Wall clock time and date at job start Mon Mar 8 2021 10:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47135 * 2 1 4 4 C 1.34223 * 116.99863 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00177 * 179.97438 * 4 3 2 7 7 H 1.08995 * 112.85034 * 311.19847 * 6 4 3 8 8 C 1.53957 * 113.74218 * 82.39966 * 6 4 3 9 9 C 1.53774 * 87.02054 * 139.94718 * 8 6 4 10 10 F 1.39903 * 113.61680 * 89.22817 * 9 8 6 11 11 C 1.53002 * 113.61622 * 220.04601 * 9 8 6 12 12 N 1.46492 * 109.47381 * 279.13599 * 11 9 8 13 13 S 1.65608 * 119.99899 * 164.99702 * 12 11 9 14 14 O 1.42098 * 106.39975 * 311.46113 * 13 12 11 15 15 O 1.42103 * 106.40054 * 178.54011 * 13 12 11 16 16 C 1.76198 * 107.21737 * 65.00389 * 13 12 11 17 17 C 1.33383 * 125.20393 * 89.99625 * 16 13 12 18 18 C 1.50703 * 122.54063 * 0.06171 * 17 16 13 19 19 O 1.42896 * 109.47217 * 74.99859 * 18 17 16 20 20 Si 1.86299 * 109.46914 * 195.00057 * 18 17 16 21 21 C 1.38425 * 114.92174 * 180.02562 * 17 16 13 22 22 C 1.33390 * 114.92123 * 359.97438 * 21 17 16 23 23 S 1.75887 * 125.19968 * 270.04013 * 16 13 12 24 24 C 1.53777 * 87.17486 * 334.63872 * 9 8 6 25 25 H 1.09001 * 109.47006 * 299.99774 * 1 2 3 26 26 H 1.09004 * 109.47239 * 59.99933 * 1 2 3 27 27 H 1.09008 * 109.47476 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46848 * 239.99741 * 2 1 3 29 29 H 1.08996 * 109.47310 * 120.00345 * 2 1 3 30 30 H 1.09001 * 113.61267 * 25.42735 * 8 6 4 31 31 H 1.08998 * 113.66881 * 254.47655 * 8 6 4 32 32 H 1.09008 * 109.47027 * 159.13166 * 11 9 8 33 33 H 1.09002 * 109.46667 * 39.13923 * 11 9 8 34 34 H 0.97000 * 120.00274 * 345.00417 * 12 11 9 35 35 H 1.08997 * 109.46714 * 314.99600 * 18 17 16 36 36 H 0.96697 * 113.99932 * 180.02562 * 19 18 17 37 37 H 1.48505 * 109.99871 * 178.68029 * 20 18 17 38 38 H 1.48506 * 109.99815 * 299.99396 * 20 18 17 39 39 H 1.07997 * 122.54292 * 179.73691 * 21 17 16 40 40 H 1.08003 * 125.20243 * 179.97438 * 22 21 17 41 41 H 1.09003 * 113.61892 * 139.93504 * 24 9 8 42 42 H 1.08997 * 113.61755 * 270.76030 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9373 -0.0012 7 1 3.4709 3.5811 -0.7569 8 6 3.9860 3.5818 1.3955 9 6 5.3567 4.1441 0.9839 10 9 5.2852 5.3940 0.3594 11 6 6.3993 4.0979 2.1028 12 7 6.1981 5.2343 3.0051 13 16 6.9221 5.2474 4.4944 14 8 6.6513 3.9829 5.0833 15 8 6.5652 6.4808 5.1032 16 6 8.6626 5.3096 4.2276 17 6 9.3846 6.4259 4.1198 18 6 8.7729 7.7997 4.2186 19 8 8.4637 8.0864 5.5840 20 14 9.9803 9.0647 3.5764 21 6 10.7385 6.2271 3.9111 22 6 11.1161 4.9492 3.8499 23 16 9.7136 3.9090 4.0617 24 6 5.4582 2.9680 -0.0016 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.0374 2.8576 2.2086 31 1 3.2300 4.3499 1.5587 32 1 7.3987 4.1495 1.6706 33 1 6.2924 3.1676 2.6607 34 1 5.6407 5.9791 2.7302 35 1 7.8599 7.8344 3.6243 36 1 8.0655 8.9566 5.7227 37 1 9.3770 10.4203 3.6388 38 1 11.2296 9.0275 4.3785 39 1 11.4358 7.0446 3.8020 40 1 12.1280 4.6058 3.6931 41 1 5.8891 3.2414 -0.9648 42 1 5.9142 2.0762 0.4282 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15509220_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:38 Heat of formation + Delta-G solvation = -166.010711 kcal Electronic energy + Delta-G solvation = -31192.786774 eV Core-core repulsion = 26502.435760 eV Total energy + Delta-G solvation = -4690.351014 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.84450 -41.79873 -39.96334 -39.31613 -38.33520 -37.57606 -37.21383 -37.00442 -35.95369 -32.68106 -31.46435 -29.46033 -28.03943 -27.08753 -26.09623 -24.13338 -23.78160 -22.08629 -21.59299 -20.76021 -19.97415 -19.41474 -19.09014 -18.69597 -18.44024 -17.97517 -17.66710 -17.33938 -17.10601 -16.97919 -16.23364 -16.15802 -15.91993 -15.67910 -15.47791 -15.21901 -14.82911 -14.59372 -14.57576 -14.25982 -14.17664 -14.07084 -13.67593 -13.62961 -13.60673 -13.39898 -13.27685 -13.19415 -12.97284 -12.87860 -12.64245 -12.59131 -12.52274 -12.47068 -12.41575 -11.82191 -11.60327 -11.57016 -11.47948 -11.36991 -10.69218 -10.48937 -10.38630 -9.63412 -4.96418 -0.87655 -0.59273 0.30004 0.70062 1.03771 1.21869 1.23541 1.60161 1.60507 1.90018 1.92403 2.55221 2.92906 2.98565 3.15488 3.26439 3.32154 3.42925 3.47894 3.84647 3.85768 3.96669 3.97037 4.03521 4.13959 4.16751 4.22875 4.31857 4.36380 4.39994 4.52624 4.57252 4.63084 4.72209 4.80349 4.84198 4.87063 4.88865 4.94273 5.09535 5.12558 5.21127 5.42320 5.87741 6.59561 6.63338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.472 3.528 5 O -0.533 6.533 6 C -0.109 4.109 7 H 0.148 0.852 8 C -0.139 4.139 9 C 0.100 3.900 10 F -0.183 7.183 11 C 0.098 3.902 12 N -1.103 6.103 13 S 2.726 3.274 14 O -0.983 6.983 15 O -0.953 6.953 16 C -0.800 4.800 17 C 0.051 3.949 18 C -0.103 4.103 19 O -0.537 6.537 20 Si 0.781 3.219 21 C -0.179 4.179 22 C -0.145 4.145 23 S 0.218 5.782 24 C -0.128 4.128 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.431 0.569 35 H 0.092 0.908 36 H 0.394 0.606 37 H -0.283 1.283 38 H -0.283 1.283 39 H 0.170 0.830 40 H 0.211 0.789 41 H 0.110 0.890 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 0.543 -6.927 7.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.317 3.683 5 O -0.423 6.423 6 C -0.128 4.128 7 H 0.166 0.834 8 C -0.177 4.177 9 C 0.079 3.921 10 F -0.163 7.163 11 C -0.029 4.029 12 N -0.867 5.867 13 S 2.814 3.186 14 O -0.973 6.973 15 O -0.943 6.943 16 C -1.002 5.002 17 C 0.033 3.967 18 C -0.213 4.213 19 O -0.347 6.347 20 Si 0.684 3.316 21 C -0.208 4.208 22 C -0.282 4.282 23 S 0.485 5.515 24 C -0.166 4.166 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.269 0.731 35 H 0.110 0.890 36 H 0.245 0.755 37 H -0.210 1.210 38 H -0.209 1.209 39 H 0.187 0.813 40 H 0.228 0.772 41 H 0.129 0.871 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.702 -1.440 -5.786 6.201 hybrid contribution -0.256 2.038 0.560 2.129 sum 1.446 0.598 -5.226 5.455 Atomic orbital electron populations 1.21832 0.90869 1.04240 1.03698 1.23260 0.96834 0.79308 1.02594 1.86525 1.24358 1.33534 1.83368 1.23864 0.80563 0.92741 0.71164 1.90674 1.61039 1.43998 1.46557 1.22669 0.97620 0.90308 1.02211 0.83393 1.23714 0.97196 1.01332 0.95451 1.21724 0.96721 0.80707 0.92901 1.92892 1.97140 1.42809 1.83458 1.22033 1.00465 0.89743 0.90614 1.55211 1.64665 1.30809 1.35985 1.00778 0.72408 0.72931 0.72529 1.93575 1.84029 1.44567 1.75161 1.93623 1.82192 1.44814 1.73695 1.35536 1.30077 1.04437 1.30172 1.18314 0.93495 0.93164 0.91724 1.25183 1.07664 0.99901 0.88516 1.86559 1.83738 1.41120 1.23273 0.94243 0.75225 0.74348 0.87813 1.20487 0.94866 0.98865 1.06574 1.26598 1.04628 0.96149 1.00846 1.84327 0.96117 1.04599 1.66451 1.23619 0.93218 0.98110 1.01635 0.91349 0.91249 0.88588 0.91222 0.91324 0.87283 0.87268 0.87799 0.87706 0.73138 0.89045 0.75541 1.20990 1.20939 0.81252 0.77175 0.87110 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.55 10.29 71.98 0.74 1.29 16 2 C 0.05 0.02 6.19 71.98 0.45 0.47 16 3 O -0.36 -0.98 10.22 -51.35 -0.52 -1.50 16 4 C 0.47 1.24 7.49 71.24 0.53 1.77 16 5 O -0.53 -4.35 15.65 21.96 0.34 -4.01 16 6 C -0.11 0.42 4.23 -10.95 -0.05 0.37 16 7 H 0.15 -1.00 8.14 -2.39 -0.02 -1.02 16 8 C -0.14 0.69 7.09 31.18 0.22 0.91 16 9 C 0.10 -0.54 1.71 -10.27 -0.02 -0.56 16 10 F -0.18 0.61 16.70 44.97 0.75 1.36 16 11 C 0.10 -0.49 5.89 86.38 0.51 0.02 16 12 N -1.10 2.73 5.96 -187.49 -1.12 1.61 16 13 S 2.73 14.11 5.67 -56.49 -0.32 13.78 16 14 O -0.98 -10.86 17.38 -128.00 -2.22 -13.09 16 15 O -0.95 -9.36 14.29 -119.54 -1.71 -11.07 16 16 C -0.80 -2.68 6.54 66.72 0.44 -2.25 16 17 C 0.05 0.11 5.17 -20.92 -0.11 0.01 16 18 C -0.10 -0.15 1.78 71.24 0.13 -0.02 16 19 O -0.54 -3.41 11.10 -128.51 -1.43 -4.84 16 20 Si 0.78 -2.18 30.42 68.60 2.09 -0.09 16 21 C -0.18 0.29 8.75 21.22 0.19 0.48 16 22 C -0.14 0.60 11.23 66.72 0.75 1.35 16 23 S 0.22 -0.06 23.22 -56.49 -1.31 -1.37 16 24 C -0.13 0.72 6.86 31.12 0.21 0.93 16 25 H 0.07 -0.24 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 27 H 0.10 -0.62 8.14 -2.38 -0.02 -0.64 16 28 H 0.07 0.04 8.13 -2.38 -0.02 0.02 16 29 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 30 H 0.11 -0.48 7.94 -2.39 -0.02 -0.50 16 31 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.10 -0.91 8.14 -2.38 -0.02 -0.93 16 33 H 0.10 -0.53 7.59 -2.39 -0.02 -0.55 16 34 H 0.43 -2.30 8.24 -96.74 -0.80 -3.09 16 35 H 0.09 -0.15 7.16 -2.39 -0.02 -0.17 16 36 H 0.39 -0.25 8.74 -74.06 -0.65 -0.90 16 37 H -0.28 -0.48 7.11 99.48 0.71 0.23 16 38 H -0.28 -0.65 6.87 99.48 0.68 0.03 16 39 H 0.17 -0.87 5.57 -2.91 -0.02 -0.89 16 40 H 0.21 -2.35 8.06 -2.91 -0.02 -2.38 16 41 H 0.11 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.12 -0.57 7.40 -2.39 -0.02 -0.59 16 Total: 0.00 -26.11 381.76 -1.80 -27.91 By element: Atomic # 1 Polarization: -13.13 SS G_CDS: -0.34 Total: -13.47 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 3.99 Total: 4.77 kcal Atomic # 7 Polarization: 2.73 SS G_CDS: -1.12 Total: 1.61 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -5.54 Total: -34.50 kcal Atomic # 9 Polarization: 0.61 SS G_CDS: 0.75 Total: 1.36 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.09 Total: -0.09 kcal Atomic # 16 Polarization: 14.05 SS G_CDS: -1.63 Total: 12.41 kcal Total: -26.11 -1.80 -27.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15509220_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.100 kcal (2) G-P(sol) polarization free energy of solvation -26.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds