Wall clock time and date at job start Mon Mar 8 2021 10:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34712 * 116.99630 * 2 1 4 4 O 1.21469 * 120.00470 * 359.97438 * 3 2 1 5 5 C 1.47728 * 119.99672 * 180.02562 * 3 2 1 6 6 C 1.39610 * 120.14990 * 179.97438 * 5 3 2 7 7 C 1.37964 * 119.84446 * 179.97438 * 6 5 3 8 8 C 1.50705 * 119.92296 * 180.02562 * 7 6 5 9 9 H 1.09004 * 112.84815 * 348.79766 * 8 7 6 10 10 C 1.53779 * 113.61853 * 119.99756 * 8 7 6 11 11 C 1.53780 * 87.08147 * 140.06446 * 10 8 7 12 12 H 1.08996 * 113.61503 * 219.93589 * 11 10 8 13 13 N 1.46498 * 113.61362 * 89.11556 * 11 10 8 14 14 S 1.65602 * 119.99612 * 144.72117 * 13 11 10 15 15 O 1.42104 * 106.40175 * 178.81816 * 14 13 11 16 16 O 1.42095 * 106.40656 * 311.73868 * 14 13 11 17 17 C 1.76203 * 107.21635 * 65.28001 * 14 13 11 18 18 C 1.33389 * 122.53640 * 90.02520 * 17 14 13 19 19 S 1.75888 * 109.59047 * 180.02562 * 18 17 14 20 20 C 1.75884 * 90.96938 * 359.97438 * 19 18 17 21 21 C 1.50706 * 125.20315 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46858 * 244.97676 * 21 20 19 23 23 Si 1.86305 * 109.46945 * 4.97181 * 21 20 19 24 24 C 1.33387 * 109.59419 * 359.72994 * 20 19 18 25 25 C 1.53782 * 113.68795 * 217.53608 * 8 7 6 26 26 C 1.38343 * 120.15624 * 0.26911 * 7 6 5 27 27 C 1.38393 * 120.29828 * 359.45784 * 26 7 6 28 28 C 1.37924 * 120.15143 * 0.53980 * 27 26 7 29 29 H 1.09000 * 109.47264 * 60.00000 * 1 2 3 30 30 H 1.08996 * 109.47476 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47235 * 300.00716 * 1 2 3 32 32 H 1.07994 * 120.07681 * 359.97438 * 6 5 3 33 33 H 1.09006 * 113.61211 * 25.51721 * 10 8 7 34 34 H 1.08995 * 113.61220 * 254.61728 * 10 8 7 35 35 H 0.97001 * 120.00384 * 325.00595 * 13 11 10 36 36 H 1.08002 * 125.20784 * 0.02562 * 18 17 14 37 37 H 1.08994 * 109.47512 * 124.96886 * 21 20 19 38 38 H 0.96694 * 114.00628 * 59.99168 * 22 21 20 39 39 H 1.48495 * 109.99944 * 180.02562 * 23 21 20 40 40 H 1.48501 * 109.99831 * 301.32120 * 23 21 20 41 41 H 1.08000 * 122.54289 * 180.24521 * 24 20 19 42 42 H 1.09006 * 113.61251 * 105.46237 * 25 8 7 43 43 H 1.08991 * 113.61651 * 334.54946 * 25 8 7 44 44 H 1.07992 * 119.85273 * 179.72311 * 26 7 6 45 45 H 1.08001 * 119.92268 * 180.25318 * 27 26 7 46 46 H 1.08003 * 120.08017 * 179.74906 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.1758 2.5199 -0.0011 7 6 5.5540 2.5848 -0.0011 8 6 6.2435 3.9249 -0.0011 9 1 5.5609 4.7521 -0.1963 10 6 7.1517 4.1504 1.2191 11 6 8.1486 4.8156 0.2555 12 1 9.1892 4.5660 0.4629 13 7 7.9313 6.2546 0.0876 14 16 9.2244 7.2690 -0.1157 15 8 8.6883 8.5752 -0.2767 16 8 10.1614 6.9331 0.8983 17 6 9.9805 6.8489 -1.6508 18 6 9.6260 7.4171 -2.8044 19 16 10.5932 6.7489 -4.1127 20 6 11.4504 5.7052 -2.9860 21 6 12.5413 4.7346 -3.3588 22 8 12.0991 3.4000 -3.1031 23 14 12.9449 4.9191 -5.1682 24 6 10.9917 5.9089 -1.7501 25 6 7.5191 3.9633 -0.8591 26 6 6.3044 1.4226 -0.0062 27 6 5.6794 0.1879 0.0000 28 6 4.3024 0.1084 0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.5912 3.4280 -0.0015 33 1 7.5236 3.2270 1.6632 34 1 6.7319 4.8361 1.9550 35 1 7.0303 6.6138 0.0996 36 1 8.8619 8.1720 -2.9178 37 1 13.4313 4.9426 -2.7650 38 1 11.3090 3.1455 -3.5989 39 1 14.0189 3.9668 -5.5486 40 1 11.7316 4.6691 -5.9872 41 1 11.3770 5.3775 -0.8925 42 1 7.3959 4.4982 -1.8009 43 1 7.9914 2.9889 -0.9831 44 1 7.3828 1.4791 -0.0107 45 1 6.2712 -0.7155 0.0001 46 1 3.8159 -0.8558 0.0008 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15508398_15065232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:25 Heat of formation + Delta-G solvation = -94.191663 kcal Electronic energy + Delta-G solvation = -33721.464031 eV Core-core repulsion = 28990.776739 eV Total energy + Delta-G solvation = -4730.687292 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.078 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.78246 -40.99097 -39.48117 -39.11419 -38.36380 -37.61411 -37.58801 -37.02332 -34.38580 -32.34014 -31.81207 -31.75744 -28.73217 -27.18048 -26.63267 -26.10090 -25.11173 -24.88641 -22.91049 -22.08935 -21.44117 -20.59834 -20.09140 -19.22772 -18.86991 -18.48387 -18.22523 -17.86264 -17.64142 -17.48913 -17.06502 -16.93905 -16.36752 -16.32605 -15.98846 -15.89834 -15.48911 -15.04535 -14.90301 -14.73565 -14.65445 -14.49711 -14.25818 -14.18913 -14.09246 -13.82120 -13.61811 -13.47574 -13.32492 -13.25102 -13.20841 -13.12647 -12.93079 -12.76139 -12.53112 -12.50000 -12.30262 -11.92126 -11.84145 -11.77675 -11.72488 -11.52511 -11.18557 -10.77631 -10.48773 -10.18668 -10.06865 -9.79513 -9.72978 -5.05979 -0.78539 -0.43704 -0.38440 0.31604 0.37292 0.62703 1.02368 1.20105 1.40464 1.50308 1.60428 1.86434 2.04672 2.68999 2.70020 3.20770 3.35949 3.48462 3.61073 3.61414 3.64842 3.70068 3.89536 3.94059 3.98913 4.10368 4.14235 4.19161 4.23550 4.25095 4.29170 4.30547 4.42344 4.51923 4.62628 4.66851 4.73572 4.79006 4.86096 4.93837 4.97221 4.98591 5.07571 5.09548 5.12138 5.16481 5.26489 5.40762 5.43853 5.59866 5.85326 6.02554 6.42599 6.55049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.505 3.495 4 O -0.541 6.541 5 C -0.148 4.148 6 C -0.066 4.066 7 C -0.081 4.081 8 C -0.075 4.075 9 H 0.102 0.898 10 C -0.132 4.132 11 C 0.119 3.881 12 H 0.114 0.886 13 N -1.088 6.088 14 S 2.728 3.272 15 O -0.986 6.986 16 O -0.981 6.981 17 C -0.689 4.689 18 C -0.086 4.086 19 S 0.181 5.819 20 C -0.228 4.228 21 C -0.036 4.036 22 O -0.535 6.535 23 Si 0.710 3.290 24 C -0.052 4.052 25 C -0.139 4.139 26 C -0.075 4.075 27 C -0.127 4.127 28 C -0.069 4.069 29 H 0.062 0.938 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.428 0.572 36 H 0.200 0.800 37 H 0.136 0.864 38 H 0.389 0.611 39 H -0.274 1.274 40 H -0.256 1.256 41 H 0.157 0.843 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -4.253 -3.863 5.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.352 3.648 4 O -0.433 6.433 5 C -0.149 4.149 6 C -0.084 4.084 7 C -0.081 4.081 8 C -0.093 4.093 9 H 0.120 0.880 10 C -0.172 4.172 11 C 0.011 3.989 12 H 0.132 0.868 13 N -0.849 5.849 14 S 2.817 3.183 15 O -0.976 6.976 16 O -0.971 6.971 17 C -0.790 4.790 18 C -0.225 4.225 19 S 0.445 5.555 20 C -0.346 4.346 21 C -0.148 4.148 22 O -0.343 6.343 23 Si 0.612 3.388 24 C -0.081 4.081 25 C -0.178 4.178 26 C -0.093 4.093 27 C -0.145 4.145 28 C -0.087 4.087 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.265 0.735 36 H 0.217 0.783 37 H 0.154 0.846 38 H 0.238 0.762 39 H -0.200 1.200 40 H -0.181 1.181 41 H 0.174 0.826 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.176 0.824 45 H 0.176 0.824 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.290 -3.543 -5.264 6.746 hybrid contribution -1.903 -0.943 1.139 2.410 sum 0.387 -4.486 -4.125 6.106 Atomic orbital electron populations 1.23580 0.74343 1.05927 1.02562 1.86532 1.25166 1.31858 1.83791 1.21681 0.90006 0.81382 0.71736 1.90821 1.67703 1.37100 1.47679 1.19184 0.88143 0.96161 1.11423 1.21222 0.94996 0.96255 0.95926 1.19781 0.91871 0.96238 1.00201 1.21621 0.95863 0.93620 0.98231 0.87985 1.23467 0.95557 1.01969 0.96169 1.21808 1.00945 0.78387 0.97742 0.86771 1.55090 1.23380 1.17639 1.88752 1.00739 0.72533 0.71878 0.73179 1.93577 1.79305 1.37421 1.87297 1.93570 1.63249 1.84485 1.55804 1.29781 1.15195 1.13305 1.20768 1.26183 1.01299 1.00193 0.94844 1.84426 1.29396 1.32241 1.09478 1.25062 1.06325 1.06335 0.96871 1.24497 0.96317 0.80643 1.13330 1.86619 1.50158 1.27969 1.69587 0.94400 0.80873 0.90868 0.72665 1.19668 0.94355 0.95775 0.98301 1.23635 0.94844 1.01539 0.97777 1.21681 1.01801 0.91220 0.94565 1.21516 0.93806 0.99384 0.99804 1.21664 0.94806 0.97621 0.94652 0.91952 0.84770 0.91973 0.85637 0.87228 0.90344 0.73494 0.78307 0.84600 0.76172 1.19969 1.18110 0.82584 0.90112 0.86909 0.82404 0.82427 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.68 9.82 -56.22 -0.55 -2.23 16 3 C 0.50 4.09 7.90 70.33 0.56 4.64 16 4 O -0.54 -7.48 16.14 19.94 0.32 -7.16 16 5 C -0.15 -0.58 5.87 -20.10 -0.12 -0.70 16 6 C -0.07 -0.15 9.25 22.54 0.21 0.06 16 7 C -0.08 0.25 5.28 -19.90 -0.11 0.14 16 8 C -0.08 0.47 3.79 -11.01 -0.04 0.43 16 9 H 0.10 -0.65 8.05 -2.38 -0.02 -0.67 16 10 C -0.13 0.90 7.33 31.12 0.23 1.13 16 11 C 0.12 -0.80 4.51 45.52 0.21 -0.59 16 12 H 0.11 -0.82 7.76 -2.39 -0.02 -0.84 16 13 N -1.09 5.38 5.73 -167.20 -0.96 4.42 16 14 S 2.73 3.26 5.77 -56.49 -0.33 2.94 16 15 O -0.99 -6.95 17.64 -128.00 -2.26 -9.21 16 16 O -0.98 -7.55 17.14 -128.00 -2.19 -9.74 16 17 C -0.69 0.96 5.87 21.21 0.12 1.08 16 18 C -0.09 0.30 10.70 66.72 0.71 1.01 16 19 S 0.18 -0.85 20.60 -56.49 -1.16 -2.01 16 20 C -0.23 0.73 5.70 24.59 0.14 0.87 16 21 C -0.04 0.14 2.96 71.24 0.21 0.35 16 22 O -0.53 1.33 12.88 -148.98 -1.92 -0.58 16 23 Si 0.71 -3.05 30.98 68.60 2.13 -0.93 16 24 C -0.05 0.08 9.59 21.21 0.20 0.28 16 25 C -0.14 1.21 7.25 31.12 0.23 1.44 16 26 C -0.08 0.45 8.62 22.33 0.19 0.64 16 27 C -0.13 0.64 10.03 22.23 0.22 0.86 16 28 C -0.07 0.06 9.62 22.54 0.22 0.28 16 29 H 0.06 0.02 8.14 -2.39 -0.02 0.01 16 30 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.13 0.45 7.64 -2.91 -0.02 0.43 16 33 H 0.11 -0.94 7.73 -2.38 -0.02 -0.96 16 34 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.43 -3.36 8.78 -96.74 -0.85 -4.20 16 36 H 0.20 -1.40 8.00 -2.91 -0.02 -1.42 16 37 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 38 H 0.39 -3.33 8.70 -74.06 -0.64 -3.97 16 39 H -0.27 -0.70 7.11 99.48 0.71 0.00 16 40 H -0.26 0.41 7.11 99.48 0.71 1.12 16 41 H 0.16 -0.29 7.96 -2.91 -0.02 -0.31 16 42 H 0.08 -0.68 8.14 -2.38 -0.02 -0.70 16 43 H 0.11 -1.29 6.30 -2.39 -0.02 -1.31 16 44 H 0.16 -1.81 6.63 -2.91 -0.02 -1.83 16 45 H 0.16 -1.57 8.06 -2.91 -0.02 -1.60 16 46 H 0.15 -0.44 7.61 -2.91 -0.02 -0.46 16 Total: 0.00 -27.24 417.64 -2.94 -30.18 By element: Atomic # 1 Polarization: -18.40 SS G_CDS: -0.40 Total: -18.80 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 4.38 Total: 13.12 kcal Atomic # 7 Polarization: 5.38 SS G_CDS: -0.96 Total: 4.42 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -6.60 Total: -28.92 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.13 Total: -0.93 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.49 Total: 0.93 kcal Total: -27.24 -2.94 -30.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_15065232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.012 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds