Wall clock time and date at job start Mon Mar 8 2021 10:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34719 * 117.00054 * 2 1 4 4 O 1.21463 * 119.99677 * 0.02562 * 3 2 1 5 5 C 1.47730 * 119.99942 * 180.02562 * 3 2 1 6 6 C 1.39607 * 120.14529 * 179.72556 * 5 3 2 7 7 C 1.37972 * 119.84360 * 179.78841 * 6 5 3 8 8 C 1.50696 * 119.92325 * 180.23129 * 7 6 5 9 9 H 1.09005 * 112.85027 * 350.56423 * 8 7 6 10 10 C 1.53775 * 113.61514 * 121.76567 * 8 7 6 11 11 C 1.53776 * 87.08305 * 139.97733 * 10 8 7 12 12 H 1.09000 * 113.61873 * 220.01278 * 11 10 8 13 13 N 1.46502 * 113.61416 * 89.20086 * 11 10 8 14 14 S 1.65603 * 120.00389 * 145.00003 * 13 11 10 15 15 O 1.42099 * 106.40218 * 178.53802 * 14 13 11 16 16 O 1.42096 * 106.39975 * 311.46105 * 14 13 11 17 17 C 1.76200 * 107.21666 * 65.00051 * 14 13 11 18 18 C 1.38237 * 120.00062 * 269.72828 * 17 14 13 19 19 C 1.38238 * 119.99936 * 179.76698 * 18 17 14 20 20 C 1.38231 * 119.99890 * 0.50725 * 19 18 17 21 21 C 1.50701 * 119.99828 * 179.72820 * 20 19 18 22 22 O 1.42899 * 109.47307 * 120.02062 * 21 20 19 23 23 Si 1.86297 * 109.47194 * 0.02562 * 21 20 19 24 24 C 1.38233 * 119.99997 * 359.74349 * 20 19 18 25 25 C 1.38231 * 119.99902 * 90.00252 * 17 14 13 26 26 C 1.53780 * 113.61356 * 219.37324 * 8 7 6 27 27 C 1.38338 * 120.14776 * 0.46839 * 7 6 5 28 28 C 1.38390 * 120.31066 * 359.78422 * 27 7 6 29 29 C 1.37931 * 120.14617 * 359.97438 * 28 27 7 30 30 H 1.09002 * 109.47379 * 59.99614 * 1 2 3 31 31 H 1.09001 * 109.46782 * 299.99697 * 1 2 3 32 32 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.07639 * 0.02562 * 6 5 3 34 34 H 1.09006 * 113.61607 * 254.52858 * 10 8 7 35 35 H 1.09001 * 113.61872 * 25.34528 * 10 8 7 36 36 H 0.97005 * 119.99932 * 325.00213 * 13 11 10 37 37 H 1.08001 * 119.99524 * 0.02562 * 18 17 14 38 38 H 1.08001 * 119.99801 * 180.23209 * 19 18 17 39 39 H 1.08999 * 109.46834 * 240.01915 * 21 20 19 40 40 H 0.96692 * 113.99952 * 300.00079 * 22 21 20 41 41 H 1.48505 * 109.99770 * 58.68706 * 23 21 20 42 42 H 1.48500 * 110.00278 * 180.02562 * 23 21 20 43 43 H 1.08009 * 119.99947 * 179.97438 * 24 20 19 44 44 H 1.07995 * 120.00422 * 0.02562 * 25 17 14 45 45 H 1.09002 * 113.61315 * 334.56953 * 26 8 7 46 46 H 1.08999 * 113.61741 * 105.47092 * 26 8 7 47 47 H 1.08006 * 119.84817 * 179.76781 * 27 7 6 48 48 H 1.07996 * 119.93369 * 179.97438 * 28 27 7 49 49 H 1.07993 * 120.07926 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.1758 2.5199 -0.0064 7 6 5.5540 2.5849 -0.0024 8 6 6.2434 3.9249 -0.0034 9 1 5.5565 4.7542 -0.1720 10 6 7.1813 4.1360 1.1968 11 6 8.1554 4.8107 0.2167 12 1 9.2003 4.5567 0.3952 13 7 7.9373 6.2521 0.0714 14 16 9.2265 7.2657 -0.1587 15 8 8.6889 8.5739 -0.2956 16 8 10.1894 6.9203 0.8274 17 6 9.9405 6.8557 -1.7165 18 6 10.9433 5.9070 -1.7890 19 6 11.5002 5.5819 -3.0118 20 6 11.0616 6.2131 -4.1607 21 6 11.6729 5.8631 -5.4929 22 8 10.6576 5.3663 -6.3672 23 14 12.9791 4.5567 -5.2528 24 6 10.0624 7.1656 -4.0875 25 6 9.5019 7.4870 -2.8654 26 6 7.4964 3.9723 -0.8937 27 6 6.3044 1.4226 -0.0026 28 6 5.6794 0.1879 -0.0021 29 6 4.3024 0.1084 -0.0010 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5912 3.4279 -0.0100 34 1 6.7804 4.8140 1.9503 35 1 7.5615 3.2074 1.6226 36 1 7.0376 6.6128 0.1101 37 1 11.2887 5.4167 -0.8908 38 1 12.2810 4.8379 -3.0689 39 1 12.1252 6.7533 -5.9302 40 1 10.2112 4.5731 -6.0409 41 1 12.3812 3.3495 -4.6281 42 1 13.5902 4.2032 -6.5593 43 1 9.7200 7.6591 -4.9852 44 1 8.7219 8.2317 -2.8082 45 1 7.9641 2.9989 -1.0416 46 1 7.3496 4.5184 -1.8255 47 1 7.3829 1.4791 -0.0033 48 1 6.2712 -0.7156 -0.0027 49 1 3.8159 -0.8557 -0.0011 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15508398_13421422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:12 Heat of formation + Delta-G solvation = -100.548172 kcal Electronic energy + Delta-G solvation = -35155.115211 eV Core-core repulsion = 30335.000033 eV Total energy + Delta-G solvation = -4820.115178 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.76233 -41.06652 -40.78914 -39.24436 -38.26247 -37.93558 -37.40432 -36.89931 -34.53478 -33.12287 -32.41460 -32.29457 -31.88680 -28.74518 -27.35626 -26.89914 -26.30244 -25.12587 -24.19245 -23.09963 -23.02965 -22.09983 -20.93847 -20.36549 -19.44902 -18.89541 -18.53402 -18.25879 -18.14873 -17.37999 -17.34152 -17.14713 -16.90481 -16.55664 -16.44158 -16.18438 -16.13428 -15.91298 -15.54296 -15.17153 -14.93484 -14.85266 -14.67877 -14.56634 -14.55073 -14.29377 -14.02660 -13.84527 -13.78101 -13.51270 -13.40653 -13.15733 -13.13947 -13.07213 -12.88794 -12.74657 -12.62114 -12.57870 -12.11109 -11.95231 -11.90724 -11.81611 -11.80228 -11.67099 -11.36103 -10.90358 -10.68319 -10.46307 -10.23132 -10.15138 -9.85467 -5.11242 -0.77421 -0.42287 -0.39829 0.09791 0.20275 1.07667 1.42961 1.48905 1.64929 1.78463 1.81478 2.25151 2.61675 2.69167 3.12882 3.16753 3.25318 3.35455 3.41039 3.43535 3.60318 3.64387 3.69044 3.70108 3.77004 3.92996 3.95571 3.99796 4.06333 4.13227 4.16718 4.23189 4.24368 4.29224 4.30399 4.46808 4.50984 4.52010 4.53642 4.65723 4.71677 4.74181 4.79760 4.83278 4.84648 4.85975 4.89452 5.14404 5.15102 5.18891 5.20747 5.34223 5.43770 5.59873 5.70795 5.77592 6.18232 6.70803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.507 3.493 4 O -0.504 6.504 5 C -0.124 4.124 6 C -0.050 4.050 7 C -0.082 4.082 8 C -0.073 4.073 9 H 0.103 0.897 10 C -0.133 4.133 11 C 0.123 3.877 12 H 0.109 0.891 13 N -1.098 6.098 14 S 2.696 3.304 15 O -0.953 6.953 16 O -0.950 6.950 17 C -0.673 4.673 18 C -0.015 4.015 19 C -0.138 4.138 20 C -0.061 4.061 21 C -0.085 4.085 22 O -0.525 6.525 23 Si 0.687 3.313 24 C -0.114 4.114 25 C -0.016 4.016 26 C -0.149 4.149 27 C -0.081 4.081 28 C -0.129 4.129 29 C -0.065 4.065 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.421 0.579 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.377 0.623 41 H -0.257 1.257 42 H -0.253 1.253 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 -5.332 -0.501 5.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.393 6.393 5 C -0.125 4.125 6 C -0.068 4.068 7 C -0.082 4.082 8 C -0.092 4.092 9 H 0.121 0.879 10 C -0.172 4.172 11 C 0.015 3.985 12 H 0.127 0.873 13 N -0.856 5.856 14 S 2.785 3.215 15 O -0.943 6.943 16 O -0.940 6.940 17 C -0.760 4.760 18 C -0.034 4.034 19 C -0.156 4.156 20 C -0.062 4.062 21 C -0.194 4.194 22 O -0.331 6.331 23 Si 0.588 3.412 24 C -0.132 4.132 25 C -0.035 4.035 26 C -0.188 4.188 27 C -0.098 4.098 28 C -0.146 4.146 29 C -0.083 4.083 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.155 0.845 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.256 0.744 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.225 0.775 41 H -0.181 1.181 42 H -0.178 1.178 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.149 0.851 48 H 0.152 0.848 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.637 -4.759 -0.492 5.463 hybrid contribution -1.809 -0.600 -0.985 2.145 sum 0.828 -5.360 -1.477 5.621 Atomic orbital electron populations 1.23341 0.75422 1.04110 1.02867 1.86532 1.23985 1.32463 1.84195 1.21240 0.89174 0.81592 0.72780 1.90854 1.66798 1.36046 1.45563 1.19097 0.89013 0.95060 1.09377 1.21177 0.94019 0.96814 0.94826 1.19622 0.92667 0.95085 1.00869 1.21578 0.95632 0.94363 0.97602 0.87929 1.23423 0.95730 1.01637 0.96418 1.21712 1.00459 0.79060 0.97233 0.87268 1.55372 1.24184 1.17145 1.88891 1.01920 0.73015 0.72682 0.73853 1.93628 1.78685 1.35104 1.86916 1.93618 1.60430 1.83943 1.56006 1.30982 1.12639 1.10772 1.21576 1.20895 0.91546 0.92406 0.98534 1.21152 1.00940 1.01111 0.92413 1.20685 0.95289 0.94700 0.95495 1.25208 0.97254 1.07923 0.89051 1.86634 1.52066 1.47740 1.46699 0.94862 0.83505 0.78724 0.84140 1.21188 0.96443 0.97448 0.98170 1.20995 0.96470 0.95008 0.91069 1.23677 0.95925 1.01076 0.98107 1.21322 1.00453 0.91812 0.96259 1.21191 0.94334 0.98175 1.00950 1.21510 0.94043 0.97997 0.94765 0.91635 0.91603 0.87669 0.84505 0.89827 0.88193 0.74383 0.83739 0.84541 0.85722 0.77520 1.18150 1.17819 0.84535 0.83929 0.88410 0.90170 0.85088 0.84843 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.62 9.82 -40.54 -0.40 -1.02 16 3 C 0.51 1.55 7.90 34.61 0.27 1.82 16 4 O -0.50 -2.82 16.14 -19.24 -0.31 -3.13 16 5 C -0.12 -0.16 5.87 -104.98 -0.62 -0.78 16 6 C -0.05 -0.02 9.25 -39.17 -0.36 -0.38 16 7 C -0.08 0.12 5.28 -104.68 -0.55 -0.43 16 8 C -0.07 0.23 3.80 -90.97 -0.35 -0.12 16 9 H 0.10 -0.34 8.06 -51.93 -0.42 -0.76 16 10 C -0.13 0.46 7.33 -25.92 -0.19 0.27 16 11 C 0.12 -0.43 4.51 -67.03 -0.30 -0.73 16 12 H 0.11 -0.46 7.77 -51.93 -0.40 -0.86 16 13 N -1.10 2.90 5.73 -4.12 -0.02 2.88 16 14 S 2.70 0.52 5.71 -107.50 -0.61 -0.09 16 15 O -0.95 -3.17 17.28 -57.17 -0.99 -4.16 16 16 O -0.95 -2.72 16.80 -57.17 -0.96 -3.68 16 17 C -0.67 0.39 5.95 -39.58 -0.24 0.16 16 18 C -0.01 0.02 9.52 -39.58 -0.38 -0.36 16 19 C -0.14 0.26 8.67 -39.58 -0.34 -0.08 16 20 C -0.06 0.08 5.39 -104.63 -0.56 -0.48 16 21 C -0.08 0.14 2.82 36.01 0.10 0.25 16 22 O -0.53 0.16 12.77 -35.23 -0.45 -0.29 16 23 Si 0.69 -1.61 29.79 -169.99 -5.06 -6.68 16 24 C -0.11 0.08 9.61 -39.58 -0.38 -0.30 16 25 C -0.02 0.01 9.52 -39.58 -0.38 -0.37 16 26 C -0.15 0.58 7.27 -25.83 -0.19 0.39 16 27 C -0.08 0.19 8.53 -39.49 -0.34 -0.15 16 28 C -0.13 0.25 10.03 -39.64 -0.40 -0.15 16 29 C -0.06 0.03 9.62 -39.17 -0.38 -0.34 16 30 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 33 H 0.14 0.07 7.64 -52.49 -0.40 -0.33 16 34 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.10 -0.41 7.63 -51.93 -0.40 -0.81 16 36 H 0.42 -1.69 8.80 -34.47 -0.30 -2.00 16 37 H 0.14 -0.44 7.61 -52.49 -0.40 -0.84 16 38 H 0.14 -0.54 4.88 -52.49 -0.26 -0.79 16 39 H 0.13 -0.29 7.96 -51.93 -0.41 -0.70 16 40 H 0.38 -1.21 8.70 45.56 0.40 -0.81 16 41 H -0.26 0.21 7.11 56.52 0.40 0.61 16 42 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 43 H 0.14 -0.19 8.06 -52.48 -0.42 -0.62 16 44 H 0.14 -0.21 7.62 -52.49 -0.40 -0.61 16 45 H 0.10 -0.47 6.39 -51.93 -0.33 -0.81 16 46 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 47 H 0.13 -0.60 6.71 -52.48 -0.35 -0.95 16 48 H 0.13 -0.52 8.06 -52.49 -0.42 -0.95 16 49 H 0.14 -0.22 7.61 -52.49 -0.40 -0.62 16 LS Contribution 423.87 15.07 6.39 6.39 Total: 0.00 -12.13 423.87 -13.16 -25.29 By element: Atomic # 1 Polarization: -8.54 SS G_CDS: -6.23 Total: -14.77 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -4.50 Total: -0.73 kcal Atomic # 7 Polarization: 2.90 SS G_CDS: -0.02 Total: 2.88 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -3.11 Total: -12.28 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.06 Total: -6.68 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -0.61 Total: -0.09 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -12.13 -13.16 -25.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_13421422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.261 kcal (2) G-P(sol) polarization free energy of solvation -12.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds