Wall clock time and date at job start Mon Mar 8 2021 10:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46969 * 2 1 4 4 C 1.34234 * 116.99347 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00172 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99503 * 179.97438 * 4 3 2 7 7 H 1.08995 * 112.84994 * 311.19603 * 6 4 3 8 8 C 1.53786 * 113.61283 * 82.50555 * 6 4 3 9 9 C 1.53782 * 87.07888 * 139.97694 * 8 6 4 10 10 F 1.39901 * 113.68956 * 89.12864 * 9 8 6 11 11 C 1.52996 * 113.61093 * 220.01404 * 9 8 6 12 12 N 1.46500 * 109.47548 * 277.49950 * 11 9 8 13 13 S 1.65598 * 120.00255 * 165.49846 * 12 11 9 14 14 O 1.42105 * 106.40366 * 178.45776 * 13 12 11 15 15 O 1.42103 * 106.40182 * 311.37627 * 13 12 11 16 16 C 1.76199 * 107.21849 * 64.91697 * 13 12 11 17 17 C 1.33390 * 122.53857 * 66.77626 * 16 13 12 18 18 C 1.50700 * 125.20532 * 0.02771 * 17 16 13 19 19 O 1.42902 * 109.46684 * 313.37927 * 18 17 16 20 20 Si 1.86294 * 109.47010 * 193.38255 * 18 17 16 21 21 S 1.75885 * 109.59032 * 179.90588 * 17 16 13 22 22 C 1.75888 * 90.97134 * 0.29898 * 21 17 16 23 23 C 1.33381 * 109.59328 * 359.83149 * 22 21 17 24 24 C 1.53770 * 87.08176 * 334.56667 * 9 8 6 25 25 H 1.09009 * 109.46857 * 299.99864 * 1 2 3 26 26 H 1.08999 * 109.47442 * 59.99372 * 1 2 3 27 27 H 1.09000 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46432 * 239.99990 * 2 1 3 29 29 H 1.08999 * 109.46917 * 120.00593 * 2 1 3 30 30 H 1.08996 * 113.61501 * 25.42859 * 8 6 4 31 31 H 1.09001 * 113.60787 * 254.52783 * 8 6 4 32 32 H 1.09001 * 109.47435 * 157.50111 * 11 9 8 33 33 H 1.08999 * 109.47236 * 37.50368 * 11 9 8 34 34 H 0.97007 * 120.00149 * 345.49796 * 12 11 9 35 35 H 1.08999 * 109.46776 * 73.37957 * 18 17 16 36 36 H 0.96695 * 114.00224 * 301.44117 * 19 18 17 37 37 H 1.48499 * 110.00512 * 58.68028 * 20 18 17 38 38 H 1.48506 * 109.99878 * 179.97438 * 20 18 17 39 39 H 1.07997 * 125.19931 * 179.85772 * 22 21 17 40 40 H 1.08000 * 122.54176 * 179.97438 * 23 22 21 41 41 H 1.09001 * 113.61369 * 139.98496 * 24 9 8 42 42 H 1.09007 * 113.61586 * 270.79485 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.4710 3.5811 -0.7570 8 6 3.9869 3.5772 1.3957 9 6 5.3570 4.1425 0.9856 10 9 5.2854 5.3934 0.3630 11 6 6.3995 4.0946 2.1044 12 7 6.2214 5.2496 2.9877 13 16 6.9571 5.2789 4.4710 14 8 6.6241 6.5287 5.0596 15 8 6.6713 4.0298 5.0854 16 6 8.6963 5.3089 4.1901 17 6 9.3144 6.3484 3.6274 18 6 8.6393 7.6131 3.1627 19 8 7.4723 7.2803 2.4080 20 14 9.8135 8.5870 2.0936 21 16 11.0383 6.0186 3.5137 22 6 10.8148 4.4373 4.2506 23 6 9.5240 4.2531 4.5315 24 6 5.4583 2.9680 -0.0016 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.0393 2.8508 2.2067 31 1 3.2299 4.3438 1.5609 32 1 7.3992 4.1195 1.6708 33 1 6.2750 3.1760 2.6778 34 1 5.6726 5.9974 2.7038 35 1 8.3541 8.2116 4.0279 36 1 7.6487 6.7286 1.6338 37 1 10.2348 7.7702 0.9271 38 1 9.1594 9.8364 1.6284 39 1 11.6024 3.7247 4.4461 40 1 9.1525 3.3486 4.9901 41 1 5.8892 3.2427 -0.9644 42 1 5.9143 2.0754 0.4269 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15509220_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:41 Heat of formation + Delta-G solvation = -163.854720 kcal Electronic energy + Delta-G solvation = -31812.508525 eV Core-core repulsion = 27122.251002 eV Total energy + Delta-G solvation = -4690.257523 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.86129 -41.82905 -39.71355 -39.32623 -38.43466 -37.67201 -37.49411 -36.97580 -35.78972 -32.70044 -31.81028 -29.42083 -27.50699 -27.10350 -26.07914 -24.39032 -23.78550 -22.05316 -21.79282 -20.81313 -20.04077 -19.37834 -19.15087 -18.63250 -18.32856 -17.79451 -17.55704 -17.23752 -17.01997 -16.94843 -16.50358 -16.13783 -16.10425 -15.57593 -15.44677 -15.19719 -15.14658 -14.76164 -14.59286 -14.15502 -14.10608 -14.01938 -13.87100 -13.68031 -13.60131 -13.33530 -13.29102 -13.16956 -12.99538 -12.90399 -12.85034 -12.57915 -12.53861 -12.48568 -12.28103 -11.82581 -11.64255 -11.59171 -11.46402 -11.37254 -11.04777 -10.49630 -10.13432 -9.74123 -5.10882 -0.73195 -0.49419 0.37716 0.64910 1.01063 1.08060 1.13332 1.52590 1.58268 1.85336 2.00825 2.66408 2.91794 2.97380 3.13845 3.16214 3.30086 3.32656 3.41490 3.48123 3.84186 3.94922 4.01376 4.10087 4.15717 4.24033 4.26127 4.29683 4.42511 4.45927 4.50420 4.55758 4.63324 4.74948 4.79806 4.83222 4.84690 4.86851 4.95368 5.10503 5.14585 5.19503 5.39828 6.03716 6.26728 6.60561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.473 3.527 5 O -0.533 6.533 6 C -0.110 4.110 7 H 0.146 0.854 8 C -0.138 4.138 9 C 0.100 3.900 10 F -0.183 7.183 11 C 0.103 3.897 12 N -1.096 6.096 13 S 2.729 3.271 14 O -0.979 6.979 15 O -0.989 6.989 16 C -0.676 4.676 17 C -0.106 4.106 18 C -0.081 4.081 19 O -0.526 6.526 20 Si 0.742 3.258 21 S 0.195 5.805 22 C -0.209 4.209 23 C -0.096 4.096 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.431 0.569 35 H 0.147 0.853 36 H 0.391 0.609 37 H -0.252 1.252 38 H -0.268 1.268 39 H 0.198 0.802 40 H 0.158 0.842 41 H 0.107 0.893 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -0.109 -3.554 4.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.317 3.683 5 O -0.423 6.423 6 C -0.129 4.129 7 H 0.164 0.836 8 C -0.176 4.176 9 C 0.080 3.920 10 F -0.163 7.163 11 C -0.023 4.023 12 N -0.861 5.861 13 S 2.818 3.182 14 O -0.970 6.970 15 O -0.979 6.979 16 C -0.778 4.778 17 C -0.228 4.228 18 C -0.191 4.191 19 O -0.336 6.336 20 Si 0.641 3.359 21 S 0.459 5.541 22 C -0.345 4.345 23 C -0.124 4.124 24 C -0.166 4.166 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.271 0.729 35 H 0.164 0.836 36 H 0.242 0.758 37 H -0.177 1.177 38 H -0.193 1.193 39 H 0.215 0.785 40 H 0.176 0.824 41 H 0.126 0.874 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.493 0.913 -3.579 5.816 hybrid contribution -1.655 -1.476 -0.447 2.262 sum 2.838 -0.563 -4.027 4.958 Atomic orbital electron populations 1.21832 0.90852 1.04260 1.03690 1.23265 0.96850 0.79277 1.02602 1.86531 1.24348 1.33575 1.83362 1.23861 0.80571 0.92727 0.71150 1.90671 1.61038 1.43985 1.46582 1.22640 0.97660 0.90324 1.02245 0.83626 1.23669 0.97316 1.01271 0.95341 1.21733 0.96854 0.80494 0.92954 1.92891 1.97152 1.42754 1.83550 1.21945 0.99963 0.89571 0.90868 1.55237 1.65423 1.28917 1.36503 1.00626 0.73104 0.72147 0.72354 1.93555 1.83418 1.44693 1.75289 1.93546 1.84070 1.45717 1.74590 1.29675 1.27491 1.02660 1.17982 1.25182 0.99419 0.98682 0.99495 1.25230 0.94478 0.95876 1.03513 1.86654 1.30051 1.73473 1.43375 0.94226 0.82383 0.78407 0.80928 1.84173 1.01974 1.11929 1.55976 1.26273 1.00779 1.00896 1.06539 1.19857 0.92545 0.98833 1.01141 1.23610 0.93150 0.98271 1.01527 0.91339 0.91288 0.88539 0.91247 0.91266 0.87188 0.87574 0.88122 0.87732 0.72897 0.83615 0.75804 1.17671 1.19278 0.78526 0.82417 0.87421 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.50 10.29 71.98 0.74 1.24 16 2 C 0.05 0.04 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.17 10.22 -51.46 -0.53 -1.70 16 4 C 0.47 1.48 7.48 71.24 0.53 2.02 16 5 O -0.53 -4.57 15.65 21.97 0.34 -4.22 16 6 C -0.11 0.35 4.24 -11.01 -0.05 0.30 16 7 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 8 C -0.14 0.60 7.08 31.12 0.22 0.82 16 9 C 0.10 -0.53 1.73 -10.27 -0.02 -0.55 16 10 F -0.18 0.56 16.64 44.97 0.75 1.30 16 11 C 0.10 -0.57 5.91 86.38 0.51 -0.06 16 12 N -1.10 2.26 3.90 -187.50 -0.73 1.53 16 13 S 2.73 12.43 4.94 -56.49 -0.28 12.15 16 14 O -0.98 -10.75 16.66 -124.54 -2.07 -12.82 16 15 O -0.99 -9.71 16.82 -128.00 -2.15 -11.86 16 16 C -0.68 -0.85 5.77 21.22 0.12 -0.73 16 17 C -0.11 0.13 5.73 24.59 0.14 0.27 16 18 C -0.08 0.15 2.07 71.24 0.15 0.29 16 19 O -0.53 1.00 8.64 -145.29 -1.25 -0.26 16 20 Si 0.74 -3.20 31.08 68.60 2.13 -1.07 16 21 S 0.20 -0.91 20.70 -56.49 -1.17 -2.08 16 22 C -0.21 0.78 11.23 66.72 0.75 1.53 16 23 C -0.10 0.01 9.69 21.22 0.21 0.22 16 24 C -0.13 0.67 6.86 31.12 0.21 0.88 16 25 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 26 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 29 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 30 H 0.11 -0.44 7.91 -2.39 -0.02 -0.46 16 31 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.10 -0.58 7.56 -2.39 -0.02 -0.59 16 34 H 0.43 -1.20 7.11 -96.74 -0.69 -1.89 16 35 H 0.15 -0.11 7.74 -2.39 -0.02 -0.13 16 36 H 0.39 -2.94 8.35 -74.06 -0.62 -3.56 16 37 H -0.25 0.59 7.11 99.48 0.71 1.30 16 38 H -0.27 -0.55 7.11 99.48 0.71 0.16 16 39 H 0.20 -1.73 8.06 -2.91 -0.02 -1.75 16 40 H 0.16 -0.11 7.74 -2.91 -0.02 -0.13 16 41 H 0.11 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.12 -0.53 7.40 -2.38 -0.02 -0.54 16 Total: 0.00 -22.96 378.87 -1.19 -24.15 By element: Atomic # 1 Polarization: -11.65 SS G_CDS: -0.19 Total: -11.84 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 3.96 Total: 6.72 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -0.73 Total: 1.53 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -5.66 Total: -30.87 kcal Atomic # 9 Polarization: 0.56 SS G_CDS: 0.75 Total: 1.30 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: 2.13 Total: -1.07 kcal Atomic # 16 Polarization: 11.52 SS G_CDS: -1.45 Total: 10.08 kcal Total: -22.96 -1.19 -24.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15509220_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.706 kcal (2) G-P(sol) polarization free energy of solvation -22.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds