Wall clock time and date at job start Mon Mar 8 2021 10:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34718 * 117.00507 * 2 1 4 4 O 1.21464 * 119.99664 * 359.97438 * 3 2 1 5 5 C 1.47720 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.39612 * 120.14883 * 179.97438 * 5 3 2 7 7 C 1.37965 * 119.84654 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.92352 * 180.02562 * 7 6 5 9 9 H 1.08997 * 112.85131 * 348.80282 * 8 7 6 10 10 C 1.53784 * 113.61468 * 120.00100 * 8 7 6 11 11 C 1.53777 * 87.08113 * 140.06801 * 10 8 7 12 12 H 1.09002 * 113.60877 * 219.93670 * 11 10 8 13 13 N 1.46494 * 113.61906 * 89.11643 * 11 10 8 14 14 S 1.65599 * 120.00362 * 144.34535 * 13 11 10 15 15 O 1.42102 * 106.40043 * 310.61675 * 14 13 11 16 16 O 1.42096 * 106.40578 * 177.69526 * 14 13 11 17 17 C 1.76206 * 107.21624 * 64.15238 * 14 13 11 18 18 C 1.38209 * 119.99781 * 63.89285 * 17 14 13 19 19 C 1.50704 * 120.00162 * 359.97438 * 18 17 14 20 20 O 1.42900 * 109.46841 * 75.78495 * 19 18 17 21 21 Si 1.86298 * 109.46779 * 195.78639 * 19 18 17 22 22 C 1.38261 * 119.99802 * 179.97438 * 18 17 14 23 23 C 1.38213 * 119.99720 * 0.02562 * 22 18 17 24 24 C 1.38247 * 120.00289 * 359.95911 * 23 22 18 25 25 C 1.38212 * 120.00289 * 359.97438 * 24 23 22 26 26 C 1.53774 * 113.69246 * 217.53552 * 8 7 6 27 27 C 1.38344 * 120.15173 * 0.27427 * 7 6 5 28 28 C 1.38385 * 120.30262 * 359.45047 * 27 7 6 29 29 C 1.37925 * 120.15220 * 0.54917 * 28 27 7 30 30 H 1.08996 * 109.46976 * 59.99661 * 1 2 3 31 31 H 1.08992 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47195 * 300.00391 * 1 2 3 33 33 H 1.07998 * 120.07292 * 0.02562 * 6 5 3 34 34 H 1.09002 * 113.61715 * 25.51139 * 10 8 7 35 35 H 1.09008 * 113.61228 * 254.61380 * 10 8 7 36 36 H 0.97001 * 119.99560 * 324.34589 * 13 11 10 37 37 H 1.08995 * 109.46732 * 315.78870 * 19 18 17 38 38 H 0.96697 * 113.99640 * 184.92932 * 20 19 18 39 39 H 1.48493 * 110.00309 * 299.99580 * 21 19 18 40 40 H 1.48503 * 110.00087 * 61.32401 * 21 19 18 41 41 H 1.07995 * 119.99680 * 180.02562 * 22 18 17 42 42 H 1.07999 * 119.99314 * 179.97438 * 23 22 18 43 43 H 1.08006 * 120.00133 * 179.71860 * 24 23 22 44 44 H 1.07997 * 120.00643 * 180.02562 * 25 24 23 45 45 H 1.09005 * 113.61815 * 105.45886 * 26 8 7 46 46 H 1.09004 * 113.61605 * 334.55526 * 26 8 7 47 47 H 1.08000 * 119.84970 * 179.72716 * 27 7 6 48 48 H 1.07998 * 119.92873 * 180.25322 * 28 27 7 49 49 H 1.07998 * 120.08335 * 179.70283 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2775 0.0006 6 6 4.1760 2.5197 0.0000 7 6 5.5541 2.5846 0.0011 8 6 6.2437 3.9246 0.0011 9 1 5.5614 4.7517 -0.1948 10 6 7.1510 4.1504 1.2220 11 6 8.1486 4.8153 0.2590 12 1 9.1890 4.5657 0.4673 13 7 7.9316 6.2543 0.0904 14 16 9.2253 7.2698 -0.1030 15 8 10.1435 6.9516 0.9338 16 8 8.6886 8.5717 -0.2933 17 6 10.0121 6.8297 -1.6169 18 6 9.3371 6.9747 -2.8142 19 6 7.9279 7.5088 -2.8248 20 8 7.9524 8.9216 -2.6116 21 14 7.1376 7.1428 -4.4717 22 6 9.9547 6.6299 -4.0022 23 6 11.2469 6.1396 -3.9923 24 6 11.9222 5.9948 -2.7947 25 6 11.3053 6.3408 -1.6072 26 6 7.5199 3.9627 -0.8558 27 6 6.3044 1.4223 -0.0030 28 6 5.6794 0.1877 0.0032 29 6 4.3025 0.1082 0.0022 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.5914 3.4278 -0.0004 34 1 7.5225 3.2272 1.6668 35 1 6.7307 4.8365 1.9575 36 1 7.0300 6.6122 0.0920 37 1 7.3525 7.0316 -2.0316 38 1 7.0761 9.3224 -2.5310 39 1 7.9127 7.7880 -5.5616 40 1 7.0773 5.6753 -4.6912 41 1 9.4273 6.7436 -4.9377 42 1 11.7291 5.8698 -4.9202 43 1 12.9303 5.6074 -2.7866 44 1 11.8330 6.2281 -0.6717 45 1 7.3976 4.4972 -1.7979 46 1 7.9924 2.9882 -0.9792 47 1 7.3830 1.4788 -0.0066 48 1 6.2711 -0.7158 0.0041 49 1 3.8158 -0.8559 0.0022 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15508398_2726874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:39 Heat of formation + Delta-G solvation = -89.190740 kcal Electronic energy + Delta-G solvation = -36344.762732 eV Core-core repulsion = 31525.140050 eV Total energy + Delta-G solvation = -4819.622682 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.75828 -41.07444 -40.69489 -39.23365 -38.32580 -37.40213 -37.35341 -36.73837 -34.54953 -33.01653 -32.49497 -32.40477 -31.87378 -28.74069 -27.03474 -26.89630 -26.25959 -25.10952 -24.49437 -23.03624 -22.74146 -22.08657 -20.87782 -20.36302 -19.29792 -18.66381 -18.53705 -18.24884 -18.13014 -17.42100 -17.33459 -17.14041 -17.09731 -16.80860 -16.26305 -16.11150 -15.96264 -15.68543 -15.24056 -15.12671 -14.94684 -14.81351 -14.65470 -14.53904 -14.30556 -14.16143 -13.92528 -13.78821 -13.57246 -13.43639 -13.39429 -13.20009 -13.13818 -12.96689 -12.87908 -12.82894 -12.57848 -12.18372 -12.15764 -12.07551 -11.92662 -11.79633 -11.68890 -11.65897 -11.34627 -10.71469 -10.53618 -10.28741 -10.14925 -10.13867 -9.84468 -5.10542 -0.66572 -0.38851 -0.31370 0.02726 0.21298 1.08965 1.49764 1.50512 1.65648 1.79101 1.86827 2.29313 2.62662 2.74001 3.15219 3.22884 3.35344 3.43697 3.46197 3.61020 3.61542 3.69990 3.72160 3.78212 3.86380 3.89097 3.93579 3.97229 4.01410 4.13789 4.15731 4.17857 4.23647 4.25798 4.31286 4.46839 4.48369 4.53983 4.54330 4.65049 4.67433 4.74429 4.81098 4.84466 4.86505 4.90152 5.02488 5.15678 5.16242 5.19711 5.22230 5.35220 5.44679 5.61180 5.71795 5.80370 6.66317 6.71475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.508 3.492 4 O -0.504 6.504 5 C -0.124 4.124 6 C -0.050 4.050 7 C -0.082 4.082 8 C -0.073 4.073 9 H 0.104 0.896 10 C -0.132 4.132 11 C 0.124 3.876 12 H 0.109 0.891 13 N -1.100 6.100 14 S 2.690 3.310 15 O -0.957 6.957 16 O -0.924 6.924 17 C -0.654 4.654 18 C 0.031 3.969 19 C -0.105 4.105 20 O -0.514 6.514 21 Si 0.692 3.308 22 C -0.144 4.144 23 C -0.057 4.057 24 C -0.133 4.133 25 C -0.021 4.021 26 C -0.150 4.150 27 C -0.081 4.081 28 C -0.128 4.128 29 C -0.065 4.065 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.385 0.615 39 H -0.246 1.246 40 H -0.251 1.251 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -5.577 -2.256 6.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.393 6.393 5 C -0.126 4.126 6 C -0.068 4.068 7 C -0.082 4.082 8 C -0.091 4.091 9 H 0.122 0.878 10 C -0.171 4.171 11 C 0.016 3.984 12 H 0.127 0.873 13 N -0.859 5.859 14 S 2.778 3.222 15 O -0.947 6.947 16 O -0.913 6.913 17 C -0.740 4.740 18 C 0.029 3.971 19 C -0.216 4.216 20 O -0.320 6.320 21 Si 0.592 3.408 22 C -0.162 4.162 23 C -0.075 4.075 24 C -0.152 4.152 25 C -0.040 4.040 26 C -0.190 4.190 27 C -0.099 4.099 28 C -0.146 4.146 29 C -0.083 4.083 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.233 0.767 39 H -0.171 1.171 40 H -0.175 1.175 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.149 0.851 48 H 0.151 0.849 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.593 -5.153 -2.511 5.763 hybrid contribution -0.131 -0.448 -0.358 0.588 sum -0.724 -5.601 -2.869 6.335 Atomic orbital electron populations 1.23336 0.75431 1.04098 1.02864 1.86532 1.23975 1.32482 1.84192 1.21233 0.89163 0.81590 0.72774 1.90852 1.66798 1.36025 1.45578 1.19094 0.89010 0.95055 1.09396 1.21167 0.93965 0.96822 0.94837 1.19613 0.92679 0.95052 1.00892 1.21579 0.95526 0.94391 0.97620 0.87828 1.23422 0.95739 1.01644 0.96321 1.21665 1.00534 0.79122 0.97110 0.87338 1.55505 1.23641 1.17513 1.89239 1.02226 0.73128 0.73201 0.73597 1.93597 1.63332 1.84620 1.53145 1.93704 1.77820 1.33968 1.85850 1.30820 1.06979 1.16745 1.19474 1.18902 0.93215 0.92660 0.92277 1.25044 0.96228 0.87667 1.12687 1.86663 1.34009 1.15759 1.95603 0.94839 0.88690 0.81675 0.75588 1.21154 0.96195 1.01613 0.97278 1.21452 0.93566 0.93660 0.98869 1.21389 1.00780 1.00794 0.92237 1.21084 0.92018 0.91061 0.99857 1.23670 0.96008 1.01132 0.98154 1.21335 1.00478 0.91842 0.96201 1.21187 0.94342 0.98169 1.00940 1.21510 0.94029 0.98011 0.94767 0.91618 0.87696 0.91616 0.84439 0.88245 0.89783 0.74513 0.90994 0.76720 1.17111 1.17535 0.85292 0.84694 0.84430 0.83470 0.90416 0.88329 0.85109 0.84871 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.55 9.82 -40.54 -0.40 -0.94 16 3 C 0.51 1.41 7.90 34.60 0.27 1.68 16 4 O -0.50 -2.62 16.14 -19.24 -0.31 -2.93 16 5 C -0.12 -0.13 5.87 -104.98 -0.62 -0.75 16 6 C -0.05 -0.01 9.25 -39.17 -0.36 -0.37 16 7 C -0.08 0.13 5.28 -104.68 -0.55 -0.42 16 8 C -0.07 0.23 3.79 -90.96 -0.34 -0.12 16 9 H 0.10 -0.41 8.04 -51.93 -0.42 -0.83 16 10 C -0.13 0.42 7.33 -25.92 -0.19 0.23 16 11 C 0.12 -0.33 4.50 -67.12 -0.30 -0.64 16 12 H 0.11 -0.30 7.80 -51.93 -0.41 -0.71 16 13 N -1.10 2.13 4.44 -4.20 -0.02 2.12 16 14 S 2.69 4.80 4.95 -107.50 -0.53 4.27 16 15 O -0.96 -4.22 16.54 -57.17 -0.95 -5.17 16 16 O -0.92 -3.94 15.01 -66.42 -1.00 -4.94 16 17 C -0.65 -1.15 5.86 -39.58 -0.23 -1.38 16 18 C 0.03 0.05 5.28 -104.62 -0.55 -0.50 16 19 C -0.11 0.02 1.84 36.01 0.07 0.09 16 20 O -0.51 -0.59 10.45 -57.76 -0.60 -1.19 16 21 Si 0.69 -1.05 30.30 -169.99 -5.15 -6.20 16 22 C -0.14 -0.20 8.66 -39.58 -0.34 -0.54 16 23 C -0.06 0.00 10.05 -39.59 -0.40 -0.40 16 24 C -0.13 0.02 10.05 -39.59 -0.40 -0.38 16 25 C -0.02 -0.02 9.55 -39.58 -0.38 -0.40 16 26 C -0.15 0.51 7.25 -25.92 -0.19 0.32 16 27 C -0.08 0.18 8.62 -39.49 -0.34 -0.16 16 28 C -0.13 0.24 10.03 -39.64 -0.40 -0.16 16 29 C -0.06 0.04 9.62 -39.17 -0.38 -0.34 16 30 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 32 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 33 H 0.14 0.00 7.64 -52.49 -0.40 -0.40 16 34 H 0.10 -0.37 7.73 -51.93 -0.40 -0.77 16 35 H 0.08 -0.25 8.14 -51.92 -0.42 -0.67 16 36 H 0.42 -1.69 8.47 -34.47 -0.29 -1.99 16 37 H 0.07 -0.19 5.81 -51.93 -0.30 -0.50 16 38 H 0.38 -1.33 8.86 45.56 0.40 -0.92 16 39 H -0.25 -0.31 6.72 56.52 0.38 0.07 16 40 H -0.25 -0.07 7.11 56.52 0.40 0.34 16 41 H 0.13 0.09 4.91 -52.49 -0.26 -0.17 16 42 H 0.14 -0.32 8.06 -52.49 -0.42 -0.75 16 43 H 0.14 -0.36 8.06 -52.48 -0.42 -0.78 16 44 H 0.15 -0.02 7.34 -52.49 -0.39 -0.40 16 45 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 46 H 0.10 -0.41 6.30 -51.93 -0.33 -0.74 16 47 H 0.13 -0.55 6.63 -52.49 -0.35 -0.90 16 48 H 0.13 -0.50 8.06 -52.49 -0.42 -0.93 16 49 H 0.14 -0.22 7.61 -52.49 -0.40 -0.62 16 LS Contribution 414.79 15.07 6.25 6.25 Total: 0.00 -12.55 414.79 -13.40 -25.96 By element: Atomic # 1 Polarization: -7.89 SS G_CDS: -6.13 Total: -14.03 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -4.57 Total: -3.19 kcal Atomic # 7 Polarization: 2.13 SS G_CDS: -0.02 Total: 2.12 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -3.25 Total: -15.17 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.15 Total: -6.20 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -0.53 Total: 4.27 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -12.55 -13.40 -25.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_2726874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.232 kcal (2) G-P(sol) polarization free energy of solvation -12.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds