Wall clock time and date at job start Mon Mar 8 2021 10:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.45195 * 109.47432 * 2 1 4 4 C 1.34222 * 117.00339 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00582 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99990 * 180.02562 * 4 3 2 7 7 H 1.08995 * 112.84892 * 311.19341 * 6 4 3 8 8 C 1.53950 * 113.66690 * 82.44276 * 6 4 3 9 9 C 1.53780 * 87.02244 * 139.93327 * 8 6 4 10 10 F 1.39892 * 113.61727 * 89.22620 * 9 8 6 11 11 C 1.53000 * 113.61511 * 220.04985 * 9 8 6 12 12 N 1.46504 * 109.46739 * 279.13299 * 11 9 8 13 13 S 1.65600 * 119.99834 * 165.00048 * 12 11 9 14 14 O 1.42097 * 106.40375 * 311.45945 * 13 12 11 15 15 O 1.42106 * 106.40275 * 178.53878 * 13 12 11 16 16 C 1.76205 * 107.22031 * 64.99971 * 13 12 11 17 17 C 1.33383 * 122.53823 * 89.97029 * 16 13 12 18 18 S 1.75889 * 109.59330 * 180.02562 * 17 16 13 19 19 C 1.75890 * 90.96802 * 0.02562 * 18 17 16 20 20 C 1.50702 * 125.19922 * 179.97438 * 19 18 17 21 21 O 1.42904 * 109.46584 * 245.02376 * 20 19 18 22 22 Si 1.86293 * 109.47414 * 5.02347 * 20 19 18 23 23 C 1.33390 * 109.59395 * 359.97438 * 19 18 17 24 24 C 1.53785 * 113.61130 * 180.02562 * 6 4 3 25 25 H 1.09002 * 109.47260 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47358 * 299.99467 * 1 2 3 27 27 H 1.09007 * 109.47357 * 59.99811 * 1 2 3 28 28 H 1.09004 * 109.46950 * 240.00323 * 2 1 3 29 29 H 1.08998 * 109.47428 * 120.00466 * 2 1 3 30 30 H 1.09000 * 113.61657 * 25.40656 * 8 6 4 31 31 H 1.09004 * 113.66317 * 254.45852 * 8 6 4 32 32 H 1.09001 * 109.47530 * 159.13576 * 11 9 8 33 33 H 1.09004 * 109.47245 * 39.12915 * 11 9 8 34 34 H 0.96997 * 120.00388 * 344.99960 * 12 11 9 35 35 H 1.07996 * 125.20664 * 0.06406 * 17 16 13 36 36 H 1.09002 * 109.47056 * 125.02564 * 20 19 18 37 37 H 0.96698 * 114.00443 * 60.00198 * 21 20 19 38 38 H 1.48503 * 110.00190 * 58.68025 * 22 20 19 39 39 H 1.48504 * 110.00113 * 180.02562 * 22 20 19 40 40 H 1.07999 * 122.53431 * 180.02562 * 23 19 18 41 41 H 1.08991 * 113.61343 * 105.47111 * 24 6 4 42 42 H 1.08997 * 113.61511 * 334.56413 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0012 7 1 3.4714 3.5816 -0.7546 8 6 3.9850 3.5789 1.3991 9 6 5.3560 4.1422 0.9896 10 9 5.2849 5.3932 0.3677 11 6 6.3978 4.0936 2.1091 12 7 6.1959 5.2282 3.0136 13 16 6.9190 5.2383 4.5033 14 8 6.6478 3.9726 5.0896 15 8 6.5616 6.4705 5.1145 16 6 8.6598 5.3011 4.2379 17 6 9.3297 6.4503 4.1405 18 16 11.0367 6.1176 3.8778 19 6 10.7354 4.3851 3.9155 20 6 11.7854 3.3170 3.7491 21 8 11.5332 2.5841 2.5486 22 14 13.4681 4.1102 3.6505 23 6 9.4355 4.1613 4.1138 24 6 5.4582 2.9680 0.0011 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 4.0358 2.8531 2.2107 31 1 3.2289 4.3468 1.5634 32 1 7.3975 4.1462 1.6777 33 1 6.2905 3.1622 2.6651 34 1 5.6388 5.9736 2.7398 35 1 8.8912 7.4346 4.2125 36 1 11.7526 2.6393 4.6022 37 1 11.5471 3.1250 1.7472 38 1 13.7294 4.9016 4.8797 39 1 14.5125 3.0673 3.4858 40 1 9.0198 3.1663 4.1730 41 1 5.8893 3.2435 -0.9613 42 1 5.9127 2.0748 0.4296 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15509220_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:45 Heat of formation + Delta-G solvation = -175.220687 kcal Electronic energy + Delta-G solvation = -30728.721566 eV Core-core repulsion = 26037.971178 eV Total energy + Delta-G solvation = -4690.750388 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.84416 -41.79993 -39.48878 -39.29751 -38.43097 -37.58101 -37.51567 -37.06449 -35.90346 -32.68288 -31.81589 -29.43615 -27.20691 -27.08268 -26.07848 -24.94154 -23.77381 -22.03088 -21.43816 -20.81942 -20.13820 -19.24856 -19.12038 -18.55695 -18.08107 -17.79695 -17.71590 -17.50377 -17.18029 -16.94652 -16.34642 -16.15327 -16.03563 -15.54442 -15.39656 -15.17148 -14.99203 -14.74478 -14.57502 -14.29273 -14.15376 -14.03722 -13.94945 -13.67653 -13.60851 -13.39428 -13.36694 -13.24917 -12.97397 -12.94568 -12.87541 -12.55066 -12.53227 -12.47553 -12.20623 -11.81299 -11.68860 -11.57197 -11.46230 -11.36025 -10.67643 -10.59968 -10.18917 -9.82986 -5.19914 -0.83313 -0.46919 0.33813 0.59065 0.97588 1.03864 1.17106 1.53830 1.60721 1.85020 1.98632 2.63106 2.93859 2.99086 3.14177 3.27568 3.32568 3.43567 3.45754 3.65029 3.86415 3.91365 3.96781 4.03431 4.16183 4.19603 4.26092 4.31653 4.38796 4.42445 4.54290 4.59055 4.62264 4.68474 4.81166 4.85280 4.87399 4.88779 4.90381 5.04774 5.12504 5.22145 5.42224 5.90882 6.63317 6.67700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.472 3.528 5 O -0.534 6.534 6 C -0.110 4.110 7 H 0.147 0.853 8 C -0.138 4.138 9 C 0.098 3.902 10 F -0.185 7.185 11 C 0.103 3.897 12 N -1.104 6.104 13 S 2.730 3.270 14 O -0.980 6.980 15 O -0.982 6.982 16 C -0.695 4.695 17 C -0.085 4.085 18 S 0.190 5.810 19 C -0.234 4.234 20 C -0.030 4.030 21 O -0.545 6.545 22 Si 0.732 3.268 23 C -0.057 4.057 24 C -0.128 4.128 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.430 0.570 35 H 0.203 0.797 36 H 0.121 0.879 37 H 0.398 0.602 38 H -0.267 1.267 39 H -0.270 1.270 40 H 0.155 0.845 41 H 0.108 0.892 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 2.734 -5.501 6.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.317 3.683 5 O -0.423 6.423 6 C -0.129 4.129 7 H 0.165 0.835 8 C -0.176 4.176 9 C 0.078 3.922 10 F -0.165 7.165 11 C -0.023 4.023 12 N -0.867 5.867 13 S 2.818 3.182 14 O -0.970 6.970 15 O -0.972 6.972 16 C -0.796 4.796 17 C -0.224 4.224 18 S 0.454 5.546 19 C -0.352 4.352 20 C -0.143 4.143 21 O -0.353 6.353 22 Si 0.635 3.365 23 C -0.086 4.086 24 C -0.166 4.166 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.267 0.733 35 H 0.220 0.780 36 H 0.138 0.862 37 H 0.248 0.752 38 H -0.193 1.193 39 H -0.196 1.196 40 H 0.173 0.827 41 H 0.127 0.873 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.509 2.741 -4.084 5.521 hybrid contribution -1.337 -0.990 0.068 1.665 sum 1.171 1.752 -4.016 4.535 Atomic orbital electron populations 1.21828 0.90842 1.04241 1.03712 1.23257 0.96851 0.79315 1.02571 1.86524 1.24359 1.33524 1.83372 1.23879 0.80556 0.92757 0.71150 1.90676 1.61039 1.44032 1.46572 1.22679 0.97626 0.90281 1.02301 0.83513 1.23708 0.97211 1.01329 0.95335 1.21762 0.96882 0.80497 0.93030 1.92886 1.97160 1.42810 1.83641 1.21969 1.00142 0.89863 0.90375 1.55153 1.64898 1.30806 1.35837 1.00696 0.72894 0.72368 0.72202 1.93568 1.84087 1.44161 1.75213 1.93580 1.83077 1.46140 1.74411 1.29794 1.27321 0.98798 1.23725 1.26237 0.97980 1.02339 0.95817 1.84274 1.05487 0.99062 1.65791 1.25181 0.99228 0.98299 1.12518 1.24529 1.04304 0.94457 0.91024 1.86519 1.94635 1.38015 1.16122 0.94286 0.74094 0.82005 0.86091 1.19691 0.92326 0.98641 0.97975 1.23617 0.93186 0.98221 1.01561 0.88595 0.91310 0.91256 0.91278 0.91325 0.87175 0.87284 0.87903 0.87544 0.73254 0.77986 0.86223 0.75201 1.19299 1.19578 0.82735 0.87334 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.03 10.22 -51.34 -0.52 -1.55 16 4 C 0.47 1.32 7.49 71.24 0.53 1.86 16 5 O -0.53 -4.52 15.65 21.97 0.34 -4.18 16 6 C -0.11 0.41 4.24 -10.95 -0.05 0.36 16 7 H 0.15 -0.96 8.14 -2.39 -0.02 -0.98 16 8 C -0.14 0.72 7.09 31.18 0.22 0.94 16 9 C 0.10 -0.57 1.71 -10.25 -0.02 -0.58 16 10 F -0.18 0.60 16.70 44.97 0.75 1.35 16 11 C 0.10 -0.64 5.90 86.38 0.51 -0.13 16 12 N -1.10 4.86 5.96 -187.48 -1.12 3.74 16 13 S 2.73 4.31 5.80 -56.49 -0.33 3.98 16 14 O -0.98 -7.73 17.10 -128.00 -2.19 -9.92 16 15 O -0.98 -7.05 17.64 -128.00 -2.26 -9.30 16 16 C -0.70 0.33 5.86 21.21 0.12 0.46 16 17 C -0.08 0.25 10.70 66.72 0.71 0.96 16 18 S 0.19 -0.82 20.60 -56.49 -1.16 -1.98 16 19 C -0.23 0.44 5.70 24.59 0.14 0.58 16 20 C -0.03 0.08 2.96 71.24 0.21 0.29 16 21 O -0.54 1.52 12.88 -148.98 -1.92 -0.40 16 22 Si 0.73 -2.66 30.98 68.60 2.13 -0.53 16 23 C -0.06 0.00 9.59 21.22 0.20 0.21 16 24 C -0.13 0.70 6.87 31.14 0.21 0.91 16 25 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 28 H 0.07 0.06 8.13 -2.38 -0.02 0.04 16 29 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 30 H 0.11 -0.53 7.94 -2.39 -0.02 -0.55 16 31 H 0.11 -0.75 8.14 -2.38 -0.02 -0.76 16 32 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.11 -0.67 7.59 -2.39 -0.02 -0.69 16 34 H 0.43 -2.82 8.24 -96.75 -0.80 -3.62 16 35 H 0.20 -1.40 8.00 -2.91 -0.02 -1.42 16 36 H 0.12 -0.17 7.96 -2.39 -0.02 -0.19 16 37 H 0.40 -4.47 8.70 -74.06 -0.64 -5.12 16 38 H -0.27 -0.29 7.11 99.48 0.71 0.42 16 39 H -0.27 -0.76 7.11 99.48 0.71 -0.06 16 40 H 0.16 -0.02 7.96 -2.91 -0.02 -0.05 16 41 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.12 -0.53 7.39 -2.39 -0.02 -0.54 16 Total: 0.00 -25.03 389.37 -2.61 -27.64 By element: Atomic # 1 Polarization: -16.13 SS G_CDS: -0.32 Total: -16.45 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 3.99 Total: 7.62 kcal Atomic # 7 Polarization: 4.86 SS G_CDS: -1.12 Total: 3.74 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -6.55 Total: -25.35 kcal Atomic # 9 Polarization: 0.60 SS G_CDS: 0.75 Total: 1.35 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.13 Total: -0.53 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.49 Total: 2.00 kcal Total: -25.03 -2.61 -27.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15509220_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.584 kcal (2) G-P(sol) polarization free energy of solvation -25.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds