Wall clock time and date at job start Mon Mar 8 2021 10:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34710 * 117.00111 * 2 1 4 4 O 1.21471 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.47727 * 120.00298 * 180.02562 * 3 2 1 6 6 C 1.39604 * 120.15419 * 180.02562 * 5 3 2 7 7 C 1.37967 * 119.85199 * 179.97438 * 6 5 3 8 8 C 1.50696 * 119.92607 * 179.97438 * 7 6 5 9 9 H 1.08998 * 112.85045 * 348.77889 * 8 7 6 10 10 C 1.53778 * 113.61556 * 119.97850 * 8 7 6 11 11 C 1.53776 * 87.08442 * 139.97796 * 10 8 7 12 12 H 1.08997 * 113.61941 * 220.01952 * 11 10 8 13 13 N 1.46496 * 113.61357 * 89.11384 * 11 10 8 14 14 S 1.65606 * 120.00121 * 145.00197 * 13 11 10 15 15 O 1.42094 * 106.40506 * 178.54254 * 14 13 11 16 16 O 1.42104 * 106.39701 * 311.46213 * 14 13 11 17 17 C 1.76201 * 107.21621 * 64.99959 * 14 13 11 18 18 C 1.33388 * 125.20221 * 179.71950 * 17 14 13 19 19 C 1.50706 * 122.53740 * 0.02562 * 18 17 14 20 20 O 1.42900 * 109.46827 * 75.00051 * 19 18 17 21 21 Si 1.86298 * 109.47180 * 194.99733 * 19 18 17 22 22 C 1.38421 * 114.92417 * 179.86217 * 18 17 14 23 23 C 1.33391 * 114.91578 * 0.43004 * 22 18 17 24 24 S 1.75882 * 125.20308 * 0.02750 * 17 14 13 25 25 C 1.53781 * 113.61295 * 217.47413 * 8 7 6 26 26 C 1.38351 * 120.14562 * 359.97169 * 7 6 5 27 27 C 1.38387 * 120.30372 * 0.30016 * 26 7 6 28 28 C 1.37921 * 120.14919 * 359.44518 * 27 26 7 29 29 H 1.08993 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46468 * 299.99690 * 1 2 3 31 31 H 1.09002 * 109.47068 * 59.99417 * 1 2 3 32 32 H 1.08005 * 120.07682 * 359.97438 * 6 5 3 33 33 H 1.08996 * 113.61625 * 254.53142 * 10 8 7 34 34 H 1.09007 * 113.61066 * 25.34735 * 10 8 7 35 35 H 0.97005 * 120.00521 * 325.00681 * 13 11 10 36 36 H 1.08996 * 109.47439 * 314.99736 * 19 18 17 37 37 H 0.96706 * 113.99392 * 180.02562 * 20 19 18 38 38 H 1.48497 * 110.00190 * 300.00273 * 21 19 18 39 39 H 1.48508 * 109.99844 * 61.31979 * 21 19 18 40 40 H 1.07996 * 122.54238 * 180.20238 * 22 18 17 41 41 H 1.07998 * 125.19734 * 179.79483 * 23 22 18 42 42 H 1.08998 * 113.61342 * 334.56726 * 25 8 7 43 43 H 1.09003 * 113.61605 * 105.47173 * 25 8 7 44 44 H 1.08002 * 119.84349 * 180.02562 * 26 7 6 45 45 H 1.08000 * 119.92487 * 179.71845 * 27 26 7 46 46 H 1.08003 * 120.07489 * 180.27429 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1759 2.5198 0.0000 7 6 5.5541 2.5848 0.0000 8 6 6.2435 3.9248 0.0000 9 1 5.5611 4.7519 -0.1955 10 6 7.1514 4.1505 1.2204 11 6 8.1496 4.8135 0.2568 12 1 9.1897 4.5618 0.4640 13 7 7.9341 6.2526 0.0873 14 16 9.2280 7.2645 -0.1233 15 8 8.6932 8.5703 -0.2907 16 8 10.1659 6.9329 0.8916 17 6 9.9818 6.8351 -1.6569 18 6 11.0546 7.4308 -2.1798 19 6 11.7627 8.5715 -1.4953 20 8 12.5294 8.0675 -0.3998 21 14 12.8952 9.4172 -2.7089 22 6 11.4705 6.9195 -3.3971 23 6 10.7299 5.9145 -3.8669 24 16 9.4301 5.5606 -2.7361 25 6 7.5197 3.9609 -0.8573 26 6 6.3045 1.4225 0.0000 27 6 5.6794 0.1878 -0.0062 28 6 4.3025 0.1084 -0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.5913 3.4280 0.0004 33 1 6.7321 4.8374 1.9555 34 1 7.5208 3.2270 1.6665 35 1 7.0335 6.6128 0.0984 36 1 11.0274 9.2863 -1.1258 37 1 13.0128 8.7483 0.0881 38 1 13.9026 8.4534 -3.2202 39 1 12.1061 9.9736 -3.8373 40 1 12.3273 7.3074 -3.9279 41 1 10.9024 5.3969 -4.7990 42 1 7.9909 2.9858 -0.9801 43 1 7.3977 4.4949 -1.7997 44 1 7.3830 1.4790 0.0004 45 1 6.2712 -0.7156 -0.0107 46 1 3.8160 -0.8558 -0.0013 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15508398_13652106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:16 Heat of formation + Delta-G solvation = -84.409117 kcal Electronic energy + Delta-G solvation = -33967.015567 eV Core-core repulsion = 29236.752478 eV Total energy + Delta-G solvation = -4730.263089 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.078 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.76141 -41.07630 -39.96997 -39.24341 -38.10761 -37.39263 -37.18961 -36.79338 -34.57069 -32.40141 -31.90935 -31.54764 -28.73722 -28.09830 -26.97202 -26.29612 -25.11169 -24.24258 -23.03453 -22.10074 -21.71707 -20.56585 -19.96399 -19.64966 -18.75850 -18.55024 -18.19528 -18.06285 -17.38917 -17.33073 -17.26280 -17.13036 -16.45389 -16.19837 -16.10935 -15.87666 -15.53778 -15.13973 -14.86804 -14.74895 -14.65307 -14.57166 -14.41928 -14.28602 -14.21787 -13.80653 -13.78958 -13.50252 -13.40302 -13.14553 -13.05817 -12.96454 -12.86638 -12.64817 -12.61394 -12.55158 -12.28611 -12.01376 -11.93214 -11.79299 -11.74845 -11.64009 -11.34795 -10.74032 -10.48238 -10.42774 -10.13577 -9.84364 -9.72294 -5.08328 -0.70935 -0.70047 -0.38366 0.17656 0.22162 0.53734 1.12522 1.15611 1.50215 1.58120 1.66042 1.84058 1.85257 2.59214 2.63168 3.18298 3.22443 3.37103 3.43462 3.56368 3.61793 3.69029 3.74912 3.77735 3.81336 3.94482 3.96144 3.99722 4.06139 4.14255 4.17075 4.18100 4.24056 4.30875 4.46945 4.52830 4.54339 4.56997 4.66889 4.72289 4.79767 4.79941 4.83798 4.86418 4.94952 5.15467 5.19910 5.22021 5.35480 5.44926 5.72172 5.75686 6.55143 6.71986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.507 3.493 4 O -0.504 6.504 5 C -0.125 4.125 6 C -0.050 4.050 7 C -0.083 4.083 8 C -0.072 4.072 9 H 0.104 0.896 10 C -0.130 4.130 11 C 0.116 3.884 12 H 0.114 0.886 13 N -1.100 6.100 14 S 2.718 3.282 15 O -0.949 6.949 16 O -0.922 6.922 17 C -0.767 4.767 18 C 0.051 3.949 19 C -0.104 4.104 20 O -0.529 6.529 21 Si 0.709 3.291 22 C -0.164 4.164 23 C -0.168 4.168 24 S 0.218 5.782 25 C -0.153 4.153 26 C -0.080 4.080 27 C -0.128 4.128 28 C -0.065 4.065 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.422 0.578 36 H 0.084 0.916 37 H 0.388 0.612 38 H -0.245 1.245 39 H -0.250 1.250 40 H 0.149 0.851 41 H 0.178 0.822 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -3.141 -1.668 3.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.393 6.393 5 C -0.126 4.126 6 C -0.068 4.068 7 C -0.083 4.083 8 C -0.090 4.090 9 H 0.122 0.878 10 C -0.169 4.169 11 C 0.008 3.992 12 H 0.132 0.868 13 N -0.860 5.860 14 S 2.802 3.198 15 O -0.939 6.939 16 O -0.912 6.912 17 C -0.967 4.967 18 C 0.035 3.965 19 C -0.216 4.216 20 O -0.336 6.336 21 Si 0.608 3.392 22 C -0.194 4.194 23 C -0.306 4.306 24 S 0.484 5.516 25 C -0.193 4.193 26 C -0.098 4.098 27 C -0.146 4.146 28 C -0.083 4.083 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.258 0.742 36 H 0.102 0.898 37 H 0.236 0.764 38 H -0.170 1.170 39 H -0.174 1.174 40 H 0.166 0.834 41 H 0.196 0.804 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.759 -3.898 -2.170 4.525 hybrid contribution 0.008 0.384 -0.789 0.878 sum 0.767 -3.514 -2.959 4.658 Atomic orbital electron populations 1.23340 0.75428 1.04106 1.02864 1.86532 1.23980 1.32471 1.84195 1.21240 0.89178 0.81587 0.72774 1.90856 1.66808 1.36037 1.45576 1.19090 0.89000 0.95054 1.09416 1.21169 0.93992 0.96829 0.94797 1.19603 0.92668 0.95008 1.00976 1.21577 0.95465 0.94494 0.97469 0.87788 1.23404 0.95513 1.01703 0.96289 1.21798 1.01036 0.78883 0.97505 0.86831 1.55426 1.24025 1.17708 1.88838 1.01561 0.72659 0.72628 0.72942 1.93633 1.78660 1.35074 1.86514 1.93666 1.61301 1.83560 1.52624 1.35722 1.16632 1.15141 1.29194 1.17908 0.91624 0.93752 0.93246 1.24915 1.01332 0.96986 0.98362 1.86599 1.65323 1.37434 1.44205 0.94692 0.81425 0.84384 0.78715 1.20202 1.03008 0.99293 0.96855 1.26218 0.99239 1.00945 1.04157 1.84179 1.27872 1.29704 1.09851 1.23767 0.96225 1.01322 0.97940 1.21344 1.00515 0.91803 0.96170 1.21190 0.94324 0.98181 1.00921 1.21511 0.94045 0.97992 0.94736 0.87672 0.91614 0.91629 0.84483 0.89707 0.88017 0.74184 0.89790 0.76351 1.16972 1.17425 0.83404 0.80449 0.87775 0.90092 0.85003 0.84818 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.64 9.82 -40.52 -0.40 -1.04 16 3 C 0.51 1.58 7.90 34.61 0.27 1.85 16 4 O -0.50 -2.85 16.14 -19.24 -0.31 -3.16 16 5 C -0.12 -0.17 5.87 -104.98 -0.62 -0.78 16 6 C -0.05 -0.03 9.25 -39.17 -0.36 -0.39 16 7 C -0.08 0.11 5.28 -104.68 -0.55 -0.44 16 8 C -0.07 0.19 3.80 -90.96 -0.35 -0.15 16 9 H 0.10 -0.33 8.06 -51.93 -0.42 -0.75 16 10 C -0.13 0.36 7.33 -25.92 -0.19 0.17 16 11 C 0.12 -0.24 3.90 -67.12 -0.26 -0.50 16 12 H 0.11 -0.23 7.77 -51.93 -0.40 -0.63 16 13 N -1.10 1.09 5.54 -4.20 -0.02 1.06 16 14 S 2.72 7.18 5.04 -107.50 -0.54 6.63 16 15 O -0.95 -4.77 17.48 -57.17 -1.00 -5.77 16 16 O -0.92 -4.84 16.98 -59.41 -1.01 -5.85 16 17 C -0.77 -1.85 6.46 29.04 0.19 -1.66 16 18 C 0.05 0.15 5.16 -106.25 -0.55 -0.39 16 19 C -0.10 -0.18 2.32 36.01 0.08 -0.09 16 20 O -0.53 -0.97 12.29 -35.88 -0.44 -1.41 16 21 Si 0.71 -0.53 30.42 -169.99 -5.17 -5.70 16 22 C -0.16 -0.28 8.74 -41.21 -0.36 -0.64 16 23 C -0.17 0.02 11.23 29.04 0.33 0.34 16 24 S 0.22 -0.10 19.55 -107.50 -2.10 -2.20 16 25 C -0.15 0.49 6.19 -25.92 -0.16 0.33 16 26 C -0.08 0.18 8.60 -39.48 -0.34 -0.16 16 27 C -0.13 0.23 10.03 -39.64 -0.40 -0.16 16 28 C -0.06 0.03 9.62 -39.17 -0.38 -0.35 16 29 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 30 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.14 0.08 7.65 -52.48 -0.40 -0.32 16 33 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 34 H 0.10 -0.36 7.72 -51.93 -0.40 -0.76 16 35 H 0.42 -1.21 8.79 -34.47 -0.30 -1.51 16 36 H 0.08 0.10 7.23 -51.93 -0.38 -0.27 16 37 H 0.39 -1.30 8.74 45.56 0.40 -0.90 16 38 H -0.25 -0.30 6.86 56.52 0.39 0.09 16 39 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 40 H 0.15 0.10 5.57 -52.49 -0.29 -0.19 16 41 H 0.18 -0.54 8.06 -52.49 -0.42 -0.96 16 42 H 0.10 -0.47 6.30 -51.93 -0.33 -0.80 16 43 H 0.08 -0.26 6.24 -51.93 -0.32 -0.59 16 44 H 0.13 -0.57 6.64 -52.49 -0.35 -0.92 16 45 H 0.13 -0.51 8.06 -52.49 -0.42 -0.93 16 46 H 0.14 -0.21 7.61 -52.48 -0.40 -0.61 16 LS Contribution 406.49 15.07 6.13 6.13 Total: 0.00 -12.80 406.49 -12.79 -25.59 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -5.34 Total: -12.31 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.58 Total: -1.98 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -0.02 Total: 1.06 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -3.16 Total: -17.22 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: -5.17 Total: -5.70 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -2.64 Total: 4.43 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -12.80 -12.79 -25.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_13652106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.824 kcal (2) G-P(sol) polarization free energy of solvation -12.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds