Wall clock time and date at job start Mon Mar 8 2021 10:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34710 * 117.00111 * 2 1 4 4 O 1.21471 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.47727 * 120.00298 * 180.02562 * 3 2 1 6 6 C 1.39604 * 120.15419 * 180.02562 * 5 3 2 7 7 C 1.37967 * 119.85199 * 179.97438 * 6 5 3 8 8 C 1.50696 * 119.92607 * 179.97438 * 7 6 5 9 9 H 1.08998 * 112.85045 * 348.77889 * 8 7 6 10 10 C 1.53778 * 113.61556 * 119.97850 * 8 7 6 11 11 C 1.53776 * 87.08442 * 139.97796 * 10 8 7 12 12 H 1.08997 * 113.61941 * 220.01952 * 11 10 8 13 13 N 1.46496 * 113.61357 * 89.11384 * 11 10 8 14 14 S 1.65606 * 120.00121 * 145.00197 * 13 11 10 15 15 O 1.42094 * 106.40506 * 178.54254 * 14 13 11 16 16 O 1.42104 * 106.39701 * 311.46213 * 14 13 11 17 17 C 1.76201 * 107.21621 * 64.99959 * 14 13 11 18 18 C 1.33388 * 125.20221 * 179.71950 * 17 14 13 19 19 C 1.50706 * 122.53740 * 0.02562 * 18 17 14 20 20 O 1.42900 * 109.46827 * 75.00051 * 19 18 17 21 21 Si 1.86298 * 109.47180 * 194.99733 * 19 18 17 22 22 C 1.38421 * 114.92417 * 179.86217 * 18 17 14 23 23 C 1.33391 * 114.91578 * 0.43004 * 22 18 17 24 24 S 1.75882 * 125.20308 * 0.02750 * 17 14 13 25 25 C 1.53781 * 113.61295 * 217.47413 * 8 7 6 26 26 C 1.38351 * 120.14562 * 359.97169 * 7 6 5 27 27 C 1.38387 * 120.30372 * 0.30016 * 26 7 6 28 28 C 1.37921 * 120.14919 * 359.44518 * 27 26 7 29 29 H 1.08993 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46468 * 299.99690 * 1 2 3 31 31 H 1.09002 * 109.47068 * 59.99417 * 1 2 3 32 32 H 1.08005 * 120.07682 * 359.97438 * 6 5 3 33 33 H 1.08996 * 113.61625 * 254.53142 * 10 8 7 34 34 H 1.09007 * 113.61066 * 25.34735 * 10 8 7 35 35 H 0.97005 * 120.00521 * 325.00681 * 13 11 10 36 36 H 1.08996 * 109.47439 * 314.99736 * 19 18 17 37 37 H 0.96706 * 113.99392 * 180.02562 * 20 19 18 38 38 H 1.48497 * 110.00190 * 300.00273 * 21 19 18 39 39 H 1.48508 * 109.99844 * 61.31979 * 21 19 18 40 40 H 1.07996 * 122.54238 * 180.20238 * 22 18 17 41 41 H 1.07998 * 125.19734 * 179.79483 * 23 22 18 42 42 H 1.08998 * 113.61342 * 334.56726 * 25 8 7 43 43 H 1.09003 * 113.61605 * 105.47173 * 25 8 7 44 44 H 1.08002 * 119.84349 * 180.02562 * 26 7 6 45 45 H 1.08000 * 119.92487 * 179.71845 * 27 26 7 46 46 H 1.08003 * 120.07489 * 180.27429 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1759 2.5198 0.0000 7 6 5.5541 2.5848 0.0000 8 6 6.2435 3.9248 0.0000 9 1 5.5611 4.7519 -0.1955 10 6 7.1514 4.1505 1.2204 11 6 8.1496 4.8135 0.2568 12 1 9.1897 4.5618 0.4640 13 7 7.9341 6.2526 0.0873 14 16 9.2280 7.2645 -0.1233 15 8 8.6932 8.5703 -0.2907 16 8 10.1659 6.9329 0.8916 17 6 9.9818 6.8351 -1.6569 18 6 11.0546 7.4308 -2.1798 19 6 11.7627 8.5715 -1.4953 20 8 12.5294 8.0675 -0.3998 21 14 12.8952 9.4172 -2.7089 22 6 11.4705 6.9195 -3.3971 23 6 10.7299 5.9145 -3.8669 24 16 9.4301 5.5606 -2.7361 25 6 7.5197 3.9609 -0.8573 26 6 6.3045 1.4225 0.0000 27 6 5.6794 0.1878 -0.0062 28 6 4.3025 0.1084 -0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.5913 3.4280 0.0004 33 1 6.7321 4.8374 1.9555 34 1 7.5208 3.2270 1.6665 35 1 7.0335 6.6128 0.0984 36 1 11.0274 9.2863 -1.1258 37 1 13.0128 8.7483 0.0881 38 1 13.9026 8.4534 -3.2202 39 1 12.1061 9.9736 -3.8373 40 1 12.3273 7.3074 -3.9279 41 1 10.9024 5.3969 -4.7990 42 1 7.9909 2.9858 -0.9801 43 1 7.3977 4.4949 -1.7997 44 1 7.3830 1.4790 0.0004 45 1 6.2712 -0.7156 -0.0107 46 1 3.8160 -0.8558 -0.0013 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15508398_13652106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:14 Heat of formation + Delta-G solvation = -87.866103 kcal Electronic energy + Delta-G solvation = -33967.165474 eV Core-core repulsion = 29236.752478 eV Total energy + Delta-G solvation = -4730.412995 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.078 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.78622 -41.04581 -40.00443 -39.15820 -38.38025 -37.58244 -37.26959 -37.05222 -34.51679 -32.33416 -31.82712 -31.57049 -28.72897 -28.16727 -26.73857 -26.15098 -25.10921 -24.26930 -22.92423 -22.11526 -21.81237 -20.52690 -19.99127 -19.72130 -18.76044 -18.62139 -18.30782 -18.15166 -17.48237 -17.42617 -17.24526 -17.04406 -16.45491 -16.25665 -16.01826 -15.91735 -15.57561 -15.00796 -14.80635 -14.74955 -14.66580 -14.55480 -14.47790 -14.30906 -14.22066 -13.82458 -13.66591 -13.56672 -13.35260 -13.28834 -13.25251 -13.12624 -12.77896 -12.72730 -12.62776 -12.54524 -12.34990 -12.00834 -11.91488 -11.79333 -11.77087 -11.63683 -11.23580 -10.63530 -10.53057 -10.47496 -10.05782 -9.74089 -9.69521 -5.02906 -0.86278 -0.76125 -0.37386 0.15803 0.32287 0.54034 1.09183 1.14154 1.41356 1.60768 1.61204 1.79605 1.84609 2.43287 2.70145 3.20577 3.37524 3.43921 3.58493 3.60700 3.62346 3.76158 3.79881 3.88091 3.92181 3.94368 4.08718 4.13790 4.17324 4.18723 4.22869 4.25604 4.29730 4.42391 4.53869 4.62911 4.66837 4.77231 4.77934 4.82056 4.89974 4.92790 4.98631 5.00473 5.07494 5.16722 5.27464 5.38672 5.41871 5.57843 5.86082 5.89374 6.55885 6.73388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.505 3.495 4 O -0.542 6.542 5 C -0.148 4.148 6 C -0.065 4.065 7 C -0.081 4.081 8 C -0.071 4.071 9 H 0.104 0.896 10 C -0.127 4.127 11 C 0.106 3.894 12 H 0.115 0.885 13 N -1.090 6.090 14 S 2.731 3.269 15 O -0.982 6.982 16 O -0.955 6.955 17 C -0.794 4.794 18 C 0.026 3.974 19 C -0.129 4.129 20 O -0.548 6.548 21 Si 0.803 3.197 22 C -0.190 4.190 23 C -0.163 4.163 24 S 0.265 5.735 25 C -0.148 4.148 26 C -0.074 4.074 27 C -0.127 4.127 28 C -0.068 4.068 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.431 0.569 36 H 0.079 0.921 37 H 0.406 0.594 38 H -0.270 1.270 39 H -0.281 1.281 40 H 0.152 0.848 41 H 0.209 0.791 42 H 0.125 0.875 43 H 0.083 0.917 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -4.948 -2.440 6.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.352 3.648 4 O -0.433 6.433 5 C -0.149 4.149 6 C -0.083 4.083 7 C -0.081 4.081 8 C -0.090 4.090 9 H 0.122 0.878 10 C -0.166 4.166 11 C -0.002 4.002 12 H 0.132 0.868 13 N -0.853 5.853 14 S 2.817 3.183 15 O -0.972 6.972 16 O -0.944 6.944 17 C -0.995 4.995 18 C 0.009 3.991 19 C -0.238 4.238 20 O -0.359 6.359 21 Si 0.703 3.297 22 C -0.219 4.219 23 C -0.300 4.300 24 S 0.532 5.468 25 C -0.187 4.187 26 C -0.092 4.092 27 C -0.144 4.144 28 C -0.087 4.087 29 H 0.152 0.848 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.269 0.731 36 H 0.097 0.903 37 H 0.257 0.743 38 H -0.196 1.196 39 H -0.208 1.208 40 H 0.170 0.830 41 H 0.226 0.774 42 H 0.143 0.857 43 H 0.101 0.899 44 H 0.178 0.822 45 H 0.177 0.823 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.802 -5.708 -2.889 6.646 hybrid contribution -0.380 0.826 -0.565 1.070 sum 1.422 -4.882 -3.454 6.147 Atomic orbital electron populations 1.23579 0.74360 1.05928 1.02545 1.86530 1.25151 1.31876 1.83798 1.21696 0.90040 0.81370 0.71731 1.90823 1.67721 1.37113 1.47685 1.19171 0.88100 0.96166 1.11465 1.21216 0.94981 0.96276 0.95834 1.19727 0.91860 0.96052 1.00459 1.21588 0.95618 0.93951 0.97821 0.87801 1.23444 0.95015 1.02058 0.96086 1.21999 1.01446 0.77998 0.98740 0.86751 1.55145 1.23490 1.18094 1.88593 1.00786 0.72562 0.72213 0.72722 1.93579 1.79221 1.37400 1.86994 1.93617 1.62622 1.83979 1.54217 1.35657 1.17229 1.16904 1.29731 1.18294 0.92205 0.94504 0.94107 1.25334 1.02225 0.97069 0.99215 1.86545 1.65639 1.38975 1.44700 0.93627 0.78407 0.81979 0.75640 1.20331 1.04066 1.00572 0.96960 1.26701 0.98397 0.99954 1.04978 1.83898 1.26847 1.27718 1.08319 1.23832 0.95475 1.01990 0.97428 1.21700 1.01890 0.91159 0.94459 1.21516 0.93765 0.99398 0.99737 1.21669 0.94843 0.97594 0.94545 0.84757 0.91995 0.91968 0.85645 0.90092 0.86681 0.73121 0.90299 0.74270 1.19580 1.20765 0.83043 0.77426 0.85725 0.89902 0.82197 0.82324 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.63 9.82 -56.20 -0.55 -2.18 16 3 C 0.50 4.00 7.90 70.33 0.56 4.55 16 4 O -0.54 -7.45 16.14 19.93 0.32 -7.13 16 5 C -0.15 -0.53 5.87 -20.10 -0.12 -0.64 16 6 C -0.06 -0.12 9.25 22.54 0.21 0.09 16 7 C -0.08 0.28 5.28 -19.90 -0.11 0.18 16 8 C -0.07 0.45 3.80 -11.02 -0.04 0.40 16 9 H 0.10 -0.65 8.06 -2.39 -0.02 -0.67 16 10 C -0.13 0.83 7.33 31.12 0.23 1.05 16 11 C 0.11 -0.52 3.90 45.52 0.18 -0.34 16 12 H 0.11 -0.54 7.77 -2.39 -0.02 -0.56 16 13 N -1.09 1.75 5.54 -167.21 -0.93 0.82 16 14 S 2.73 17.94 5.04 -56.49 -0.28 17.65 16 15 O -0.98 -11.79 17.48 -128.00 -2.24 -14.02 16 16 O -0.95 -11.50 16.98 -125.86 -2.14 -13.64 16 17 C -0.79 -4.29 6.46 66.72 0.43 -3.86 16 18 C 0.03 0.18 5.16 -20.92 -0.11 0.07 16 19 C -0.13 -0.60 2.32 71.24 0.17 -0.44 16 20 O -0.55 -2.71 12.29 -148.36 -1.82 -4.54 16 21 Si 0.80 -0.74 30.42 68.60 2.09 1.35 16 22 C -0.19 -0.66 8.74 21.22 0.19 -0.47 16 23 C -0.16 0.24 11.23 66.72 0.75 0.99 16 24 S 0.27 -0.52 19.55 -56.49 -1.10 -1.63 16 25 C -0.15 1.21 6.19 31.12 0.19 1.40 16 26 C -0.07 0.50 8.60 22.33 0.19 0.69 16 27 C -0.13 0.72 10.03 22.23 0.22 0.94 16 28 C -0.07 0.09 9.62 22.54 0.22 0.31 16 29 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.13 0.42 7.65 -2.91 -0.02 0.40 16 33 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.11 -1.03 7.72 -2.38 -0.02 -1.05 16 35 H 0.43 -2.22 8.79 -96.74 -0.85 -3.07 16 36 H 0.08 0.36 7.23 -2.39 -0.02 0.34 16 37 H 0.41 -2.27 8.74 -74.05 -0.65 -2.92 16 38 H -0.27 -0.76 6.86 99.48 0.68 -0.08 16 39 H -0.28 -1.09 7.11 99.48 0.71 -0.39 16 40 H 0.15 0.25 5.57 -2.91 -0.02 0.24 16 41 H 0.21 -1.78 8.06 -2.91 -0.02 -1.80 16 42 H 0.12 -1.52 6.30 -2.39 -0.02 -1.53 16 43 H 0.08 -0.68 6.24 -2.39 -0.01 -0.69 16 44 H 0.16 -2.00 6.64 -2.91 -0.02 -2.02 16 45 H 0.16 -1.71 8.06 -2.91 -0.02 -1.73 16 46 H 0.15 -0.50 7.61 -2.91 -0.02 -0.53 16 Total: 0.00 -31.88 406.49 -2.72 -34.60 By element: Atomic # 1 Polarization: -17.00 SS G_CDS: -0.42 Total: -17.41 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 4.35 Total: 6.11 kcal Atomic # 7 Polarization: 1.75 SS G_CDS: -0.93 Total: 0.82 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -6.43 Total: -41.50 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.09 Total: 1.35 kcal Atomic # 16 Polarization: 17.42 SS G_CDS: -1.39 Total: 16.03 kcal Total: -31.88 -2.72 -34.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_13652106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.263 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds