Wall clock time and date at job start Mon Mar 8 2021 09:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33395 * 125.20301 * 2 1 4 4 C 1.50708 * 122.53902 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47127 * 52.71755 * 4 3 2 6 6 Si 1.86297 * 109.46919 * 292.71927 * 4 3 2 7 7 C 1.38417 * 114.92021 * 180.21034 * 3 2 1 8 8 S 1.76199 * 122.54148 * 179.76114 * 7 3 2 9 9 O 1.42102 * 106.40537 * 164.18003 * 8 7 3 10 10 O 1.42104 * 106.40027 * 31.25873 * 8 7 3 11 11 N 1.65600 * 107.22011 * 277.72551 * 8 7 3 12 12 C 1.46500 * 120.00261 * 64.99169 * 11 8 7 13 13 H 1.09001 * 112.85044 * 13.81223 * 12 11 8 14 14 C 1.53778 * 113.61023 * 145.00159 * 12 11 8 15 15 C 1.53777 * 87.07967 * 89.20556 * 14 12 11 16 16 H 1.09001 * 113.61715 * 270.87795 * 15 14 12 17 17 C 1.50701 * 113.61630 * 140.06408 * 15 14 12 18 18 C 1.38366 * 119.84896 * 301.25191 * 17 15 14 19 19 C 1.37937 * 120.15563 * 179.76660 * 18 17 15 20 20 C 1.39642 * 119.84684 * 0.48451 * 19 18 17 21 21 C 1.43193 * 120.15483 * 179.78807 * 20 19 18 22 22 N 9.25641 * 135.64094 * 93.73647 * 6 1 2 23 23 C 1.39636 * 119.69437 * 359.77077 * 20 19 18 24 24 C 1.37942 * 119.84773 * 359.97438 * 23 20 19 25 25 C 1.53772 * 113.69321 * 242.53804 * 12 11 8 26 26 C 1.33384 * 114.92222 * 359.49568 * 7 3 2 27 27 C 1.50703 * 125.20524 * 180.24954 * 26 7 3 28 28 S 1.75883 * 125.20313 * 179.69500 * 2 1 3 29 29 H 1.08997 * 109.47049 * 174.58156 * 1 2 3 30 30 H 1.09004 * 109.46747 * 294.57772 * 1 2 3 31 31 H 1.09000 * 109.47157 * 54.57134 * 1 2 3 32 32 H 1.09001 * 109.46676 * 172.72338 * 4 3 2 33 33 H 0.96692 * 114.00269 * 291.97012 * 5 4 3 34 34 H 1.48502 * 110.00038 * 71.30816 * 6 4 3 35 35 H 1.48499 * 109.99997 * 192.62493 * 6 4 3 36 36 H 0.96998 * 119.99992 * 245.00219 * 11 8 7 37 37 H 1.08995 * 113.62381 * 334.65440 * 14 12 11 38 38 H 1.09001 * 113.61213 * 203.74921 * 14 12 11 39 39 H 1.07996 * 119.91805 * 359.97438 * 18 17 15 40 40 H 1.07996 * 120.08431 * 180.25648 * 19 18 17 41 41 H 1.07995 * 120.07313 * 179.97438 * 23 20 19 42 42 H 1.08005 * 119.92494 * 179.97438 * 24 23 20 43 43 H 1.09000 * 113.61646 * 156.32440 * 25 12 11 44 44 H 1.09001 * 113.61474 * 25.42777 * 25 12 11 45 45 H 1.08995 * 109.47606 * 90.00039 * 27 26 7 46 46 H 1.09007 * 109.46989 * 209.99784 * 27 26 7 47 47 H 1.09004 * 109.46934 * 329.99445 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7051 2.4848 -0.0006 5 8 0.7690 2.6168 1.0710 6 14 0.8427 2.8021 -1.6211 7 6 3.6379 0.8429 -0.0046 8 16 4.8356 2.1352 -0.0117 9 8 6.0717 1.5388 0.3565 10 8 4.2563 3.2230 0.6957 11 7 5.0070 2.6362 -1.5807 12 6 3.8833 3.2711 -2.2739 13 1 3.0841 3.5726 -1.5968 14 6 4.3097 4.3763 -3.2545 15 6 4.4152 3.2771 -4.3247 16 1 5.3968 2.8054 -4.3708 17 6 3.9059 3.7013 -5.6781 18 6 2.5963 4.1250 -5.8192 19 6 2.1248 4.5193 -7.0541 20 6 2.9695 4.4804 -8.1653 21 6 2.4856 4.8838 -9.4512 22 7 2.1018 5.2038 -10.4714 23 6 4.2885 4.0467 -8.0167 24 6 4.7483 3.6603 -6.7749 25 6 3.3887 2.4840 -3.4989 26 6 3.9751 -0.4476 0.0023 27 6 5.3860 -0.9770 0.0047 28 16 2.5209 -1.4371 0.0077 29 1 -0.3633 -1.0230 -0.0970 30 1 -0.3633 0.4275 0.9346 31 1 -0.3633 0.5957 -0.8374 32 1 2.5109 3.2071 0.1297 33 1 -0.0354 2.0925 0.9574 34 1 -0.4146 2.0148 -1.6901 35 1 0.5438 4.2498 -1.7625 36 1 5.8514 2.5092 -2.0409 37 1 5.2658 4.8363 -3.0052 38 1 3.5267 5.1075 -3.4554 39 1 1.9427 4.1503 -4.9598 40 1 1.1036 4.8537 -7.1621 41 1 4.9470 4.0138 -8.8721 42 1 5.7682 3.3242 -6.6586 43 1 2.3540 2.6978 -3.7667 44 1 3.6015 1.4162 -3.4468 45 1 5.7267 -1.0990 1.0328 46 1 5.4134 -1.9407 -0.5039 47 1 6.0386 -0.2741 -0.5133 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15505408_15065288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:33 Heat of formation + Delta-G solvation = 32.003228 kcal Electronic energy + Delta-G solvation = -34543.225514 eV Core-core repulsion = 30106.185156 eV Total energy + Delta-G solvation = -4437.040358 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.090 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.60506 -40.45756 -39.74446 -38.55573 -37.36583 -37.32461 -36.98121 -34.54615 -34.18050 -32.33054 -31.91133 -31.16214 -28.21026 -27.04988 -26.87207 -25.99884 -24.01633 -23.62225 -23.23218 -21.15567 -20.77036 -20.20639 -19.99689 -19.20153 -18.60656 -18.04720 -17.51926 -17.24896 -17.00869 -16.71282 -16.30065 -15.97621 -15.85410 -15.81279 -15.55156 -15.18268 -14.95354 -14.88812 -14.75258 -14.62605 -14.57402 -14.44436 -14.26709 -14.09463 -13.79599 -13.73294 -13.69783 -13.64458 -13.51309 -13.33351 -13.22501 -13.09705 -12.92404 -12.78798 -12.58672 -12.44371 -12.22426 -12.05258 -12.01395 -11.64635 -11.47031 -11.34100 -10.87319 -10.76393 -10.17355 -10.03527 -9.82141 -9.43257 -5.15994 -0.83601 -0.46037 -0.36372 0.19642 0.34686 0.64063 0.76517 1.11452 1.31314 1.69945 1.77047 1.87111 1.90892 2.59221 2.75456 2.85068 3.09811 3.15988 3.27034 3.32498 3.38383 3.42676 3.60971 3.63722 3.71112 3.74609 3.85427 3.91632 3.92269 3.99979 4.14715 4.18059 4.25889 4.27768 4.35026 4.45651 4.46934 4.47317 4.57949 4.60737 4.66720 4.69830 4.71831 4.79911 4.84818 4.92194 5.03402 5.04440 5.13253 5.16724 5.18079 5.40023 5.65456 5.73262 6.32705 6.50691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.190 4.190 3 C -0.059 4.059 4 C -0.095 4.095 5 O -0.513 6.513 6 Si 0.632 3.368 7 C -0.682 4.682 8 S 2.704 3.296 9 O -0.947 6.947 10 O -0.941 6.941 11 N -1.093 6.093 12 C 0.115 3.885 13 H 0.099 0.901 14 C -0.132 4.132 15 C -0.074 4.074 16 H 0.109 0.891 17 C -0.041 4.041 18 C -0.121 4.121 19 C -0.066 4.066 20 C -0.032 4.032 21 C 0.250 3.750 22 N -0.414 5.414 23 C -0.066 4.066 24 C -0.114 4.114 25 C -0.152 4.152 26 C -0.044 4.044 27 C -0.117 4.117 28 S 0.162 5.838 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.365 0.635 34 H -0.235 1.235 35 H -0.233 1.233 36 H 0.423 0.577 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 -4.299 -1.274 4.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.308 4.308 3 C -0.070 4.070 4 C -0.206 4.206 5 O -0.320 6.320 6 Si 0.531 3.469 7 C -0.781 4.781 8 S 2.792 3.208 9 O -0.937 6.937 10 O -0.931 6.931 11 N -0.852 5.852 12 C 0.007 3.993 13 H 0.117 0.883 14 C -0.171 4.171 15 C -0.092 4.092 16 H 0.127 0.873 17 C -0.042 4.042 18 C -0.139 4.139 19 C -0.086 4.086 20 C -0.035 4.035 21 C -0.066 4.066 22 N -0.089 5.089 23 C -0.087 4.087 24 C -0.132 4.132 25 C -0.190 4.190 26 C -0.165 4.165 27 C -0.176 4.176 28 S 0.429 5.571 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.169 0.831 33 H 0.215 0.785 34 H -0.160 1.160 35 H -0.156 1.156 36 H 0.259 0.741 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.478 -4.343 -2.180 4.883 hybrid contribution -0.556 0.339 0.841 1.063 sum -0.078 -4.005 -1.339 4.223 Atomic orbital electron populations 1.20824 0.87856 1.04561 1.03595 1.24210 0.99929 0.95282 1.11400 1.18460 0.90619 0.96584 1.01345 1.25754 0.98119 0.95535 1.01172 1.86748 1.31413 1.70879 1.42994 0.95823 0.84648 0.83199 0.83238 1.29326 1.11488 1.13305 1.24001 1.01698 0.73174 0.73540 0.72369 1.93603 1.41599 1.77784 1.80732 1.93520 1.78135 1.51641 1.69814 1.55324 1.21191 1.74913 1.33800 1.21783 0.88356 0.95063 0.94059 0.88312 1.23462 1.04059 0.96152 0.93465 1.21651 0.99936 0.97558 0.90082 0.87312 1.19938 0.93517 0.95942 0.94774 1.20978 0.95610 0.99950 0.97328 1.21198 0.99462 0.96719 0.91253 1.16025 0.94961 1.05713 0.86838 1.25766 0.93937 0.93890 0.93000 1.81315 1.07656 1.08707 1.11176 1.21220 0.93480 0.95643 0.98334 1.21020 1.00276 1.00412 0.91497 1.23680 0.99219 1.01360 0.94790 1.24597 1.00760 0.94916 0.96248 1.21031 0.88302 1.02755 1.05466 1.84408 0.95093 1.08226 1.69386 0.90180 0.90008 0.89321 0.83083 0.78545 1.15982 1.15647 0.74076 0.89329 0.87830 0.84724 0.84845 0.84905 0.84765 0.87805 0.88893 0.88369 0.90046 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.22 8.56 36.00 0.31 0.53 16 2 C -0.19 0.04 6.10 -36.00 -0.22 -0.18 16 3 C -0.06 -0.04 4.32 -106.24 -0.46 -0.50 16 4 C -0.09 -0.11 2.36 36.01 0.08 -0.03 16 5 O -0.51 -1.37 12.88 -35.23 -0.45 -1.82 16 6 Si 0.63 -1.01 23.67 -169.99 -4.02 -5.03 16 7 C -0.68 -0.20 5.85 -41.21 -0.24 -0.44 16 8 S 2.70 0.85 5.39 -107.50 -0.58 0.27 16 9 O -0.95 -1.80 14.60 -57.17 -0.83 -2.63 16 10 O -0.94 -3.47 14.49 -57.17 -0.83 -4.30 16 11 N -1.09 4.14 5.73 -4.20 -0.02 4.11 16 12 C 0.12 -0.48 3.64 -67.12 -0.24 -0.72 16 13 H 0.10 -0.32 2.78 -51.93 -0.14 -0.46 16 14 C -0.13 0.70 7.33 -25.92 -0.19 0.51 16 15 C -0.07 0.44 3.80 -90.96 -0.35 0.10 16 16 H 0.11 -0.79 8.05 -51.93 -0.42 -1.20 16 17 C -0.04 0.19 5.30 -104.53 -0.55 -0.36 16 18 C -0.12 0.53 8.53 -39.64 -0.34 0.19 16 19 C -0.07 0.21 9.76 -39.17 -0.38 -0.18 16 20 C -0.03 0.05 5.73 -106.93 -0.61 -0.56 16 21 C 0.25 0.32 15.33 -22.48 -0.34 -0.02 16 22 N -0.41 -1.81 18.54 41.84 0.78 -1.03 16 23 C -0.07 0.20 9.76 -39.17 -0.38 -0.18 16 24 C -0.11 0.49 9.69 -39.64 -0.38 0.11 16 25 C -0.15 0.88 5.84 -25.93 -0.15 0.73 16 26 C -0.04 0.02 6.50 -36.00 -0.23 -0.21 16 27 C -0.12 0.21 9.16 36.01 0.33 0.54 16 28 S 0.16 -0.15 23.31 -107.50 -2.51 -2.66 16 29 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 30 H 0.08 -0.22 6.36 -51.93 -0.33 -0.55 16 31 H 0.09 -0.21 4.58 -51.93 -0.24 -0.45 16 32 H 0.15 0.31 3.17 -51.93 -0.16 0.14 16 33 H 0.37 -0.22 5.28 45.56 0.24 0.02 16 34 H -0.23 0.27 5.34 56.52 0.30 0.57 16 35 H -0.23 0.00 7.11 56.52 0.40 0.40 16 36 H 0.42 -2.67 8.79 -34.47 -0.30 -2.97 16 37 H 0.09 -0.48 8.14 -51.93 -0.42 -0.90 16 38 H 0.10 -0.59 7.65 -51.93 -0.40 -0.99 16 39 H 0.14 -0.85 6.70 -52.49 -0.35 -1.20 16 40 H 0.13 -0.55 8.06 -52.49 -0.42 -0.98 16 41 H 0.13 -0.53 8.06 -52.49 -0.42 -0.95 16 42 H 0.13 -0.81 8.04 -52.48 -0.42 -1.23 16 43 H 0.10 -0.70 4.12 -51.93 -0.21 -0.92 16 44 H 0.09 -0.60 8.14 -51.93 -0.42 -1.02 16 45 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 46 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 47 H 0.11 -0.23 5.91 -51.93 -0.31 -0.54 16 LS Contribution 386.87 15.07 5.83 5.83 Total: 0.00 -10.83 386.87 -12.31 -23.14 By element: Atomic # 1 Polarization: -9.89 SS G_CDS: -5.31 Total: -15.20 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.36 Total: -0.68 kcal Atomic # 7 Polarization: 2.33 SS G_CDS: 0.75 Total: 3.08 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -2.12 Total: -8.75 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -4.02 Total: -5.03 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -3.09 Total: -2.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -10.83 -12.31 -23.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_15065288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.147 kcal (2) G-P(sol) polarization free energy of solvation -10.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds