Wall clock time and date at job start Mon Mar 8 2021 09:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33395 * 125.20301 * 2 1 4 4 C 1.50708 * 122.53902 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47127 * 52.71755 * 4 3 2 6 6 Si 1.86297 * 109.46919 * 292.71927 * 4 3 2 7 7 C 1.38417 * 114.92021 * 180.21034 * 3 2 1 8 8 S 1.76199 * 122.54148 * 179.76114 * 7 3 2 9 9 O 1.42102 * 106.40537 * 164.18003 * 8 7 3 10 10 O 1.42104 * 106.40027 * 31.25873 * 8 7 3 11 11 N 1.65600 * 107.22011 * 277.72551 * 8 7 3 12 12 C 1.46500 * 120.00261 * 64.99169 * 11 8 7 13 13 H 1.09001 * 112.85044 * 13.81223 * 12 11 8 14 14 C 1.53778 * 113.61023 * 145.00159 * 12 11 8 15 15 C 1.53777 * 87.07967 * 89.20556 * 14 12 11 16 16 H 1.09001 * 113.61715 * 270.87795 * 15 14 12 17 17 C 1.50701 * 113.61630 * 140.06408 * 15 14 12 18 18 C 1.38366 * 119.84896 * 301.25191 * 17 15 14 19 19 C 1.37937 * 120.15563 * 179.76660 * 18 17 15 20 20 C 1.39642 * 119.84684 * 0.48451 * 19 18 17 21 21 C 1.43193 * 120.15483 * 179.78807 * 20 19 18 22 22 N 9.25641 * 135.64094 * 93.73647 * 6 1 2 23 23 C 1.39636 * 119.69437 * 359.77077 * 20 19 18 24 24 C 1.37942 * 119.84773 * 359.97438 * 23 20 19 25 25 C 1.53772 * 113.69321 * 242.53804 * 12 11 8 26 26 C 1.33384 * 114.92222 * 359.49568 * 7 3 2 27 27 C 1.50703 * 125.20524 * 180.24954 * 26 7 3 28 28 S 1.75883 * 125.20313 * 179.69500 * 2 1 3 29 29 H 1.08997 * 109.47049 * 174.58156 * 1 2 3 30 30 H 1.09004 * 109.46747 * 294.57772 * 1 2 3 31 31 H 1.09000 * 109.47157 * 54.57134 * 1 2 3 32 32 H 1.09001 * 109.46676 * 172.72338 * 4 3 2 33 33 H 0.96692 * 114.00269 * 291.97012 * 5 4 3 34 34 H 1.48502 * 110.00038 * 71.30816 * 6 4 3 35 35 H 1.48499 * 109.99997 * 192.62493 * 6 4 3 36 36 H 0.96998 * 119.99992 * 245.00219 * 11 8 7 37 37 H 1.08995 * 113.62381 * 334.65440 * 14 12 11 38 38 H 1.09001 * 113.61213 * 203.74921 * 14 12 11 39 39 H 1.07996 * 119.91805 * 359.97438 * 18 17 15 40 40 H 1.07996 * 120.08431 * 180.25648 * 19 18 17 41 41 H 1.07995 * 120.07313 * 179.97438 * 23 20 19 42 42 H 1.08005 * 119.92494 * 179.97438 * 24 23 20 43 43 H 1.09000 * 113.61646 * 156.32440 * 25 12 11 44 44 H 1.09001 * 113.61474 * 25.42777 * 25 12 11 45 45 H 1.08995 * 109.47606 * 90.00039 * 27 26 7 46 46 H 1.09007 * 109.46989 * 209.99784 * 27 26 7 47 47 H 1.09004 * 109.46934 * 329.99445 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7051 2.4848 -0.0006 5 8 0.7690 2.6168 1.0710 6 14 0.8427 2.8021 -1.6211 7 6 3.6379 0.8429 -0.0046 8 16 4.8356 2.1352 -0.0117 9 8 6.0717 1.5388 0.3565 10 8 4.2563 3.2230 0.6957 11 7 5.0070 2.6362 -1.5807 12 6 3.8833 3.2711 -2.2739 13 1 3.0841 3.5726 -1.5968 14 6 4.3097 4.3763 -3.2545 15 6 4.4152 3.2771 -4.3247 16 1 5.3968 2.8054 -4.3708 17 6 3.9059 3.7013 -5.6781 18 6 2.5963 4.1250 -5.8192 19 6 2.1248 4.5193 -7.0541 20 6 2.9695 4.4804 -8.1653 21 6 2.4856 4.8838 -9.4512 22 7 2.1018 5.2038 -10.4714 23 6 4.2885 4.0467 -8.0167 24 6 4.7483 3.6603 -6.7749 25 6 3.3887 2.4840 -3.4989 26 6 3.9751 -0.4476 0.0023 27 6 5.3860 -0.9770 0.0047 28 16 2.5209 -1.4371 0.0077 29 1 -0.3633 -1.0230 -0.0970 30 1 -0.3633 0.4275 0.9346 31 1 -0.3633 0.5957 -0.8374 32 1 2.5109 3.2071 0.1297 33 1 -0.0354 2.0925 0.9574 34 1 -0.4146 2.0148 -1.6901 35 1 0.5438 4.2498 -1.7625 36 1 5.8514 2.5092 -2.0409 37 1 5.2658 4.8363 -3.0052 38 1 3.5267 5.1075 -3.4554 39 1 1.9427 4.1503 -4.9598 40 1 1.1036 4.8537 -7.1621 41 1 4.9470 4.0138 -8.8721 42 1 5.7682 3.3242 -6.6586 43 1 2.3540 2.6978 -3.7667 44 1 3.6015 1.4162 -3.4468 45 1 5.7267 -1.0990 1.0328 46 1 5.4134 -1.9407 -0.5039 47 1 6.0386 -0.2741 -0.5133 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15505408_15065288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:32 Heat of formation + Delta-G solvation = 30.496072 kcal Electronic energy + Delta-G solvation = -34543.290869 eV Core-core repulsion = 30106.185156 eV Total energy + Delta-G solvation = -4437.105713 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.090 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.23627 -40.40809 -39.47169 -38.61860 -37.43811 -37.37985 -37.07705 -34.29358 -34.08762 -32.01134 -31.63468 -31.03215 -28.15333 -26.66955 -26.50329 -25.89538 -23.68207 -23.36762 -23.14751 -21.03901 -20.57193 -20.05806 -19.74937 -19.14341 -18.55308 -18.04986 -17.33825 -16.99064 -16.83700 -16.45791 -16.22776 -15.89104 -15.78550 -15.54397 -15.44781 -15.10007 -14.75843 -14.73625 -14.59313 -14.50532 -14.32657 -14.18641 -14.14108 -13.99713 -13.74975 -13.68691 -13.58231 -13.43900 -13.38488 -13.29037 -13.16737 -12.95880 -12.75643 -12.69891 -12.55029 -12.17070 -12.07671 -11.72929 -11.60769 -11.53549 -11.28733 -11.10340 -10.85320 -10.44712 -9.95017 -9.83906 -9.54363 -9.36284 -5.03537 -0.79324 -0.40132 -0.13087 0.43536 0.53691 0.70656 0.83078 1.17520 1.44352 1.63692 1.87182 1.96764 2.02628 2.62433 2.94121 2.95424 3.16579 3.31291 3.51476 3.54923 3.69897 3.73875 3.79193 4.00387 4.02180 4.09037 4.11545 4.12158 4.16984 4.27940 4.36732 4.45596 4.51543 4.53270 4.61802 4.63551 4.72289 4.82456 4.87578 4.93059 4.95890 5.00805 5.05113 5.17008 5.18692 5.24481 5.25271 5.28131 5.38483 5.48250 5.54924 5.79030 6.00551 6.14520 6.38826 6.47277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.197 4.197 3 C -0.071 4.071 4 C -0.123 4.123 5 O -0.540 6.540 6 Si 0.707 3.293 7 C -0.690 4.690 8 S 2.714 3.286 9 O -0.969 6.969 10 O -0.982 6.982 11 N -1.076 6.076 12 C 0.101 3.899 13 H 0.087 0.913 14 C -0.133 4.133 15 C -0.067 4.067 16 H 0.128 0.872 17 C -0.033 4.033 18 C -0.123 4.123 19 C -0.068 4.068 20 C -0.056 4.056 21 C 0.276 3.724 22 N -0.481 5.481 23 C -0.070 4.070 24 C -0.114 4.114 25 C -0.152 4.152 26 C -0.048 4.048 27 C -0.123 4.123 28 S 0.180 5.820 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.376 0.624 34 H -0.237 1.237 35 H -0.258 1.258 36 H 0.436 0.564 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -5.620 -1.405 6.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.315 4.315 3 C -0.081 4.081 4 C -0.231 4.231 5 O -0.350 6.350 6 Si 0.606 3.394 7 C -0.791 4.791 8 S 2.803 3.197 9 O -0.959 6.959 10 O -0.971 6.971 11 N -0.839 5.839 12 C -0.007 4.007 13 H 0.105 0.895 14 C -0.172 4.172 15 C -0.085 4.085 16 H 0.146 0.854 17 C -0.034 4.034 18 C -0.141 4.141 19 C -0.089 4.089 20 C -0.060 4.060 21 C -0.038 4.038 22 N -0.157 5.157 23 C -0.090 4.090 24 C -0.132 4.132 25 C -0.190 4.190 26 C -0.169 4.169 27 C -0.181 4.181 28 S 0.447 5.553 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.155 0.845 33 H 0.227 0.773 34 H -0.162 1.162 35 H -0.183 1.183 36 H 0.276 0.724 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.173 0.827 43 H 0.133 0.867 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.120 0.880 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.798 -5.675 -2.294 6.173 hybrid contribution -0.592 0.727 1.026 1.390 sum 0.206 -4.948 -1.268 5.112 Atomic orbital electron populations 1.20934 0.86816 1.05515 1.04056 1.24474 1.00857 0.95381 1.10820 1.18465 0.90863 0.96565 1.02245 1.26180 0.98341 0.95718 1.02899 1.86697 1.32296 1.71466 1.44509 0.94997 0.82652 0.80913 0.80877 1.29266 1.11384 1.13495 1.24914 1.01090 0.72489 0.73024 0.73089 1.93567 1.42504 1.78048 1.81778 1.93480 1.78759 1.53246 1.71645 1.54917 1.22147 1.74473 1.32407 1.21970 0.88051 0.96316 0.94330 0.89527 1.23529 1.04465 0.96187 0.93064 1.21697 1.00752 0.97129 0.88893 0.85450 1.20134 0.93302 0.94740 0.95242 1.21242 0.96181 0.99302 0.97351 1.21339 0.99661 0.96573 0.91308 1.16178 0.96062 1.07908 0.85849 1.26288 0.92292 0.92142 0.93039 1.81318 1.09826 1.11431 1.13136 1.21357 0.92926 0.95453 0.99292 1.21267 1.01302 0.99800 0.90843 1.23776 0.99849 1.02036 0.93350 1.24804 1.01581 0.94821 0.95710 1.21142 0.87567 1.03918 1.05467 1.84310 0.94484 1.07556 1.68951 0.89007 0.89643 0.88719 0.84456 0.77340 1.16211 1.18298 0.72428 0.89040 0.87254 0.82704 0.84296 0.84491 0.82696 0.86673 0.87648 0.88898 0.87956 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.54 8.56 71.24 0.61 1.15 16 2 C -0.20 0.17 6.10 24.59 0.15 0.32 16 3 C -0.07 -0.10 4.32 -20.92 -0.09 -0.19 16 4 C -0.12 -0.38 2.36 71.24 0.17 -0.21 16 5 O -0.54 -3.51 12.88 -148.98 -1.92 -5.43 16 6 Si 0.71 -2.70 23.67 68.60 1.62 -1.08 16 7 C -0.69 -0.59 5.85 21.21 0.12 -0.47 16 8 S 2.71 3.75 5.39 -56.49 -0.30 3.45 16 9 O -0.97 -4.39 14.60 -128.00 -1.87 -6.26 16 10 O -0.98 -9.01 14.49 -128.00 -1.85 -10.86 16 11 N -1.08 8.69 5.73 -167.21 -0.96 7.73 16 12 C 0.10 -0.93 3.64 45.51 0.17 -0.77 16 13 H 0.09 -0.56 2.78 -2.39 -0.01 -0.57 16 14 C -0.13 1.62 7.33 31.12 0.23 1.85 16 15 C -0.07 0.96 3.80 -11.02 -0.04 0.92 16 16 H 0.13 -2.27 8.05 -2.39 -0.02 -2.29 16 17 C -0.03 0.38 5.30 -19.80 -0.10 0.28 16 18 C -0.12 1.31 8.53 22.23 0.19 1.49 16 19 C -0.07 0.47 9.76 22.54 0.22 0.69 16 20 C -0.06 0.19 5.73 -21.36 -0.12 0.07 16 21 C 0.28 1.06 15.33 88.33 1.35 2.42 16 22 N -0.48 -5.16 18.54 19.00 0.35 -4.81 16 23 C -0.07 0.47 9.76 22.54 0.22 0.69 16 24 C -0.11 1.21 9.69 22.23 0.22 1.43 16 25 C -0.15 2.08 5.84 31.12 0.18 2.27 16 26 C -0.05 0.06 6.50 24.59 0.16 0.22 16 27 C -0.12 0.50 9.16 71.24 0.65 1.16 16 28 S 0.18 -0.47 23.31 -56.49 -1.32 -1.79 16 29 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.09 -0.47 6.36 -2.38 -0.02 -0.48 16 31 H 0.09 -0.56 4.58 -2.39 -0.01 -0.57 16 32 H 0.14 0.78 3.17 -2.39 -0.01 0.77 16 33 H 0.38 -0.19 5.28 -74.06 -0.39 -0.58 16 34 H -0.24 0.89 5.34 99.48 0.53 1.42 16 35 H -0.26 0.03 7.11 99.48 0.71 0.73 16 36 H 0.44 -6.00 8.79 -96.75 -0.85 -6.85 16 37 H 0.09 -1.13 8.14 -2.39 -0.02 -1.15 16 38 H 0.11 -1.43 7.65 -2.39 -0.02 -1.45 16 39 H 0.16 -2.32 6.70 -2.91 -0.02 -2.34 16 40 H 0.14 -1.19 8.06 -2.91 -0.02 -1.22 16 41 H 0.14 -1.12 8.06 -2.91 -0.02 -1.14 16 42 H 0.16 -2.31 8.04 -2.91 -0.02 -2.33 16 43 H 0.12 -1.84 4.12 -2.39 -0.01 -1.85 16 44 H 0.11 -1.64 8.14 -2.39 -0.02 -1.66 16 45 H 0.09 -0.27 8.14 -2.39 -0.02 -0.28 16 46 H 0.10 -0.89 8.14 -2.38 -0.02 -0.90 16 47 H 0.11 -0.51 5.91 -2.39 -0.01 -0.53 16 Total: 0.00 -27.42 386.87 -2.26 -29.68 By element: Atomic # 1 Polarization: -23.64 SS G_CDS: -0.29 Total: -23.94 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 4.28 Total: 13.30 kcal Atomic # 7 Polarization: 3.53 SS G_CDS: -0.61 Total: 2.92 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -5.64 Total: -22.55 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 1.62 Total: -1.08 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.62 Total: 1.66 kcal Total: -27.42 -2.26 -29.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_15065288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.176 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds