Wall clock time and date at job start Mon Mar 8 2021 10:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.09001 * 112.84877 * 311.19605 * 6 4 3 8 8 C 1.53782 * 113.61565 * 82.50321 * 6 4 3 9 9 C 1.53782 * 87.08434 * 139.97959 * 8 6 4 10 10 F 1.39897 * 113.68859 * 89.12597 * 9 8 6 11 11 C 1.52998 * 113.61716 * 220.01974 * 9 8 6 12 12 N 1.46494 * 109.46991 * 277.49737 * 11 9 8 13 13 S 1.65606 * 119.99962 * 165.00013 * 12 11 9 14 14 O 1.42100 * 106.40369 * 178.54014 * 13 12 11 15 15 O 1.42099 * 106.40096 * 311.46343 * 13 12 11 16 16 C 1.76202 * 107.21725 * 64.99712 * 13 12 11 17 17 C 1.38232 * 120.00225 * 269.72909 * 16 13 12 18 18 C 1.38235 * 120.00187 * 179.80777 * 17 16 13 19 19 C 1.38237 * 119.99513 * 0.42247 * 18 17 16 20 20 C 1.50704 * 119.99921 * 179.78743 * 19 18 17 21 21 O 1.42897 * 109.47564 * 120.01854 * 20 19 18 22 22 Si 1.86304 * 109.46985 * 0.02562 * 20 19 18 23 23 C 1.38234 * 120.00480 * 359.80734 * 19 18 17 24 24 C 1.38233 * 119.99738 * 90.00233 * 16 13 12 25 25 C 1.53779 * 113.61415 * 179.97438 * 6 4 3 26 26 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 31 31 H 1.08994 * 113.61836 * 254.53120 * 8 6 4 32 32 H 1.09000 * 113.61339 * 25.43325 * 8 6 4 33 33 H 1.09000 * 109.47127 * 37.49907 * 11 9 8 34 34 H 1.08998 * 109.47000 * 157.49664 * 11 9 8 35 35 H 0.96996 * 120.00259 * 344.99528 * 12 11 9 36 36 H 1.07996 * 120.00205 * 0.02562 * 17 16 13 37 37 H 1.07998 * 120.00325 * 180.20421 * 18 17 16 38 38 H 1.08995 * 109.47391 * 240.02470 * 20 19 18 39 39 H 0.96705 * 113.99666 * 300.00840 * 21 20 19 40 40 H 1.48497 * 109.99924 * 179.97438 * 22 20 19 41 41 H 1.48501 * 109.99841 * 301.31984 * 22 20 19 42 42 H 1.08001 * 120.00209 * 179.97438 * 23 19 18 43 43 H 1.08003 * 120.00491 * 359.97438 * 24 16 13 44 44 H 1.08996 * 113.61833 * 334.56770 * 25 6 4 45 45 H 1.08998 * 113.61403 * 105.47181 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.4715 3.5815 -0.7547 8 6 3.9859 3.5764 1.3984 9 6 5.3563 4.1421 0.9897 10 9 5.2851 5.3932 0.3677 11 6 6.3980 4.0934 2.1091 12 7 6.2193 5.2480 2.9930 13 16 6.9439 5.2710 4.4819 14 8 6.6113 6.5207 5.0708 15 8 6.6487 4.0216 5.0911 16 6 8.6853 5.2948 4.2141 17 6 9.3871 4.1072 4.1245 18 6 10.7527 4.1258 3.9105 19 6 11.4177 5.3322 3.7948 20 6 12.9072 5.3526 3.5662 21 8 13.1911 6.0198 2.3349 22 14 13.5473 3.6048 3.4872 23 6 10.7166 6.5198 3.8891 24 6 9.3505 6.5011 4.0993 25 6 5.4583 2.9680 0.0024 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.2288 4.3429 1.5636 32 1 4.0377 2.8496 2.2090 33 1 6.2732 3.1745 2.6820 34 1 7.3980 4.1187 1.6762 35 1 5.6766 5.9990 2.7061 36 1 8.8681 3.1648 4.2182 37 1 11.3005 3.1980 3.8371 38 1 13.3934 5.8809 4.3863 39 1 12.7891 5.6035 1.5602 40 1 15.0150 3.6112 3.2615 41 1 13.2301 2.8902 4.7497 42 1 11.2363 7.4623 3.7992 43 1 8.8028 7.4290 4.1733 44 1 5.9125 2.0749 0.4315 45 1 5.8902 3.2431 -0.9598 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15509220_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:34 Heat of formation + Delta-G solvation = -182.562463 kcal Electronic energy + Delta-G solvation = -32053.916512 eV Core-core repulsion = 27273.695514 eV Total energy + Delta-G solvation = -4780.220998 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.112 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.83039 -41.78240 -40.68970 -39.29881 -38.44412 -37.71189 -37.55040 -37.06177 -35.89398 -33.02335 -32.66576 -32.19902 -29.41883 -27.24490 -27.04879 -26.05640 -24.10121 -23.75067 -23.00649 -22.01105 -20.93782 -20.44816 -19.27741 -19.14139 -18.57992 -18.23844 -17.92298 -17.63459 -17.31397 -16.99911 -16.80248 -16.45692 -16.13172 -16.09391 -15.83670 -15.66776 -15.42427 -15.15088 -14.83843 -14.76448 -14.55340 -14.46186 -14.10245 -13.93445 -13.87602 -13.65660 -13.58051 -13.37716 -13.32516 -13.23945 -12.95670 -12.85512 -12.65763 -12.52091 -12.46452 -12.42201 -12.00745 -11.82495 -11.79288 -11.55331 -11.44357 -11.33897 -10.70943 -10.55685 -10.31939 -10.15592 -5.05131 -0.78719 -0.39224 0.18423 1.05969 1.22511 1.59453 1.62429 1.84215 1.93309 2.31845 2.66082 2.96082 3.01202 3.15627 3.30279 3.35143 3.39997 3.46645 3.50166 3.77162 3.83990 3.88235 3.98547 4.04901 4.18852 4.19723 4.25511 4.33233 4.33753 4.36694 4.45094 4.56790 4.59010 4.62295 4.68221 4.82663 4.83803 4.87344 4.89753 4.90159 4.93723 4.97941 5.13949 5.24005 5.24411 5.44145 5.69316 5.90512 6.65265 6.69302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.473 3.527 5 O -0.532 6.532 6 C -0.111 4.111 7 H 0.144 0.856 8 C -0.139 4.139 9 C 0.096 3.904 10 F -0.187 7.187 11 C 0.100 3.900 12 N -1.107 6.107 13 S 2.715 3.285 14 O -0.987 6.987 15 O -0.977 6.977 16 C -0.679 4.679 17 C -0.021 4.021 18 C -0.140 4.140 19 C -0.064 4.064 20 C -0.083 4.083 21 O -0.551 6.551 22 Si 0.781 3.219 23 C -0.123 4.123 24 C -0.027 4.027 25 C -0.126 4.126 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.429 0.571 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.113 0.887 39 H 0.398 0.602 40 H -0.299 1.299 41 H -0.283 1.283 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.122 0.878 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -2.550 -5.404 6.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.317 3.683 5 O -0.422 6.422 6 C -0.130 4.130 7 H 0.162 0.838 8 C -0.176 4.176 9 C 0.076 3.924 10 F -0.167 7.167 11 C -0.027 4.027 12 N -0.869 5.869 13 S 2.807 3.193 14 O -0.977 6.977 15 O -0.967 6.967 16 C -0.767 4.767 17 C -0.041 4.041 18 C -0.158 4.158 19 C -0.065 4.065 20 C -0.192 4.192 21 O -0.359 6.359 22 Si 0.687 3.313 23 C -0.142 4.142 24 C -0.046 4.046 25 C -0.164 4.164 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.266 0.734 36 H 0.181 0.819 37 H 0.175 0.825 38 H 0.130 0.870 39 H 0.248 0.752 40 H -0.227 1.227 41 H -0.210 1.210 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.141 0.859 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.353 -3.182 -3.816 4.981 hybrid contribution 0.296 0.958 -0.119 1.010 sum -0.058 -2.223 -3.935 4.520 Atomic orbital electron populations 1.21832 0.90960 1.04224 1.03663 1.23252 0.96771 0.79306 1.02621 1.86529 1.24441 1.33543 1.83386 1.23854 0.80532 0.92728 0.71168 1.90670 1.60997 1.43951 1.46537 1.22645 0.97803 0.90313 1.02260 0.83782 1.23689 0.97200 1.01315 0.95410 1.21784 0.96971 0.80470 0.93175 1.92885 1.97170 1.42999 1.83685 1.22051 1.00354 0.89436 0.90823 1.55176 1.66008 1.29298 1.36436 1.01048 0.73500 0.72425 0.72376 1.93577 1.83789 1.45055 1.75310 1.93575 1.83769 1.45032 1.74298 1.30826 1.26046 1.00125 1.19707 1.21209 0.94713 0.97263 0.90870 1.21412 0.94869 0.97929 1.01588 1.20864 0.96724 0.93942 0.94944 1.25345 0.92942 1.11036 0.89908 1.86504 1.76414 1.56868 1.16083 0.93696 0.78153 0.74208 0.85278 1.21313 0.93948 0.99033 0.99903 1.21142 0.95239 0.96916 0.91301 1.23615 0.93034 0.98261 1.01525 0.91343 0.91339 0.88593 0.91203 0.91263 0.87620 0.86874 0.86859 0.87647 0.73406 0.81905 0.82469 0.86958 0.75204 1.22727 1.21016 0.84132 0.83503 0.85937 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.71 10.22 -51.47 -0.53 -1.24 16 4 C 0.47 0.74 7.48 71.23 0.53 1.28 16 5 O -0.53 -3.62 15.65 21.97 0.34 -3.27 16 6 C -0.11 0.52 4.24 -11.02 -0.05 0.47 16 7 H 0.14 -1.01 8.14 -2.39 -0.02 -1.03 16 8 C -0.14 0.86 7.08 31.12 0.22 1.08 16 9 C 0.10 -0.65 1.73 -10.28 -0.02 -0.67 16 10 F -0.19 0.63 16.64 44.97 0.75 1.38 16 11 C 0.10 -0.79 5.91 86.38 0.51 -0.28 16 12 N -1.11 5.50 5.96 -187.51 -1.12 4.38 16 13 S 2.72 2.63 5.74 -56.49 -0.32 2.31 16 14 O -0.99 -7.86 17.28 -128.00 -2.21 -10.07 16 15 O -0.98 -5.58 16.75 -128.00 -2.14 -7.72 16 16 C -0.68 0.47 5.95 22.27 0.13 0.60 16 17 C -0.02 0.07 9.52 22.27 0.21 0.28 16 18 C -0.14 0.60 8.67 22.27 0.19 0.79 16 19 C -0.06 0.16 5.39 -19.86 -0.11 0.05 16 20 C -0.08 0.27 2.82 71.24 0.20 0.47 16 21 O -0.55 1.52 12.77 -148.98 -1.90 -0.39 16 22 Si 0.78 -3.75 29.79 68.60 2.04 -1.71 16 23 C -0.12 0.10 9.61 22.27 0.21 0.32 16 24 C -0.03 0.00 9.52 22.27 0.21 0.22 16 25 C -0.13 0.89 6.86 31.11 0.21 1.10 16 26 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.10 -0.68 8.14 -2.38 -0.02 -0.70 16 29 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 30 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 31 H 0.11 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.11 -0.73 7.91 -2.39 -0.02 -0.75 16 33 H 0.11 -1.08 7.55 -2.39 -0.02 -1.10 16 34 H 0.11 -1.26 8.14 -2.39 -0.02 -1.28 16 35 H 0.43 -2.71 8.19 -96.75 -0.79 -3.50 16 36 H 0.16 -1.15 7.61 -2.91 -0.02 -1.17 16 37 H 0.16 -1.42 4.88 -2.91 -0.01 -1.44 16 38 H 0.11 -0.21 7.96 -2.39 -0.02 -0.23 16 39 H 0.40 -4.43 8.70 -74.05 -0.64 -5.08 16 40 H -0.30 -0.98 7.11 99.48 0.71 -0.28 16 41 H -0.28 0.02 7.11 99.48 0.71 0.73 16 42 H 0.14 -0.29 8.06 -2.91 -0.02 -0.31 16 43 H 0.15 -0.23 7.62 -2.91 -0.02 -0.25 16 44 H 0.12 -0.86 7.39 -2.39 -0.02 -0.88 16 45 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 Total: 0.00 -26.66 395.41 -1.79 -28.45 By element: Atomic # 1 Polarization: -19.28 SS G_CDS: -0.35 Total: -19.63 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 3.66 Total: 7.51 kcal Atomic # 7 Polarization: 5.50 SS G_CDS: -1.12 Total: 4.38 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -6.44 Total: -22.69 kcal Atomic # 9 Polarization: 0.63 SS G_CDS: 0.75 Total: 1.38 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.04 Total: -1.71 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -0.32 Total: 2.31 kcal Total: -26.66 -1.79 -28.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15509220_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.112 kcal (2) G-P(sol) polarization free energy of solvation -26.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds