -1.81 8.00 -2.91 -0.02 -1.84 16 33 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 34 H 0.40 -3.84 8.70 -74.06 -0.64 -4.48 16 35 H -0.27 -0.56 7.11 99.48 0.71 0.14 16 36 H -0.26 0.37 7.11 99.48 0.71 1.08 16 37 H 0.15 -0.31 7.96 -2.91 -0.02 -0.33 16 38 H 0.11 -1.42 6.30 -2.39 -0.02 -1.43 16 39 H 0.08 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.15 -1.79 8.05 -2.91 -0.02 -1.81 16 41 H 0.14 -0.90 8.06 -2.91 -0.02 -0.92 16 Total: 0.00 -26.91 383.61 -2.70 -29.61 By element: Atomic # 1 Polarization: -24.22 SS G_CDS: -0.35 Total: -24.56 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 3.98 Total: 14.72 kcal Atomic # 7 Polarization: 2.88 SS G_CDS: -0.61 Total: 2.27 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -6.37 Total: -16.31 kcal Atomic # 14 Polarization: -3.49 SS G_CDS: 2.12 Total: -1.37 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -1.49 Total: -4.36 kcal Total: -26.91 -2.70 -29.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_15065232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.798 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds