Wall clock time and date at job start Mon Mar 8 2021 09:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39626 * 120.15003 * 39.21639 * 3 2 1 5 5 C 1.37951 * 119.84574 * 179.97438 * 4 3 2 6 6 C 1.38365 * 120.14989 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.84694 * 179.97438 * 6 5 4 8 8 H 1.08995 * 112.84869 * 9.66769 * 7 6 5 9 9 C 1.53786 * 113.61373 * 140.86415 * 7 6 5 10 10 C 1.53949 * 87.01969 * 139.95091 * 9 7 6 11 11 H 1.08994 * 113.74582 * 220.05615 * 10 9 7 12 12 N 1.46497 * 113.53636 * 89.18692 * 10 9 7 13 13 S 1.65604 * 120.00306 * 117.78084 * 12 10 9 14 14 O 1.42090 * 106.40558 * 178.02375 * 13 12 10 15 15 O 1.42103 * 106.39917 * 310.94889 * 13 12 10 16 16 C 1.76204 * 107.21295 * 64.48244 * 13 12 10 17 17 C 1.38213 * 120.00009 * 64.05660 * 16 13 12 18 18 C 1.50698 * 119.99839 * 359.97091 * 17 16 13 19 19 O 1.42901 * 109.46717 * 75.82219 * 18 17 16 20 20 Si 1.86299 * 109.47008 * 195.82018 * 18 17 16 21 21 C 1.38252 * 119.99835 * 180.02562 * 17 16 13 22 22 C 1.38218 * 120.00474 * 359.96787 * 21 17 16 23 23 C 1.38262 * 119.99662 * 359.97438 * 22 21 17 24 24 C 1.38213 * 119.99704 * 359.80586 * 23 22 21 25 25 C 1.53777 * 113.61326 * 238.46995 * 7 6 5 26 26 C 1.38365 * 120.30801 * 0.25862 * 6 5 4 27 27 C 1.37955 * 120.14628 * 359.48416 * 26 6 5 28 28 H 1.07994 * 120.07840 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.92660 * 180.02562 * 5 4 3 30 30 H 1.09004 * 113.61408 * 254.53002 * 9 7 6 31 31 H 1.09001 * 113.61271 * 25.43005 * 9 7 6 32 32 H 0.97005 * 120.00250 * 297.77717 * 12 10 9 33 33 H 1.09000 * 109.46986 * 315.82022 * 18 17 16 34 34 H 0.96697 * 114.00018 * 65.09445 * 19 18 17 35 35 H 1.48494 * 110.00117 * 180.02562 * 20 18 17 36 36 H 1.48498 * 110.00060 * 301.32362 * 20 18 17 37 37 H 1.08002 * 120.00345 * 179.97438 * 21 17 16 38 38 H 1.07992 * 120.00585 * 179.97438 * 22 21 17 39 39 H 1.07993 * 119.99914 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99947 * 180.23452 * 24 23 22 41 41 H 1.08996 * 113.61511 * 334.56749 * 25 7 6 42 42 H 1.08999 * 113.61339 * 105.38909 * 25 7 6 43 43 H 1.07994 * 119.92590 * 179.74701 * 26 6 5 44 44 H 1.08004 * 120.07529 * 180.23155 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.9345 -0.7634 5 6 4.6492 -0.9278 -0.7591 6 6 5.3374 0.0030 -0.0012 7 6 6.8444 0.0037 -0.0012 8 1 7.2680 -0.6573 -0.7573 9 6 7.4598 1.4130 -0.0004 10 6 8.5063 0.8683 0.9885 11 1 8.7591 1.5647 1.7880 12 7 9.6876 0.2989 0.3355 13 16 11.1801 0.9684 0.5938 14 8 12.1078 0.1726 -0.1308 15 8 11.0324 2.3674 0.3926 16 6 11.5620 0.7488 2.2999 17 6 11.7159 -0.5244 2.8152 18 6 11.5564 -1.7248 1.9181 19 8 12.7185 -1.8643 1.0983 20 14 11.3438 -3.2546 2.9598 21 6 12.0150 -0.6968 4.1539 22 6 12.1608 0.4041 4.9769 23 6 12.0080 1.6778 4.4611 24 6 11.7135 1.8502 3.1218 25 6 7.4605 -0.1833 1.3954 26 6 4.6484 0.9294 0.7614 27 6 3.2689 0.9374 0.7622 28 1 2.7338 -1.6612 -1.3557 29 1 5.1933 -1.6502 -1.3494 30 1 7.8787 1.7071 -0.9628 31 1 6.8079 2.1739 0.4288 32 1 9.5957 -0.4705 -0.2482 33 1 10.6791 -1.5913 1.2852 34 1 13.5260 -2.0643 1.5914 35 1 11.1862 -4.4455 2.0869 36 1 12.5192 -3.4301 3.8502 37 1 12.1349 -1.6916 4.5568 38 1 12.3940 0.2695 6.0227 39 1 12.1215 2.5380 5.1041 40 1 11.5978 2.8452 2.7180 41 1 6.8088 0.1404 2.2069 42 1 7.8787 -1.1765 1.5587 43 1 5.1918 1.6505 1.3538 44 1 2.7322 1.6635 1.3550 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15505408_2726874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:37 Heat of formation + Delta-G solvation = 20.942465 kcal Electronic energy + Delta-G solvation = -30925.489701 eV Core-core repulsion = 26709.892704 eV Total energy + Delta-G solvation = -4215.596997 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.102 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.17718 -40.63259 -39.43904 -38.42351 -37.54129 -37.42590 -36.88240 -34.30451 -32.78611 -32.33712 -32.03959 -31.63061 -26.97869 -26.54301 -26.46499 -24.37808 -23.70832 -23.28803 -22.73122 -20.82950 -20.28838 -19.79720 -19.21563 -18.46830 -18.06106 -17.17830 -16.98125 -16.77848 -16.49194 -16.33572 -16.00949 -15.82655 -15.53977 -15.49601 -15.12166 -14.97531 -14.77568 -14.66054 -14.30665 -14.17962 -14.13691 -13.86122 -13.77492 -13.52582 -13.42520 -13.35222 -13.14489 -13.04148 -12.99234 -12.80781 -12.71010 -12.28577 -12.11010 -11.96495 -11.72703 -11.61868 -11.40520 -11.05551 -10.69688 -10.40972 -10.33409 -10.01509 -9.88004 -9.57170 -4.94563 -0.63194 -0.21892 -0.16457 0.18402 0.49366 1.20386 1.57967 1.60935 1.93761 1.94886 1.98078 2.45376 2.75016 2.90507 2.92429 3.28854 3.47067 3.51492 3.62468 3.78932 3.82947 3.88966 3.99221 4.02154 4.05001 4.13979 4.17622 4.24609 4.35322 4.38132 4.44001 4.49288 4.59073 4.63679 4.84007 4.85067 4.90003 5.00345 5.03380 5.07554 5.16538 5.21660 5.24430 5.28513 5.35215 5.35430 5.43897 5.58686 5.76068 5.80573 5.96248 6.10522 6.44381 6.50133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.277 3.723 3 C -0.056 4.056 4 C -0.070 4.070 5 C -0.120 4.120 6 C -0.034 4.034 7 C -0.079 4.079 8 H 0.111 0.889 9 C -0.149 4.149 10 C 0.118 3.882 11 H 0.110 0.890 12 N -1.090 6.090 13 S 2.696 3.304 14 O -0.964 6.964 15 O -0.992 6.992 16 C -0.661 4.661 17 C -0.017 4.017 18 C -0.130 4.130 19 O -0.516 6.516 20 Si 0.785 3.215 21 C -0.148 4.148 22 C -0.055 4.055 23 C -0.136 4.136 24 C -0.038 4.038 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.067 4.067 28 H 0.137 0.863 29 H 0.150 0.850 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.427 0.573 33 H 0.128 0.872 34 H 0.379 0.621 35 H -0.294 1.294 36 H -0.273 1.273 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.157 0.843 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -1.730 7.620 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.037 4.037 3 C -0.060 4.060 4 C -0.090 4.090 5 C -0.138 4.138 6 C -0.035 4.035 7 C -0.097 4.097 8 H 0.129 0.871 9 C -0.188 4.188 10 C 0.010 3.990 11 H 0.128 0.872 12 N -0.851 5.851 13 S 2.788 3.212 14 O -0.954 6.954 15 O -0.982 6.982 16 C -0.750 4.750 17 C -0.019 4.019 18 C -0.238 4.238 19 O -0.322 6.322 20 Si 0.687 3.313 21 C -0.166 4.166 22 C -0.073 4.073 23 C -0.155 4.155 24 C -0.057 4.057 25 C -0.165 4.165 26 C -0.136 4.136 27 C -0.088 4.088 28 H 0.155 0.845 29 H 0.168 0.832 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.265 0.735 33 H 0.146 0.854 34 H 0.227 0.773 35 H -0.222 1.222 36 H -0.200 1.200 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.161 0.839 41 H 0.132 0.868 42 H 0.115 0.885 43 H 0.174 0.826 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.892 -1.802 6.821 7.111 hybrid contribution 1.251 -0.148 -0.288 1.292 sum 2.143 -1.950 6.533 7.147 Atomic orbital electron populations 1.81315 1.13910 1.09892 1.10350 1.26240 0.93182 0.92176 0.92145 1.16161 0.82781 1.02066 1.04988 1.21338 0.94956 0.96445 0.96288 1.21249 0.92977 0.99676 0.99886 1.20167 0.95822 0.93607 0.93891 1.21730 0.89532 0.98582 0.99876 0.87109 1.23691 0.97682 0.96833 1.00639 1.21867 0.84648 0.96967 0.95494 0.87240 1.55204 1.21772 1.47010 1.61153 1.01625 0.72787 0.72728 0.74074 1.93685 1.60867 1.70020 1.70800 1.93551 1.86343 1.33036 1.85285 1.30563 1.19217 0.99712 1.25500 1.19964 0.93952 0.92919 0.95076 1.25806 0.92742 1.04970 1.00306 1.86937 1.18142 1.92397 1.34760 0.93989 0.87321 0.72100 0.77851 1.21540 1.01293 1.00973 0.92803 1.21847 0.92211 0.91884 1.01379 1.21688 0.99698 0.99024 0.95091 1.21230 0.92347 0.97821 0.94290 1.23503 0.96284 1.00443 0.96295 1.21206 0.92831 0.99638 0.99919 1.21357 0.94930 0.96244 0.96220 0.84476 0.83237 0.91353 0.87214 0.73489 0.85442 0.77313 1.22207 1.19970 0.83106 0.82112 0.82691 0.83875 0.86784 0.88486 0.82577 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.46 18.54 19.00 0.35 -5.11 16 2 C 0.28 1.32 15.33 88.33 1.35 2.68 16 3 C -0.06 0.11 5.73 -21.36 -0.12 -0.01 16 4 C -0.07 0.33 9.76 22.54 0.22 0.55 16 5 C -0.12 0.93 9.69 22.23 0.22 1.15 16 6 C -0.03 0.30 5.30 -19.80 -0.10 0.20 16 7 C -0.08 0.88 3.79 -11.01 -0.04 0.84 16 8 H 0.11 -1.37 8.04 -2.39 -0.02 -1.39 16 9 C -0.15 1.32 7.26 31.18 0.23 1.55 16 10 C 0.12 -1.08 4.44 45.58 0.20 -0.88 16 11 H 0.11 -1.11 8.05 -2.39 -0.02 -1.12 16 12 N -1.09 6.26 4.46 -166.96 -0.74 5.51 16 13 S 2.70 7.44 4.93 -56.49 -0.28 7.16 16 14 O -0.96 -9.64 15.00 -119.16 -1.79 -11.42 16 15 O -0.99 -8.53 16.74 -128.00 -2.14 -10.68 16 16 C -0.66 0.13 5.87 22.27 0.13 0.26 16 17 C -0.02 0.05 5.27 -19.87 -0.10 -0.06 16 18 C -0.13 0.37 1.87 71.24 0.13 0.50 16 19 O -0.52 -1.69 10.59 -127.43 -1.35 -3.04 16 20 Si 0.78 -4.89 30.20 68.60 2.07 -2.82 16 21 C -0.15 0.85 8.66 22.27 0.19 1.04 16 22 C -0.06 0.39 10.05 22.27 0.22 0.62 16 23 C -0.14 0.73 10.05 22.27 0.22 0.96 16 24 C -0.04 0.06 9.55 22.27 0.21 0.27 16 25 C -0.13 1.69 7.33 31.12 0.23 1.91 16 26 C -0.12 1.06 8.50 22.23 0.19 1.25 16 27 C -0.07 0.38 9.76 22.54 0.22 0.60 16 28 H 0.14 -0.87 8.06 -2.91 -0.02 -0.89 16 29 H 0.15 -1.69 8.04 -2.91 -0.02 -1.72 16 30 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.11 -1.21 6.40 -2.39 -0.02 -1.23 16 32 H 0.43 -3.85 8.46 -96.74 -0.82 -4.67 16 33 H 0.13 -0.78 5.81 -2.39 -0.01 -0.79 16 34 H 0.38 -0.88 8.61 -74.06 -0.64 -1.52 16 35 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 36 H -0.27 0.93 6.66 99.48 0.66 1.59 16 37 H 0.15 -1.39 4.87 -2.91 -0.01 -1.40 16 38 H 0.16 -2.02 8.06 -2.91 -0.02 -2.04 16 39 H 0.16 -1.52 8.06 -2.91 -0.02 -1.55 16 40 H 0.14 -0.26 7.34 -2.91 -0.02 -0.28 16 41 H 0.11 -1.76 7.61 -2.39 -0.02 -1.77 16 42 H 0.10 -1.49 8.14 -2.39 -0.02 -1.51 16 43 H 0.16 -2.11 6.70 -2.91 -0.02 -2.13 16 44 H 0.14 -1.08 8.06 -2.91 -0.02 -1.11 16 Total: 0.00 -29.87 380.87 -0.66 -30.53 By element: Atomic # 1 Polarization: -23.18 SS G_CDS: -0.38 Total: -23.56 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 3.60 Total: 13.41 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -0.39 Total: 0.41 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -5.28 Total: -25.14 kcal Atomic # 14 Polarization: -4.89 SS G_CDS: 2.07 Total: -2.82 kcal Atomic # 16 Polarization: 7.44 SS G_CDS: -0.28 Total: 7.16 kcal Total: -29.87 -0.66 -30.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15505408_2726874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.477 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds