Wall clock time and date at job start Mon Mar 8 2021 10:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34719 * 117.00054 * 2 1 4 4 O 1.21463 * 119.99677 * 0.02562 * 3 2 1 5 5 C 1.47730 * 119.99942 * 180.02562 * 3 2 1 6 6 C 1.39607 * 120.14529 * 179.72556 * 5 3 2 7 7 C 1.37972 * 119.84360 * 179.78841 * 6 5 3 8 8 C 1.50696 * 119.92325 * 180.23129 * 7 6 5 9 9 H 1.09005 * 112.85027 * 350.56423 * 8 7 6 10 10 C 1.53775 * 113.61514 * 121.76567 * 8 7 6 11 11 C 1.53776 * 87.08305 * 139.97733 * 10 8 7 12 12 H 1.09000 * 113.61873 * 220.01278 * 11 10 8 13 13 N 1.46502 * 113.61416 * 89.20086 * 11 10 8 14 14 S 1.65603 * 120.00389 * 145.00003 * 13 11 10 15 15 O 1.42099 * 106.40218 * 178.53802 * 14 13 11 16 16 O 1.42096 * 106.39975 * 311.46105 * 14 13 11 17 17 C 1.76200 * 107.21666 * 65.00051 * 14 13 11 18 18 C 1.38237 * 120.00062 * 269.72828 * 17 14 13 19 19 C 1.38238 * 119.99936 * 179.76698 * 18 17 14 20 20 C 1.38231 * 119.99890 * 0.50725 * 19 18 17 21 21 C 1.50701 * 119.99828 * 179.72820 * 20 19 18 22 22 O 1.42899 * 109.47307 * 120.02062 * 21 20 19 23 23 Si 1.86297 * 109.47194 * 0.02562 * 21 20 19 24 24 C 1.38233 * 119.99997 * 359.74349 * 20 19 18 25 25 C 1.38231 * 119.99902 * 90.00252 * 17 14 13 26 26 C 1.53780 * 113.61356 * 219.37324 * 8 7 6 27 27 C 1.38338 * 120.14776 * 0.46839 * 7 6 5 28 28 C 1.38390 * 120.31066 * 359.78422 * 27 7 6 29 29 C 1.37931 * 120.14617 * 359.97438 * 28 27 7 30 30 H 1.09002 * 109.47379 * 59.99614 * 1 2 3 31 31 H 1.09001 * 109.46782 * 299.99697 * 1 2 3 32 32 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.07639 * 0.02562 * 6 5 3 34 34 H 1.09006 * 113.61607 * 254.52858 * 10 8 7 35 35 H 1.09001 * 113.61872 * 25.34528 * 10 8 7 36 36 H 0.97005 * 119.99932 * 325.00213 * 13 11 10 37 37 H 1.08001 * 119.99524 * 0.02562 * 18 17 14 38 38 H 1.08001 * 119.99801 * 180.23209 * 19 18 17 39 39 H 1.08999 * 109.46834 * 240.01915 * 21 20 19 40 40 H 0.96692 * 113.99952 * 300.00079 * 22 21 20 41 41 H 1.48505 * 109.99770 * 58.68706 * 23 21 20 42 42 H 1.48500 * 110.00278 * 180.02562 * 23 21 20 43 43 H 1.08009 * 119.99947 * 179.97438 * 24 20 19 44 44 H 1.07995 * 120.00422 * 0.02562 * 25 17 14 45 45 H 1.09002 * 113.61315 * 334.56953 * 26 8 7 46 46 H 1.08999 * 113.61741 * 105.47092 * 26 8 7 47 47 H 1.08006 * 119.84817 * 179.76781 * 27 7 6 48 48 H 1.07996 * 119.93369 * 179.97438 * 28 27 7 49 49 H 1.07993 * 120.07926 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.1758 2.5199 -0.0064 7 6 5.5540 2.5849 -0.0024 8 6 6.2434 3.9249 -0.0034 9 1 5.5565 4.7542 -0.1720 10 6 7.1813 4.1360 1.1968 11 6 8.1554 4.8107 0.2167 12 1 9.2003 4.5567 0.3952 13 7 7.9373 6.2521 0.0714 14 16 9.2265 7.2657 -0.1587 15 8 8.6889 8.5739 -0.2956 16 8 10.1894 6.9203 0.8274 17 6 9.9405 6.8557 -1.7165 18 6 10.9433 5.9070 -1.7890 19 6 11.5002 5.5819 -3.0118 20 6 11.0616 6.2131 -4.1607 21 6 11.6729 5.8631 -5.4929 22 8 10.6576 5.3663 -6.3672 23 14 12.9791 4.5567 -5.2528 24 6 10.0624 7.1656 -4.0875 25 6 9.5019 7.4870 -2.8654 26 6 7.4964 3.9723 -0.8937 27 6 6.3044 1.4226 -0.0026 28 6 5.6794 0.1879 -0.0021 29 6 4.3024 0.1084 -0.0010 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5912 3.4279 -0.0100 34 1 6.7804 4.8140 1.9503 35 1 7.5615 3.2074 1.6226 36 1 7.0376 6.6128 0.1101 37 1 11.2887 5.4167 -0.8908 38 1 12.2810 4.8379 -3.0689 39 1 12.1252 6.7533 -5.9302 40 1 10.2112 4.5731 -6.0409 41 1 12.3812 3.3495 -4.6281 42 1 13.5902 4.2032 -6.5593 43 1 9.7200 7.6591 -4.9852 44 1 8.7219 8.2317 -2.8082 45 1 7.9641 2.9989 -1.0416 46 1 7.3496 4.5184 -1.8255 47 1 7.3829 1.4791 -0.0033 48 1 6.2712 -0.7156 -0.0027 49 1 3.8159 -0.8557 -0.0011 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15508398_13421422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:10 Heat of formation + Delta-G solvation = -102.152978 kcal Electronic energy + Delta-G solvation = -35155.184801 eV Core-core repulsion = 30335.000033 eV Total energy + Delta-G solvation = -4820.184767 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.78335 -40.98658 -40.66403 -39.11687 -38.37417 -37.83728 -37.59387 -37.02193 -34.38395 -33.01737 -32.33683 -32.16444 -31.75387 -28.73435 -27.23674 -26.60045 -26.10348 -25.10887 -24.06229 -22.98864 -22.90161 -22.08031 -20.86080 -20.24684 -19.36315 -18.83001 -18.53272 -18.25985 -18.19707 -17.49413 -17.26850 -17.04784 -16.74686 -16.45200 -16.32854 -16.06679 -15.98147 -15.80149 -15.51085 -14.99610 -14.82024 -14.73413 -14.65561 -14.52872 -14.46277 -14.21933 -13.91849 -13.77287 -13.59553 -13.46962 -13.29173 -13.23214 -13.20276 -13.13061 -12.76911 -12.66079 -12.52334 -12.50662 -11.98125 -11.92575 -11.81469 -11.77388 -11.72617 -11.67746 -11.17393 -10.77956 -10.48259 -10.33778 -10.10946 -10.06540 -9.72598 -4.92961 -0.73776 -0.38330 -0.35040 0.22465 0.31839 1.24393 1.40377 1.57632 1.60135 1.88770 1.95126 2.35259 2.69743 2.72527 3.21890 3.32491 3.48672 3.50328 3.61392 3.62753 3.69228 3.78680 3.86258 3.89982 3.99702 4.11851 4.14612 4.20645 4.22467 4.24607 4.25476 4.29762 4.37492 4.43170 4.45183 4.62569 4.64400 4.72945 4.79455 4.86504 4.87161 4.96298 4.98417 4.99244 5.01778 5.08601 5.13582 5.16273 5.26841 5.27550 5.40812 5.44940 5.59931 5.72941 5.85894 6.01483 6.42279 6.54673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.504 3.496 4 O -0.542 6.542 5 C -0.148 4.148 6 C -0.067 4.067 7 C -0.081 4.081 8 C -0.077 4.077 9 H 0.098 0.902 10 C -0.131 4.131 11 C 0.118 3.882 12 H 0.122 0.878 13 N -1.090 6.090 14 S 2.713 3.287 15 O -0.991 6.991 16 O -0.978 6.978 17 C -0.674 4.674 18 C -0.018 4.018 19 C -0.137 4.137 20 C -0.061 4.061 21 C -0.093 4.093 22 O -0.545 6.545 23 Si 0.766 3.234 24 C -0.124 4.124 25 C -0.028 4.028 26 C -0.141 4.141 27 C -0.074 4.074 28 C -0.127 4.127 29 C -0.070 4.070 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.427 0.573 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.129 0.871 40 H 0.388 0.612 41 H -0.269 1.269 42 H -0.305 1.305 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.116 0.884 46 H 0.077 0.923 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -7.064 -0.351 7.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.352 3.648 4 O -0.434 6.434 5 C -0.149 4.149 6 C -0.086 4.086 7 C -0.081 4.081 8 C -0.096 4.096 9 H 0.116 0.884 10 C -0.170 4.170 11 C 0.010 3.990 12 H 0.140 0.860 13 N -0.851 5.851 14 S 2.805 3.195 15 O -0.981 6.981 16 O -0.968 6.968 17 C -0.763 4.763 18 C -0.037 4.037 19 C -0.155 4.155 20 C -0.062 4.062 21 C -0.201 4.201 22 O -0.353 6.353 23 Si 0.670 3.330 24 C -0.142 4.142 25 C -0.047 4.047 26 C -0.180 4.180 27 C -0.092 4.092 28 C -0.145 4.145 29 C -0.088 4.088 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.264 0.736 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.146 0.854 40 H 0.238 0.762 41 H -0.195 1.195 42 H -0.233 1.233 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.134 0.866 46 H 0.095 0.905 47 H 0.179 0.821 48 H 0.177 0.823 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.384 -6.487 -0.305 7.836 hybrid contribution -2.365 -0.126 -1.101 2.612 sum 2.018 -6.613 -1.406 7.056 Atomic orbital electron populations 1.23580 0.74357 1.05935 1.02542 1.86531 1.25153 1.31852 1.83796 1.21703 0.90046 0.81374 0.71726 1.90820 1.67719 1.37136 1.47697 1.19182 0.88111 0.96188 1.11469 1.21226 0.95094 0.96206 0.96035 1.19794 0.91827 0.96314 1.00183 1.21624 0.95926 0.93537 0.98466 0.88353 1.23464 0.95404 1.02076 0.96084 1.21898 1.01309 0.78190 0.97596 0.85971 1.55129 1.23743 1.17495 1.88692 1.01097 0.72758 0.72003 0.73678 1.93574 1.79353 1.37695 1.87475 1.93576 1.61553 1.84265 1.57382 1.30793 1.13316 1.11499 1.20662 1.21184 0.90998 0.92023 0.99517 1.21396 1.01104 1.01178 0.91845 1.20763 0.95053 0.94492 0.95900 1.25417 0.97246 1.08669 0.88790 1.86604 1.52626 1.48593 1.47476 0.93985 0.81007 0.76885 0.81102 1.21287 0.96908 0.97920 0.98134 1.21093 0.96891 0.95374 0.91338 1.23690 0.95014 1.01737 0.97552 1.21691 1.01903 0.91095 0.94485 1.21530 0.93748 0.99446 0.99735 1.21669 0.94885 0.97563 0.94667 0.92002 0.91971 0.84737 0.85833 0.90448 0.86852 0.73649 0.81937 0.82332 0.85354 0.76240 1.19466 1.23349 0.84398 0.83815 0.86629 0.90469 0.82099 0.82290 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.68 9.82 -56.28 -0.55 -2.24 16 3 C 0.50 4.13 7.90 70.33 0.56 4.69 16 4 O -0.54 -7.61 16.14 19.96 0.32 -7.29 16 5 C -0.15 -0.57 5.87 -20.10 -0.12 -0.69 16 6 C -0.07 -0.15 9.25 22.54 0.21 0.06 16 7 C -0.08 0.28 5.28 -19.90 -0.11 0.17 16 8 C -0.08 0.51 3.80 -11.02 -0.04 0.47 16 9 H 0.10 -0.59 8.06 -2.38 -0.02 -0.60 16 10 C -0.13 1.04 7.33 31.12 0.23 1.27 16 11 C 0.12 -0.96 4.51 45.57 0.21 -0.75 16 12 H 0.12 -1.28 7.77 -2.39 -0.02 -1.30 16 13 N -1.09 5.80 5.73 -166.96 -0.96 4.85 16 14 S 2.71 2.01 5.71 -56.49 -0.32 1.69 16 15 O -0.99 -7.83 17.28 -128.00 -2.21 -10.05 16 16 O -0.98 -5.57 16.80 -128.00 -2.15 -7.72 16 17 C -0.67 0.98 5.95 22.27 0.13 1.11 16 18 C -0.02 0.08 9.52 22.27 0.21 0.29 16 19 C -0.14 0.76 8.67 22.27 0.19 0.96 16 20 C -0.06 0.21 5.39 -19.87 -0.11 0.11 16 21 C -0.09 0.38 2.82 71.24 0.20 0.58 16 22 O -0.54 0.52 12.77 -148.98 -1.90 -1.39 16 23 Si 0.77 -4.34 29.79 68.60 2.04 -2.30 16 24 C -0.12 0.18 9.61 22.27 0.21 0.40 16 25 C -0.03 0.02 9.52 22.27 0.21 0.23 16 26 C -0.14 1.33 7.27 31.18 0.23 1.55 16 27 C -0.07 0.51 8.53 22.33 0.19 0.70 16 28 C -0.13 0.73 10.03 22.23 0.22 0.95 16 29 C -0.07 0.08 9.62 22.54 0.22 0.30 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 0.03 8.14 -2.39 -0.02 0.02 16 32 H 0.13 -0.89 8.14 -2.38 -0.02 -0.91 16 33 H 0.12 0.49 7.64 -2.91 -0.02 0.47 16 34 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 35 H 0.11 -1.19 7.63 -2.39 -0.02 -1.20 16 36 H 0.43 -3.20 8.80 -96.74 -0.85 -4.05 16 37 H 0.16 -1.34 7.61 -2.91 -0.02 -1.36 16 38 H 0.16 -1.67 4.88 -2.91 -0.01 -1.68 16 39 H 0.13 -0.65 7.96 -2.39 -0.02 -0.67 16 40 H 0.39 -2.70 8.70 -74.06 -0.64 -3.35 16 41 H -0.27 0.96 7.11 99.48 0.71 1.67 16 42 H -0.31 -0.94 7.11 99.48 0.71 -0.23 16 43 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 44 H 0.14 -0.25 7.62 -2.91 -0.02 -0.28 16 45 H 0.12 -1.48 6.39 -2.39 -0.02 -1.50 16 46 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 47 H 0.16 -2.10 6.71 -2.91 -0.02 -2.12 16 48 H 0.16 -1.74 8.06 -2.91 -0.02 -1.76 16 49 H 0.15 -0.48 7.61 -2.91 -0.02 -0.50 16 Total: 0.00 -29.60 423.87 -2.12 -31.72 By element: Atomic # 1 Polarization: -20.42 SS G_CDS: -0.44 Total: -20.86 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 4.04 Total: 13.58 kcal Atomic # 7 Polarization: 5.80 SS G_CDS: -0.96 Total: 4.85 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -6.49 Total: -28.69 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.04 Total: -2.30 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -0.32 Total: 1.69 kcal Total: -29.60 -2.12 -31.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_13421422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.428 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds