Wall clock time and date at job start Mon Mar 8 2021 09:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39626 * 120.15003 * 39.21639 * 3 2 1 5 5 C 1.37951 * 119.84574 * 179.97438 * 4 3 2 6 6 C 1.38365 * 120.14989 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.84694 * 179.97438 * 6 5 4 8 8 H 1.08995 * 112.84869 * 9.66769 * 7 6 5 9 9 C 1.53786 * 113.61373 * 140.86415 * 7 6 5 10 10 C 1.53949 * 87.01969 * 139.95091 * 9 7 6 11 11 H 1.08994 * 113.74582 * 220.05615 * 10 9 7 12 12 N 1.46497 * 113.53636 * 89.18692 * 10 9 7 13 13 S 1.65604 * 120.00306 * 117.78084 * 12 10 9 14 14 O 1.42090 * 106.40558 * 178.02375 * 13 12 10 15 15 O 1.42103 * 106.39917 * 310.94889 * 13 12 10 16 16 C 1.76204 * 107.21295 * 64.48244 * 13 12 10 17 17 C 1.38213 * 120.00009 * 64.05660 * 16 13 12 18 18 C 1.50698 * 119.99839 * 359.97091 * 17 16 13 19 19 O 1.42901 * 109.46717 * 75.82219 * 18 17 16 20 20 Si 1.86299 * 109.47008 * 195.82018 * 18 17 16 21 21 C 1.38252 * 119.99835 * 180.02562 * 17 16 13 22 22 C 1.38218 * 120.00474 * 359.96787 * 21 17 16 23 23 C 1.38262 * 119.99662 * 359.97438 * 22 21 17 24 24 C 1.38213 * 119.99704 * 359.80586 * 23 22 21 25 25 C 1.53777 * 113.61326 * 238.46995 * 7 6 5 26 26 C 1.38365 * 120.30801 * 0.25862 * 6 5 4 27 27 C 1.37955 * 120.14628 * 359.48416 * 26 6 5 28 28 H 1.07994 * 120.07840 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.92660 * 180.02562 * 5 4 3 30 30 H 1.09004 * 113.61408 * 254.53002 * 9 7 6 31 31 H 1.09001 * 113.61271 * 25.43005 * 9 7 6 32 32 H 0.97005 * 120.00250 * 297.77717 * 12 10 9 33 33 H 1.09000 * 109.46986 * 315.82022 * 18 17 16 34 34 H 0.96697 * 114.00018 * 65.09445 * 19 18 17 35 35 H 1.48494 * 110.00117 * 180.02562 * 20 18 17 36 36 H 1.48498 * 110.00060 * 301.32362 * 20 18 17 37 37 H 1.08002 * 120.00345 * 179.97438 * 21 17 16 38 38 H 1.07992 * 120.00585 * 179.97438 * 22 21 17 39 39 H 1.07993 * 119.99914 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99947 * 180.23452 * 24 23 22 41 41 H 1.08996 * 113.61511 * 334.56749 * 25 7 6 42 42 H 1.08999 * 113.61339 * 105.38909 * 25 7 6 43 43 H 1.07994 * 119.92590 * 179.74701 * 26 6 5 44 44 H 1.08004 * 120.07529 * 180.23155 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.9345 -0.7634 5 6 4.6492 -0.9278 -0.7591 6 6 5.3374 0.0030 -0.0012 7 6 6.8444 0.0037 -0.0012 8 1 7.2680 -0.6573 -0.7573 9 6 7.4598 1.4130 -0.0004 10 6 8.5063 0.8683 0.9885 11 1 8.7591 1.5647 1.7880 12 7 9.6876 0.2989 0.3355 13 16 11.1801 0.9684 0.5938 14 8 12.1078 0.1726 -0.1308 15 8 11.0324 2.3674 0.3926 16 6 11.5620 0.7488 2.2999 17 6 11.7159 -0.5244 2.8152 18 6 11.5564 -1.7248 1.9181 19 8 12.7185 -1.8643 1.0983 20 14 11.3438 -3.2546 2.9598 21 6 12.0150 -0.6968 4.1539 22 6 12.1608 0.4041 4.9769 23 6 12.0080 1.6778 4.4611 24 6 11.7135 1.8502 3.1218 25 6 7.4605 -0.1833 1.3954 26 6 4.6484 0.9294 0.7614 27 6 3.2689 0.9374 0.7622 28 1 2.7338 -1.6612 -1.3557 29 1 5.1933 -1.6502 -1.3494 30 1 7.8787 1.7071 -0.9628 31 1 6.8079 2.1739 0.4288 32 1 9.5957 -0.4705 -0.2482 33 1 10.6791 -1.5913 1.2852 34 1 13.5260 -2.0643 1.5914 35 1 11.1862 -4.4455 2.0869 36 1 12.5192 -3.4301 3.8502 37 1 12.1349 -1.6916 4.5568 38 1 12.3940 0.2695 6.0227 39 1 12.1215 2.5380 5.1041 40 1 11.5978 2.8452 2.7180 41 1 6.8088 0.1404 2.2069 42 1 7.8787 -1.1765 1.5587 43 1 5.1918 1.6505 1.3538 44 1 2.7322 1.6635 1.3550 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15505408_2726874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:39 Heat of formation + Delta-G solvation = 21.440814 kcal Electronic energy + Delta-G solvation = -30925.468091 eV Core-core repulsion = 26709.892704 eV Total energy + Delta-G solvation = -4215.575387 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.102 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.47703 -40.78998 -39.66166 -38.34534 -37.52761 -37.31750 -36.72455 -34.48998 -32.92787 -32.49675 -32.28727 -31.83880 -27.13822 -26.85621 -26.76811 -24.52617 -23.97229 -23.51475 -22.88051 -20.94677 -20.49477 -19.96552 -19.32689 -18.49518 -18.12245 -17.35235 -17.20092 -16.92296 -16.72544 -16.51003 -16.07762 -15.96875 -15.76787 -15.56715 -15.13655 -15.10953 -14.97024 -14.78155 -14.53348 -14.38733 -14.23110 -14.00083 -13.73761 -13.70309 -13.58196 -13.47865 -13.20896 -13.01654 -12.93831 -12.82420 -12.75290 -12.40843 -12.36669 -12.06837 -11.98164 -11.94258 -11.54430 -11.40032 -10.80774 -10.59370 -10.54864 -10.17290 -10.14003 -9.77944 -5.15166 -0.65963 -0.32875 -0.32343 0.01940 0.22795 1.02023 1.39641 1.72016 1.78278 1.86932 1.90312 2.30088 2.73491 2.78791 2.87691 3.16051 3.24455 3.32460 3.43712 3.46344 3.48879 3.68363 3.73065 3.75166 3.77819 3.79254 3.92943 4.00358 4.04062 4.15457 4.19007 4.26835 4.33788 4.46126 4.48914 4.56687 4.64602 4.65627 4.73022 4.78943 4.87731 4.89908 4.93537 5.00320 5.09240 5.15970 5.20360 5.24137 5.45145 5.60844 5.68995 5.81619 6.34423 6.52764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.250 3.750 3 C -0.033 4.033 4 C -0.067 4.067 5 C -0.116 4.116 6 C -0.040 4.040 7 C -0.081 4.081 8 H 0.104 0.896 9 C -0.143 4.143 10 C 0.126 3.874 11 H 0.104 0.896 12 N -1.101 6.101 13 S 2.686 3.314 14 O -0.923 6.923 15 O -0.957 6.957 16 C -0.655 4.655 17 C -0.012 4.012 18 C -0.110 4.110 19 O -0.488 6.488 20 Si 0.693 3.307 21 C -0.145 4.145 22 C -0.057 4.057 23 C -0.134 4.134 24 C -0.022 4.022 25 C -0.137 4.137 26 C -0.119 4.119 27 C -0.066 4.066 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.420 0.580 33 H 0.118 0.882 34 H 0.371 0.629 35 H -0.249 1.249 36 H -0.255 1.255 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 -1.337 5.746 6.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.065 4.065 3 C -0.037 4.037 4 C -0.087 4.087 5 C -0.134 4.134 6 C -0.041 4.041 7 C -0.099 4.099 8 H 0.122 0.878 9 C -0.183 4.183 10 C 0.018 3.982 11 H 0.122 0.878 12 N -0.859 5.859 13 S 2.775 3.225 14 O -0.913 6.913 15 O -0.947 6.947 16 C -0.741 4.741 17 C -0.014 4.014 18 C -0.220 4.220 19 O -0.293 6.293 20 Si 0.593 3.407 21 C -0.163 4.163 22 C -0.075 4.075 23 C -0.153 4.153 24 C -0.041 4.041 25 C -0.176 4.176 26 C -0.137 4.137 27 C -0.087 4.087 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.255 0.745 33 H 0.135 0.865 34 H 0.218 0.782 35 H -0.174 1.174 36 H -0.180 1.180 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.153 0.847 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.211 -1.438 4.976 5.184 hybrid contribution 1.364 -0.276 0.281 1.420 sum 1.575 -1.714 5.257 5.749 Atomic orbital electron populations 1.81310 1.12115 1.07584 1.07912 1.25768 0.92732 0.94028 0.94001 1.16018 0.84295 1.00336 1.03022 1.21213 0.94352 0.96643 0.96497 1.21030 0.93422 0.99206 0.99757 1.19975 0.95237 0.94160 0.94686 1.21685 0.90345 0.98975 0.98888 0.87829 1.23615 0.97389 0.96038 1.01228 1.21663 0.85104 0.96037 0.95357 0.87763 1.55539 1.22611 1.46920 1.60871 1.02361 0.72558 0.73761 0.73860 1.93740 1.58899 1.69479 1.69189 1.93602 1.85710 1.30979 1.84402 1.30833 1.17794 0.98916 1.26575 1.19915 0.93625 0.93371 0.94502 1.25395 0.93117 1.03804 0.99714 1.86969 1.17024 1.92109 1.33215 0.94937 0.89363 0.75906 0.80489 1.21310 1.01845 0.99907 0.93262 1.21488 0.93483 0.92416 1.00136 1.21409 1.00451 0.97866 0.95540 1.21094 0.91605 0.97993 0.93441 1.23490 0.97199 1.00257 0.96609 1.20966 0.93338 0.99391 0.99964 1.21199 0.94292 0.96585 0.96592 0.84932 0.84869 0.89873 0.88242 0.74470 0.86471 0.78185 1.17390 1.18035 0.84642 0.84727 0.84625 0.83658 0.88110 0.89794 0.84692 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -1.97 18.54 41.84 0.78 -1.19 16 2 C 0.25 0.44 15.33 -22.47 -0.34 0.09 16 3 C -0.03 0.04 5.73 -106.93 -0.61 -0.58 16 4 C -0.07 0.15 9.76 -39.17 -0.38 -0.23 16 5 C -0.12 0.38 9.69 -39.64 -0.38 0.00 16 6 C -0.04 0.15 5.30 -104.53 -0.55 -0.41 16 7 C -0.08 0.39 3.79 -90.96 -0.34 0.04 16 8 H 0.10 -0.56 8.04 -51.93 -0.42 -0.98 16 9 C -0.14 0.57 7.26 -25.83 -0.19 0.39 16 10 C 0.13 -0.53 4.44 -67.03 -0.30 -0.83 16 11 H 0.10 -0.49 8.05 -51.93 -0.42 -0.91 16 12 N -1.10 3.21 4.46 -4.12 -0.02 3.19 16 13 S 2.69 2.18 4.93 -107.50 -0.53 1.65 16 14 O -0.92 -3.81 15.00 -66.42 -1.00 -4.81 16 15 O -0.96 -3.34 16.74 -57.17 -0.96 -4.30 16 16 C -0.66 0.13 5.87 -39.58 -0.23 -0.10 16 17 C -0.01 0.01 5.27 -104.63 -0.55 -0.54 16 18 C -0.11 0.15 1.87 36.00 0.07 0.21 16 19 O -0.49 -0.60 10.59 -57.77 -0.61 -1.21 16 20 Si 0.69 -1.86 30.20 -169.99 -5.13 -6.99 16 21 C -0.14 0.30 8.66 -39.58 -0.34 -0.05 16 22 C -0.06 0.14 10.05 -39.58 -0.40 -0.25 16 23 C -0.13 0.27 10.05 -39.58 -0.40 -0.13 16 24 C -0.02 0.02 9.55 -39.58 -0.38 -0.36 16 25 C -0.14 0.77 7.33 -25.92 -0.19 0.58 16 26 C -0.12 0.44 8.50 -39.64 -0.34 0.10 16 27 C -0.07 0.17 9.76 -39.16 -0.38 -0.21 16 28 H 0.13 -0.43 8.06 -52.49 -0.42 -0.86 16 29 H 0.13 -0.65 8.04 -52.49 -0.42 -1.07 16 30 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 31 H 0.10 -0.48 6.40 -51.93 -0.33 -0.81 16 32 H 0.42 -1.89 8.46 -34.47 -0.29 -2.18 16 33 H 0.12 -0.34 5.81 -51.93 -0.30 -0.65 16 34 H 0.37 -0.60 8.61 45.56 0.39 -0.21 16 35 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 36 H -0.26 0.27 6.66 56.52 0.38 0.65 16 37 H 0.14 -0.47 4.87 -52.49 -0.26 -0.73 16 38 H 0.13 -0.64 8.06 -52.49 -0.42 -1.06 16 39 H 0.14 -0.54 8.06 -52.49 -0.42 -0.97 16 40 H 0.15 -0.19 7.34 -52.48 -0.39 -0.58 16 41 H 0.10 -0.63 7.61 -51.93 -0.40 -1.02 16 42 H 0.08 -0.53 8.14 -51.93 -0.42 -0.96 16 43 H 0.14 -0.75 6.70 -52.49 -0.35 -1.11 16 44 H 0.13 -0.48 8.06 -52.48 -0.42 -0.91 16 LS Contribution 380.87 15.07 5.74 5.74 Total: 0.00 -11.98 380.87 -12.92 -24.90 By element: Atomic # 1 Polarization: -9.77 SS G_CDS: -4.94 Total: -14.70 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -6.25 Total: -2.27 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: 0.76 Total: 2.00 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -2.57 Total: -10.32 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: -5.13 Total: -6.99 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -0.53 Total: 1.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -11.98 -12.92 -24.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_2726874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.336 kcal (2) G-P(sol) polarization free energy of solvation -11.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds