Wall clock time and date at job start Mon Mar 8 2021 10:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34718 * 117.00507 * 2 1 4 4 O 1.21464 * 119.99664 * 359.97438 * 3 2 1 5 5 C 1.47720 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.39612 * 120.14883 * 179.97438 * 5 3 2 7 7 C 1.37965 * 119.84654 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.92352 * 180.02562 * 7 6 5 9 9 H 1.08997 * 112.85131 * 348.80282 * 8 7 6 10 10 C 1.53784 * 113.61468 * 120.00100 * 8 7 6 11 11 C 1.53777 * 87.08113 * 140.06801 * 10 8 7 12 12 H 1.09002 * 113.60877 * 219.93670 * 11 10 8 13 13 N 1.46494 * 113.61906 * 89.11643 * 11 10 8 14 14 S 1.65599 * 120.00362 * 144.34535 * 13 11 10 15 15 O 1.42102 * 106.40043 * 310.61675 * 14 13 11 16 16 O 1.42096 * 106.40578 * 177.69526 * 14 13 11 17 17 C 1.76206 * 107.21624 * 64.15238 * 14 13 11 18 18 C 1.38209 * 119.99781 * 63.89285 * 17 14 13 19 19 C 1.50704 * 120.00162 * 359.97438 * 18 17 14 20 20 O 1.42900 * 109.46841 * 75.78495 * 19 18 17 21 21 Si 1.86298 * 109.46779 * 195.78639 * 19 18 17 22 22 C 1.38261 * 119.99802 * 179.97438 * 18 17 14 23 23 C 1.38213 * 119.99720 * 0.02562 * 22 18 17 24 24 C 1.38247 * 120.00289 * 359.95911 * 23 22 18 25 25 C 1.38212 * 120.00289 * 359.97438 * 24 23 22 26 26 C 1.53774 * 113.69246 * 217.53552 * 8 7 6 27 27 C 1.38344 * 120.15173 * 0.27427 * 7 6 5 28 28 C 1.38385 * 120.30262 * 359.45047 * 27 7 6 29 29 C 1.37925 * 120.15220 * 0.54917 * 28 27 7 30 30 H 1.08996 * 109.46976 * 59.99661 * 1 2 3 31 31 H 1.08992 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47195 * 300.00391 * 1 2 3 33 33 H 1.07998 * 120.07292 * 0.02562 * 6 5 3 34 34 H 1.09002 * 113.61715 * 25.51139 * 10 8 7 35 35 H 1.09008 * 113.61228 * 254.61380 * 10 8 7 36 36 H 0.97001 * 119.99560 * 324.34589 * 13 11 10 37 37 H 1.08995 * 109.46732 * 315.78870 * 19 18 17 38 38 H 0.96697 * 113.99640 * 184.92932 * 20 19 18 39 39 H 1.48493 * 110.00309 * 299.99580 * 21 19 18 40 40 H 1.48503 * 110.00087 * 61.32401 * 21 19 18 41 41 H 1.07995 * 119.99680 * 180.02562 * 22 18 17 42 42 H 1.07999 * 119.99314 * 179.97438 * 23 22 18 43 43 H 1.08006 * 120.00133 * 179.71860 * 24 23 22 44 44 H 1.07997 * 120.00643 * 180.02562 * 25 24 23 45 45 H 1.09005 * 113.61815 * 105.45886 * 26 8 7 46 46 H 1.09004 * 113.61605 * 334.55526 * 26 8 7 47 47 H 1.08000 * 119.84970 * 179.72716 * 27 7 6 48 48 H 1.07998 * 119.92873 * 180.25322 * 28 27 7 49 49 H 1.07998 * 120.08335 * 179.70283 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2775 0.0006 6 6 4.1760 2.5197 0.0000 7 6 5.5541 2.5846 0.0011 8 6 6.2437 3.9246 0.0011 9 1 5.5614 4.7517 -0.1948 10 6 7.1510 4.1504 1.2220 11 6 8.1486 4.8153 0.2590 12 1 9.1890 4.5657 0.4673 13 7 7.9316 6.2543 0.0904 14 16 9.2253 7.2698 -0.1030 15 8 10.1435 6.9516 0.9338 16 8 8.6886 8.5717 -0.2933 17 6 10.0121 6.8297 -1.6169 18 6 9.3371 6.9747 -2.8142 19 6 7.9279 7.5088 -2.8248 20 8 7.9524 8.9216 -2.6116 21 14 7.1376 7.1428 -4.4717 22 6 9.9547 6.6299 -4.0022 23 6 11.2469 6.1396 -3.9923 24 6 11.9222 5.9948 -2.7947 25 6 11.3053 6.3408 -1.6072 26 6 7.5199 3.9627 -0.8558 27 6 6.3044 1.4223 -0.0030 28 6 5.6794 0.1877 0.0032 29 6 4.3025 0.1082 0.0022 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.5914 3.4278 -0.0004 34 1 7.5225 3.2272 1.6668 35 1 6.7307 4.8365 1.9575 36 1 7.0300 6.6122 0.0920 37 1 7.3525 7.0316 -2.0316 38 1 7.0761 9.3224 -2.5310 39 1 7.9127 7.7880 -5.5616 40 1 7.0773 5.6753 -4.6912 41 1 9.4273 6.7436 -4.9377 42 1 11.7291 5.8698 -4.9202 43 1 12.9303 5.6074 -2.7866 44 1 11.8330 6.2281 -0.6717 45 1 7.3976 4.4972 -1.7979 46 1 7.9924 2.9882 -0.9792 47 1 7.3830 1.4788 -0.0066 48 1 6.2711 -0.7158 0.0041 49 1 3.8158 -0.8559 0.0022 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15508398_2726874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:04:37 Heat of formation + Delta-G solvation = -89.762321 kcal Electronic energy + Delta-G solvation = -36344.787518 eV Core-core repulsion = 31525.140050 eV Total energy + Delta-G solvation = -4819.647468 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.76011 -41.01202 -40.68298 -39.11758 -38.48567 -37.55851 -37.39166 -36.95521 -34.44702 -33.00684 -32.50668 -32.31984 -31.75777 -28.70731 -26.99254 -26.64333 -26.08684 -25.08168 -24.50916 -22.90675 -22.74074 -22.07030 -20.88481 -20.27775 -19.29648 -18.66951 -18.54151 -18.31505 -18.18547 -17.45733 -17.41248 -17.04846 -17.02848 -16.72287 -16.20546 -15.99544 -15.95996 -15.76003 -15.20571 -14.97122 -14.91069 -14.73689 -14.62929 -14.48260 -14.28068 -14.12632 -13.93366 -13.61465 -13.57197 -13.42087 -13.28384 -13.22460 -13.15662 -13.10108 -13.08096 -12.74355 -12.50658 -12.20127 -12.16021 -11.95296 -11.88974 -11.76794 -11.72131 -11.65146 -11.19022 -10.61327 -10.52728 -10.23825 -10.14213 -10.04800 -9.71404 -5.00011 -0.73604 -0.36080 -0.35813 0.00731 0.33591 1.17248 1.43180 1.58369 1.63341 1.83463 1.88915 2.28572 2.65503 2.71411 3.21587 3.28421 3.47745 3.60727 3.63020 3.64817 3.67733 3.78327 3.91007 3.93614 3.97309 3.99033 4.06664 4.15213 4.17902 4.24156 4.26453 4.27843 4.29002 4.31469 4.44007 4.47639 4.65017 4.66983 4.71619 4.79981 4.84441 4.88799 4.97531 4.99914 5.04749 5.06798 5.11612 5.16947 5.19096 5.28455 5.42001 5.43087 5.60652 5.63857 5.86852 6.02258 6.58158 6.90159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.505 3.495 4 O -0.539 6.539 5 C -0.147 4.147 6 C -0.063 4.063 7 C -0.081 4.081 8 C -0.072 4.072 9 H 0.110 0.890 10 C -0.129 4.129 11 C 0.117 3.883 12 H 0.111 0.889 13 N -1.089 6.089 14 S 2.704 3.296 15 O -0.988 6.988 16 O -0.954 6.954 17 C -0.664 4.664 18 C 0.014 3.986 19 C -0.121 4.121 20 O -0.539 6.539 21 Si 0.773 3.227 22 C -0.164 4.164 23 C -0.059 4.059 24 C -0.134 4.134 25 C -0.034 4.034 26 C -0.146 4.146 27 C -0.077 4.077 28 C -0.128 4.128 29 C -0.070 4.070 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.429 0.571 37 H 0.093 0.907 38 H 0.401 0.599 39 H -0.287 1.287 40 H -0.272 1.272 41 H 0.130 0.870 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.153 0.847 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.156 0.844 48 H 0.157 0.843 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -7.023 -2.540 7.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.352 3.648 4 O -0.431 6.431 5 C -0.148 4.148 6 C -0.081 4.081 7 C -0.081 4.081 8 C -0.090 4.090 9 H 0.128 0.872 10 C -0.168 4.168 11 C 0.009 3.991 12 H 0.129 0.871 13 N -0.851 5.851 14 S 2.794 3.206 15 O -0.978 6.978 16 O -0.944 6.944 17 C -0.751 4.751 18 C 0.013 3.987 19 C -0.231 4.231 20 O -0.348 6.348 21 Si 0.676 3.324 22 C -0.182 4.182 23 C -0.077 4.077 24 C -0.152 4.152 25 C -0.053 4.053 26 C -0.185 4.185 27 C -0.095 4.095 28 C -0.146 4.146 29 C -0.088 4.088 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.268 0.732 37 H 0.111 0.889 38 H 0.252 0.748 39 H -0.215 1.215 40 H -0.198 1.198 41 H 0.147 0.853 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.171 0.829 45 H 0.095 0.905 46 H 0.130 0.870 47 H 0.174 0.826 48 H 0.174 0.826 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.265 -6.598 -2.759 7.157 hybrid contribution -0.364 -0.054 -0.303 0.477 sum -0.099 -6.652 -3.062 7.324 Atomic orbital electron populations 1.23571 0.74360 1.05871 1.02589 1.86531 1.25149 1.31939 1.83814 1.21660 0.89972 0.81384 0.71781 1.90820 1.67659 1.37028 1.47586 1.19182 0.88162 0.96147 1.11340 1.21237 0.94864 0.96360 0.95634 1.19764 0.91968 0.96112 1.00289 1.21625 0.95664 0.93916 0.97841 0.87237 1.23448 0.95329 1.01915 0.96148 1.21818 1.00969 0.78355 0.97914 0.87115 1.55180 1.23238 1.17701 1.88967 1.01505 0.73061 0.72818 0.73229 1.93553 1.64626 1.85055 1.54552 1.93658 1.78338 1.36129 1.86240 1.30756 1.07557 1.17598 1.19183 1.19192 0.94255 0.92906 0.92369 1.25334 0.95811 0.87296 1.14625 1.86611 1.35857 1.16552 1.95771 0.93939 0.87019 0.78886 0.72527 1.21367 0.97144 1.02413 0.97273 1.21798 0.93113 0.92737 1.00063 1.21710 1.01799 1.00095 0.91622 1.21325 0.91978 0.91223 1.00762 1.23692 0.95507 1.01541 0.97729 1.21673 1.01740 0.91353 0.94702 1.21493 0.93860 0.99318 0.99934 1.21659 0.94758 0.97693 0.94661 0.91900 0.84887 0.91958 0.85198 0.87255 0.90017 0.73247 0.88913 0.74806 1.21469 1.19763 0.85267 0.82323 0.81895 0.82921 0.90510 0.87017 0.82635 0.82583 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.36 -1.44 9.82 -56.27 -0.55 -1.99 16 3 C 0.51 3.61 7.90 70.33 0.56 4.17 16 4 O -0.54 -6.79 16.14 19.95 0.32 -6.47 16 5 C -0.15 -0.45 5.87 -20.10 -0.12 -0.56 16 6 C -0.06 -0.06 9.25 22.54 0.21 0.14 16 7 C -0.08 0.31 5.28 -19.90 -0.11 0.20 16 8 C -0.07 0.51 3.79 -11.02 -0.04 0.47 16 9 H 0.11 -0.91 8.04 -2.39 -0.02 -0.93 16 10 C -0.13 0.94 7.33 31.12 0.23 1.17 16 11 C 0.12 -0.72 4.50 45.52 0.20 -0.51 16 12 H 0.11 -0.70 7.80 -2.39 -0.02 -0.71 16 13 N -1.09 4.26 4.44 -167.21 -0.74 3.51 16 14 S 2.70 11.58 4.95 -56.49 -0.28 11.30 16 15 O -0.99 -9.59 16.54 -128.00 -2.12 -11.71 16 16 O -0.95 -9.17 15.01 -119.16 -1.79 -10.96 16 17 C -0.66 -2.61 5.86 22.27 0.13 -2.48 16 18 C 0.01 0.05 5.28 -19.86 -0.10 -0.05 16 19 C -0.12 0.02 1.84 71.24 0.13 0.15 16 20 O -0.54 -1.60 10.45 -127.44 -1.33 -2.93 16 21 Si 0.77 -2.15 30.30 68.60 2.08 -0.08 16 22 C -0.16 -0.48 8.66 22.27 0.19 -0.29 16 23 C -0.06 0.03 10.05 22.27 0.22 0.26 16 24 C -0.13 0.15 10.05 22.27 0.22 0.38 16 25 C -0.03 -0.07 9.55 22.27 0.21 0.14 16 26 C -0.15 1.17 7.25 31.12 0.23 1.39 16 27 C -0.08 0.48 8.62 22.33 0.19 0.67 16 28 C -0.13 0.67 10.03 22.23 0.22 0.90 16 29 C -0.07 0.09 9.62 22.54 0.22 0.31 16 30 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 33 H 0.13 0.23 7.64 -2.91 -0.02 0.20 16 34 H 0.11 -0.99 7.73 -2.39 -0.02 -1.01 16 35 H 0.08 -0.53 8.14 -2.38 -0.02 -0.55 16 36 H 0.43 -3.51 8.47 -96.74 -0.82 -4.33 16 37 H 0.09 -0.50 5.81 -2.39 -0.01 -0.52 16 38 H 0.40 -2.57 8.86 -74.06 -0.66 -3.23 16 39 H -0.29 -1.09 6.72 99.48 0.67 -0.43 16 40 H -0.27 -0.13 7.11 99.48 0.71 0.58 16 41 H 0.13 0.26 4.91 -2.91 -0.01 0.25 16 42 H 0.16 -0.98 8.06 -2.91 -0.02 -1.00 16 43 H 0.16 -1.13 8.06 -2.91 -0.02 -1.16 16 44 H 0.15 0.01 7.34 -2.91 -0.02 -0.01 16 45 H 0.08 -0.56 8.14 -2.38 -0.02 -0.57 16 46 H 0.11 -1.18 6.30 -2.38 -0.02 -1.19 16 47 H 0.16 -1.77 6.63 -2.91 -0.02 -1.79 16 48 H 0.16 -1.57 8.06 -2.91 -0.02 -1.59 16 49 H 0.14 -0.49 7.61 -2.91 -0.02 -0.51 16 Total: 0.00 -30.36 414.79 -0.87 -31.23 By element: Atomic # 1 Polarization: -19.08 SS G_CDS: -0.45 Total: -19.53 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 4.00 Total: 7.63 kcal Atomic # 7 Polarization: 4.26 SS G_CDS: -0.74 Total: 3.51 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -5.47 Total: -34.07 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.08 Total: -0.08 kcal Atomic # 16 Polarization: 11.58 SS G_CDS: -0.28 Total: 11.30 kcal Total: -30.36 -0.87 -31.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15508398_2726874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.534 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds