Wall clock time and date at job start Mon Mar 8 2021 10:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34712 * 116.99761 * 2 1 4 4 O 1.21468 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.47721 * 119.99857 * 180.02562 * 3 2 1 6 6 C 1.39610 * 120.15107 * 359.71727 * 5 3 2 7 7 C 1.37964 * 119.84766 * 179.79114 * 6 5 3 8 8 C 1.38352 * 120.15045 * 0.47326 * 7 6 5 9 9 C 1.38393 * 120.30254 * 359.77955 * 8 7 6 10 10 C 1.50688 * 119.92333 * 180.02562 * 9 8 7 11 11 H 1.08999 * 112.85183 * 191.17589 * 10 9 8 12 12 C 1.53777 * 113.61916 * 322.48582 * 10 9 8 13 13 C 1.53780 * 87.08307 * 139.98047 * 12 10 9 14 14 H 1.09002 * 113.61633 * 220.01996 * 13 12 10 15 15 N 1.46497 * 113.69265 * 89.12970 * 13 12 10 16 16 S 1.65607 * 120.00183 * 118.71078 * 15 13 12 17 17 O 1.42099 * 106.39969 * 175.53678 * 16 15 13 18 18 O 1.42092 * 106.40051 * 308.45883 * 16 15 13 19 19 C 1.76207 * 107.21491 * 61.99722 * 16 15 13 20 20 C 1.33382 * 122.53503 * 91.70329 * 19 16 15 21 21 C 1.50701 * 125.20964 * 0.02562 * 20 19 16 22 22 S 1.75893 * 109.59092 * 179.90494 * 20 19 16 23 23 C 1.75884 * 90.96789 * 0.29887 * 22 20 19 24 24 C 1.50701 * 125.20523 * 179.86633 * 23 22 20 25 25 C 1.33393 * 109.59540 * 359.83245 * 23 22 20 26 26 C 1.50696 * 122.54062 * 180.02562 * 25 23 22 27 27 O 1.42906 * 109.46917 * 72.45020 * 26 25 23 28 28 Si 1.86298 * 109.47284 * 312.44854 * 26 25 23 29 29 C 1.53774 * 87.08145 * 334.56685 * 13 12 10 30 30 C 1.37921 * 120.14814 * 359.97438 * 9 8 7 31 31 H 1.09002 * 109.46928 * 60.00290 * 1 2 3 32 32 H 1.08997 * 109.47489 * 300.00272 * 1 2 3 33 33 H 1.08998 * 109.46908 * 179.97438 * 1 2 3 34 34 H 1.07994 * 120.07245 * 0.02562 * 6 5 3 35 35 H 1.08004 * 119.92350 * 180.23158 * 7 6 5 36 36 H 1.07999 * 119.84857 * 179.76656 * 8 7 6 37 37 H 1.09001 * 113.61474 * 254.52823 * 12 10 9 38 38 H 1.09001 * 113.61543 * 25.42969 * 12 10 9 39 39 H 0.96997 * 119.99989 * 298.71166 * 15 13 12 40 40 H 1.08999 * 109.46698 * 84.23480 * 21 20 19 41 41 H 1.09000 * 109.47327 * 204.23612 * 21 20 19 42 42 H 1.08994 * 109.46869 * 324.24194 * 21 20 19 43 43 H 1.08997 * 109.46859 * 271.34179 * 24 23 22 44 44 H 1.09007 * 109.46659 * 31.33916 * 24 23 22 45 45 H 1.08998 * 109.47341 * 151.33863 * 24 23 22 46 46 H 1.09005 * 109.47223 * 192.44569 * 26 25 23 47 47 H 0.96699 * 114.00543 * 65.30380 * 27 26 25 48 48 H 1.48503 * 110.00178 * 183.45249 * 28 26 25 49 49 H 1.48496 * 110.00261 * 304.77359 * 28 26 25 50 50 H 1.09002 * 113.61675 * 270.88540 * 29 13 12 51 51 H 1.09004 * 113.69008 * 139.99412 * 29 13 12 52 52 H 1.08001 * 120.07353 * 179.97438 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.3022 0.1088 0.0048 7 6 5.6796 0.1883 -0.0001 8 6 6.3044 1.4227 -0.0005 9 6 5.5537 2.5853 -0.0006 10 6 6.2431 3.9253 -0.0016 11 1 5.5606 4.7526 0.1931 12 6 7.5192 3.9622 0.8556 13 6 8.1491 4.8139 -0.2592 14 1 9.1892 4.5621 -0.4663 15 7 7.9348 6.2535 -0.0924 16 16 9.2311 7.2685 0.0862 17 8 8.7058 8.5884 0.1183 18 8 10.0269 6.7231 1.1294 19 6 10.1921 7.1510 -1.3861 20 6 10.0110 7.9642 -2.4277 21 6 8.9901 9.0704 -2.4992 22 16 11.1482 7.5500 -3.7040 23 6 11.8195 6.2518 -2.7255 24 6 12.9376 5.3341 -3.1484 25 6 11.1882 6.2042 -1.5514 26 6 11.5336 5.1965 -0.4855 27 8 12.7888 5.5394 0.1053 28 14 11.6489 3.5007 -1.2481 29 6 7.1510 4.1500 -1.2223 30 6 4.1760 2.5203 -0.0008 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.8157 -0.8553 0.0090 35 1 6.2714 -0.7151 0.0003 36 1 7.3829 1.4793 -0.0005 37 1 7.3972 4.4970 1.7975 38 1 7.9906 2.9872 0.9793 39 1 7.0336 6.6122 -0.0865 40 1 9.3931 9.9675 -2.0292 41 1 8.7551 9.2811 -3.5425 42 1 8.0839 8.7628 -1.9775 43 1 12.5220 4.4706 -3.6677 44 1 13.6137 5.8687 -3.8157 45 1 13.4857 4.9993 -2.2677 46 1 10.7587 5.1983 0.2811 47 1 12.7794 6.3750 0.5918 48 1 11.9067 2.4864 -0.1946 49 1 10.3887 3.1794 -1.9649 50 1 7.5216 3.2263 -1.6668 51 1 6.7310 4.8353 -1.9587 52 1 3.5913 3.4284 -0.0004 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15508398_15065288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:31 Heat of formation + Delta-G solvation = -93.525330 kcal Electronic energy + Delta-G solvation = -39406.898709 eV Core-core repulsion = 34365.165073 eV Total energy + Delta-G solvation = -5041.733636 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 438.110 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.82671 -41.12019 -40.27906 -39.21574 -38.67632 -37.59974 -37.18226 -36.99480 -34.54172 -34.28080 -32.38797 -31.85628 -30.80264 -28.74567 -28.09359 -26.78175 -26.28247 -25.84462 -25.14614 -23.26885 -22.98998 -22.17192 -21.06876 -20.45237 -20.00534 -19.29473 -18.79871 -18.50397 -18.26016 -18.17701 -17.49744 -17.42713 -17.10650 -16.85298 -16.42495 -16.23706 -16.08102 -15.92819 -15.44216 -15.14429 -15.02131 -14.81985 -14.74458 -14.67837 -14.54732 -14.33488 -14.28177 -14.14371 -14.07278 -13.72093 -13.64664 -13.44981 -13.42952 -13.39985 -13.34621 -13.15006 -13.01085 -12.82645 -12.71836 -12.58965 -12.48910 -12.15380 -11.99231 -11.92458 -11.84352 -11.80112 -11.72404 -11.38586 -11.20973 -10.96433 -10.65408 -10.11691 -9.98576 -9.79137 -9.51892 -4.87583 -0.90655 -0.44935 -0.42391 0.26717 0.38964 0.68404 0.83570 1.33387 1.37613 1.56960 1.58674 1.85789 1.93551 2.49884 2.64430 3.09464 3.31356 3.46373 3.50028 3.51929 3.57778 3.69497 3.79121 3.83062 3.87850 3.91154 3.99507 4.05095 4.08375 4.19970 4.20275 4.24102 4.25097 4.25624 4.36482 4.49882 4.54218 4.61909 4.62825 4.67652 4.68323 4.73243 4.74945 4.85174 4.90569 4.92363 4.94897 4.98773 5.07065 5.11615 5.13709 5.21861 5.28784 5.30690 5.35849 5.51018 5.79637 5.87750 6.53750 6.55610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.506 3.494 4 O -0.540 6.540 5 C -0.146 4.146 6 C -0.066 4.066 7 C -0.126 4.126 8 C -0.080 4.080 9 C -0.083 4.083 10 C -0.070 4.070 11 H 0.109 0.891 12 C -0.149 4.149 13 C 0.113 3.887 14 H 0.092 0.908 15 N -1.087 6.087 16 S 2.713 3.287 17 O -0.973 6.973 18 O -0.975 6.975 19 C -0.694 4.694 20 C -0.059 4.059 21 C -0.116 4.116 22 S 0.187 5.813 23 C -0.168 4.168 24 C -0.106 4.106 25 C -0.098 4.098 26 C -0.106 4.106 27 O -0.537 6.537 28 Si 0.760 3.240 29 C -0.130 4.130 30 C -0.062 4.062 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.134 0.866 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.431 0.569 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.372 0.628 48 H -0.277 1.277 49 H -0.231 1.231 50 H 0.106 0.894 51 H 0.091 0.909 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -4.709 -6.445 8.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.353 3.647 4 O -0.432 6.432 5 C -0.147 4.147 6 C -0.084 4.084 7 C -0.143 4.143 8 C -0.098 4.098 9 C -0.083 4.083 10 C -0.088 4.088 11 H 0.127 0.873 12 C -0.188 4.188 13 C 0.005 3.995 14 H 0.110 0.890 15 N -0.849 5.849 16 S 2.803 3.197 17 O -0.963 6.963 18 O -0.965 6.965 19 C -0.795 4.795 20 C -0.181 4.181 21 C -0.174 4.174 22 S 0.453 5.547 23 C -0.286 4.286 24 C -0.164 4.164 25 C -0.108 4.108 26 C -0.215 4.215 27 O -0.343 6.343 28 Si 0.657 3.343 29 C -0.169 4.169 30 C -0.081 4.081 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.269 0.731 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.108 0.892 47 H 0.221 0.779 48 H -0.204 1.204 49 H -0.155 1.155 50 H 0.125 0.875 51 H 0.110 0.890 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.144 -4.741 -7.498 9.126 hybrid contribution -1.825 1.102 2.128 3.012 sum 0.319 -3.639 -5.370 6.495 Atomic orbital electron populations 1.23586 0.74292 1.05951 1.02579 1.86531 1.25197 1.31789 1.83769 1.21624 0.89900 0.81423 0.71768 1.90823 1.67660 1.37092 1.47607 1.19181 0.88265 0.96065 1.11186 1.21679 0.94623 0.97772 0.94323 1.21502 0.93951 0.99163 0.99727 1.21648 1.01514 0.91593 0.95031 1.19710 0.92080 0.95878 1.00587 1.21574 0.95458 0.94203 0.97549 0.87280 1.23691 0.95631 1.01309 0.98157 1.21878 0.99789 0.79151 0.98690 0.88991 1.55096 1.23039 1.16399 1.90318 1.01116 0.72820 0.72217 0.73515 1.93584 1.79120 1.36444 1.87183 1.93517 1.69908 1.79078 1.53953 1.29335 1.18491 1.09414 1.22285 1.24775 0.99634 0.98074 0.95599 1.20981 0.96128 0.94999 1.05301 1.84315 1.27569 1.26573 1.16202 1.24790 1.04024 1.02820 0.96992 1.20644 0.94352 0.97549 1.03819 1.18615 0.96758 0.98423 0.96996 1.26127 0.90436 1.08921 0.96006 1.86616 1.30432 1.45073 1.72172 0.92430 0.87270 0.70059 0.84555 1.23493 0.95156 1.01996 0.96279 1.21202 0.94696 0.96460 0.95695 0.91907 0.91978 0.84750 0.83365 0.82320 0.83160 0.90098 0.87256 0.73129 0.88494 0.88030 0.88796 0.87133 0.88279 0.88175 0.89221 0.77933 1.20363 1.15511 0.87526 0.89010 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.63 9.82 -56.22 -0.55 -2.18 16 3 C 0.51 4.07 7.90 70.33 0.56 4.62 16 4 O -0.54 -7.40 16.14 19.94 0.32 -7.07 16 5 C -0.15 -0.60 5.87 -20.10 -0.12 -0.72 16 6 C -0.07 0.03 9.62 22.54 0.22 0.25 16 7 C -0.13 0.50 10.03 22.23 0.22 0.72 16 8 C -0.08 0.32 8.60 22.33 0.19 0.51 16 9 C -0.08 0.13 5.28 -19.91 -0.11 0.02 16 10 C -0.07 0.29 3.80 -11.02 -0.04 0.24 16 11 H 0.11 -0.56 8.05 -2.39 -0.02 -0.58 16 12 C -0.15 0.51 7.25 31.12 0.23 0.73 16 13 C 0.11 -0.31 4.35 45.52 0.20 -0.11 16 14 H 0.09 -0.16 3.56 -2.39 -0.01 -0.17 16 15 N -1.09 2.19 5.73 -167.21 -0.96 1.23 16 16 S 2.71 10.95 5.25 -56.49 -0.30 10.66 16 17 O -0.97 -7.65 15.10 -128.00 -1.93 -9.58 16 18 O -0.97 -8.81 14.56 -128.00 -1.86 -10.67 16 19 C -0.69 -1.83 5.80 21.21 0.12 -1.70 16 20 C -0.06 -0.03 6.50 24.59 0.16 0.12 16 21 C -0.12 0.20 8.87 71.24 0.63 0.84 16 22 S 0.19 -0.39 23.31 -56.49 -1.32 -1.71 16 23 C -0.17 0.17 6.11 24.59 0.15 0.32 16 24 C -0.11 0.69 8.30 71.24 0.59 1.28 16 25 C -0.10 -0.21 4.52 -20.92 -0.09 -0.30 16 26 C -0.11 -0.35 1.53 71.23 0.11 -0.24 16 27 O -0.54 -2.62 12.09 -148.98 -1.80 -4.42 16 28 Si 0.76 -0.71 26.40 68.60 1.81 1.10 16 29 C -0.13 0.71 7.34 31.12 0.23 0.94 16 30 C -0.06 -0.17 9.25 22.54 0.21 0.04 16 31 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.15 -0.45 7.61 -2.91 -0.02 -0.47 16 35 H 0.16 -1.44 8.06 -2.91 -0.02 -1.47 16 36 H 0.15 -1.26 6.64 -2.91 -0.02 -1.28 16 37 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.11 -0.63 6.30 -2.39 -0.02 -0.65 16 39 H 0.43 -2.62 8.78 -96.75 -0.85 -3.47 16 40 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.09 -0.19 6.61 -2.39 -0.02 -0.20 16 43 H 0.11 -1.20 7.03 -2.39 -0.02 -1.22 16 44 H 0.10 -0.89 8.14 -2.38 -0.02 -0.90 16 45 H 0.10 -0.59 5.60 -2.39 -0.01 -0.60 16 46 H 0.09 0.45 3.35 -2.38 -0.01 0.44 16 47 H 0.37 1.10 9.11 -74.06 -0.67 0.42 16 48 H -0.28 -1.26 7.11 99.48 0.71 -0.55 16 49 H -0.23 0.60 7.11 99.48 0.71 1.30 16 50 H 0.11 -0.73 7.72 -2.39 -0.02 -0.75 16 51 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 52 H 0.13 0.47 7.64 -2.91 -0.02 0.45 16 Total: 0.00 -23.67 435.28 -2.41 -26.08 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: -0.47 Total: -12.18 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.65 Total: 8.75 kcal Atomic # 7 Polarization: 2.19 SS G_CDS: -0.96 Total: 1.23 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -5.83 Total: -33.94 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 1.81 Total: 1.10 kcal Atomic # 16 Polarization: 10.56 SS G_CDS: -1.61 Total: 8.94 kcal Total: -23.67 -2.41 -26.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_15065288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.446 kcal (2) G-P(sol) polarization free energy of solvation -23.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds