Wall clock time and date at job start Mon Mar 8 2021 10:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47264 * 2 1 4 4 C 1.34227 * 117.00086 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99706 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00252 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.90708 * 311.25254 * 6 4 3 8 8 C 1.53785 * 113.61301 * 82.50119 * 6 4 3 9 9 C 1.53784 * 87.07822 * 139.98294 * 8 6 4 10 10 F 1.39906 * 113.68927 * 89.12842 * 9 8 6 11 11 C 1.52995 * 113.61485 * 220.02154 * 9 8 6 12 12 N 1.46509 * 109.47095 * 277.50059 * 11 9 8 13 13 S 1.65594 * 120.00263 * 165.00073 * 12 11 9 14 14 O 1.42104 * 106.40300 * 311.45654 * 13 12 11 15 15 O 1.42094 * 106.40491 * 178.53613 * 13 12 11 16 16 C 1.76201 * 107.21994 * 64.99683 * 13 12 11 17 17 C 1.33387 * 122.53836 * 96.22271 * 16 13 12 18 18 C 1.50702 * 125.20440 * 0.02562 * 17 16 13 19 19 S 1.75884 * 109.59363 * 179.74000 * 17 16 13 20 20 C 1.75889 * 90.96765 * 0.31093 * 19 17 16 21 21 C 1.50706 * 125.20147 * 179.97438 * 20 19 17 22 22 C 1.33383 * 109.59586 * 359.68684 * 20 19 17 23 23 C 1.50701 * 122.53937 * 180.21962 * 22 20 19 24 24 O 1.42905 * 109.47045 * 311.81341 * 23 22 20 25 25 Si 1.86288 * 109.47108 * 71.81719 * 23 22 20 26 26 C 1.53779 * 113.61605 * 180.02562 * 6 4 3 27 27 H 1.08996 * 109.47466 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46973 * 299.99859 * 1 2 3 29 29 H 1.08999 * 109.46962 * 59.99793 * 1 2 3 30 30 H 1.09004 * 109.46973 * 240.00141 * 2 1 3 31 31 H 1.08999 * 109.46962 * 120.00207 * 2 1 3 32 32 H 1.09000 * 113.60970 * 25.44109 * 8 6 4 33 33 H 1.08996 * 113.61466 * 254.53085 * 8 6 4 34 34 H 1.08992 * 109.47733 * 157.50219 * 11 9 8 35 35 H 1.09000 * 109.47608 * 37.49272 * 11 9 8 36 36 H 0.97005 * 119.99419 * 344.99669 * 12 11 9 37 37 H 1.09001 * 109.46784 * 84.06199 * 18 17 16 38 38 H 1.09004 * 109.46923 * 204.06562 * 18 17 16 39 39 H 1.08999 * 109.46958 * 324.05977 * 18 17 16 40 40 H 1.08994 * 109.47421 * 271.82956 * 21 20 19 41 41 H 1.09001 * 109.46977 * 151.82704 * 21 20 19 42 42 H 1.09000 * 109.47070 * 31.83296 * 21 20 19 43 43 H 1.09004 * 109.46651 * 191.81909 * 23 22 20 44 44 H 0.96695 * 114.00040 * 297.78565 * 24 23 22 45 45 H 1.48504 * 110.00245 * 65.77168 * 25 23 22 46 46 H 1.48505 * 110.00186 * 187.08867 * 25 23 22 47 47 H 1.09000 * 113.61684 * 105.47323 * 26 6 4 48 48 H 1.09001 * 113.61190 * 334.56339 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.4709 3.5829 -0.7542 8 6 3.9870 3.5760 1.3974 9 6 5.3571 4.1418 0.9876 10 9 5.2854 5.3932 0.3661 11 6 6.3998 4.0928 2.1061 12 7 6.2218 5.2471 2.9906 13 16 6.9477 5.2696 4.4788 14 8 6.6530 4.0201 5.0880 15 8 6.6157 6.5191 5.0684 16 6 8.6888 5.2935 4.2096 17 6 9.3997 6.4222 4.2117 18 6 8.8381 7.8022 4.4380 19 16 11.0940 6.0526 3.9181 20 6 10.7294 4.3363 3.7964 21 6 11.7400 3.2501 3.5315 22 6 9.4227 4.1424 3.9805 23 6 8.7928 2.7739 3.9414 24 8 9.2443 2.0747 2.7797 25 14 9.2797 1.8224 5.4672 26 6 5.4583 2.9680 -0.0013 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0396 2.8489 2.2077 33 1 3.2301 4.3425 1.5635 34 1 7.3994 4.1182 1.6725 35 1 6.2754 3.1738 2.6789 36 1 5.6788 5.9982 2.7044 37 1 8.7626 7.9927 5.5085 38 1 9.4970 8.5417 3.9828 39 1 7.8486 7.8704 3.9860 40 1 11.8547 3.1148 2.4561 41 1 11.3975 2.3178 3.9805 42 1 12.6989 3.5320 3.9666 43 1 7.7080 2.8741 3.9064 44 1 8.9957 2.4961 1.9457 45 1 8.6974 2.4641 6.6733 46 1 8.8089 0.4179 5.3618 47 1 5.8887 3.2438 -0.9640 48 1 5.9132 2.0746 0.4266 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15509220_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:51 Heat of formation + Delta-G solvation = -177.693932 kcal Electronic energy + Delta-G solvation = -36639.210260 eV Core-core repulsion = 31637.277386 eV Total energy + Delta-G solvation = -5001.932874 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.100 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.06316 -41.80846 -40.35565 -39.48617 -38.59293 -37.53514 -37.16901 -37.02331 -36.13203 -34.16473 -32.76700 -30.88546 -29.66600 -28.05501 -27.35096 -26.26455 -25.89507 -23.89416 -23.28530 -22.16191 -21.11638 -20.67916 -20.04412 -19.41975 -18.87979 -18.54720 -18.19172 -18.11134 -17.68815 -17.46469 -17.15177 -16.97556 -16.33717 -16.17872 -16.12354 -15.64966 -15.46483 -15.29541 -15.04576 -14.95044 -14.81029 -14.63869 -14.35328 -14.31307 -14.21614 -13.86394 -13.81363 -13.80330 -13.54900 -13.40285 -13.38589 -13.24713 -13.08686 -13.00961 -12.92485 -12.75295 -12.68254 -12.56742 -12.53671 -12.02831 -11.94411 -11.79666 -11.67783 -11.57297 -11.44745 -11.35209 -11.12095 -10.88155 -10.01560 -9.46315 -4.79236 -0.87575 -0.44185 0.36017 0.69376 0.82463 1.05953 1.47415 1.53343 1.81546 1.91164 2.16676 2.53361 2.68517 2.73939 2.90334 3.09751 3.17119 3.21213 3.40620 3.61584 3.68950 3.73380 3.84081 3.90599 3.93868 3.95330 4.00772 4.08107 4.13621 4.16110 4.23229 4.24933 4.29261 4.36791 4.45832 4.48274 4.55954 4.58578 4.61807 4.64069 4.67452 4.76264 4.88809 4.94851 4.97830 5.02234 5.05154 5.22665 5.39555 5.62168 6.41834 6.65857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.473 3.527 5 O -0.501 6.501 6 C -0.109 4.109 7 H 0.134 0.866 8 C -0.138 4.138 9 C 0.092 3.908 10 F -0.177 7.177 11 C 0.108 3.892 12 N -1.114 6.114 13 S 2.704 3.296 14 O -0.949 6.949 15 O -0.946 6.946 16 C -0.689 4.689 17 C -0.047 4.047 18 C -0.112 4.112 19 S 0.159 5.841 20 C -0.162 4.162 21 C -0.079 4.079 22 C -0.085 4.085 23 C -0.082 4.082 24 O -0.528 6.528 25 Si 0.737 3.263 26 C -0.132 4.132 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.425 0.575 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.361 0.639 45 H -0.241 1.241 46 H -0.247 1.247 47 H 0.100 0.900 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 1.295 -3.307 3.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.315 3.685 5 O -0.389 6.389 6 C -0.128 4.128 7 H 0.152 0.848 8 C -0.175 4.175 9 C 0.072 3.928 10 F -0.157 7.157 11 C -0.019 4.019 12 N -0.875 5.875 13 S 2.793 3.207 14 O -0.939 6.939 15 O -0.936 6.936 16 C -0.790 4.790 17 C -0.169 4.169 18 C -0.170 4.170 19 S 0.426 5.574 20 C -0.280 4.280 21 C -0.137 4.137 22 C -0.095 4.095 23 C -0.192 4.192 24 O -0.333 6.333 25 Si 0.633 3.367 26 C -0.170 4.170 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.208 0.792 45 H -0.165 1.165 46 H -0.171 1.171 47 H 0.118 0.882 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.559 0.856 -1.446 3.061 hybrid contribution -2.100 0.369 -1.673 2.711 sum 0.459 1.225 -3.119 3.383 Atomic orbital electron populations 1.21827 0.92248 1.03335 1.03703 1.23119 0.95685 0.79645 1.02854 1.86513 1.24136 1.32948 1.83572 1.23279 0.80862 0.91952 0.72363 1.90700 1.60508 1.42735 1.44913 1.22483 0.97105 0.91905 1.01320 0.84782 1.23638 0.96742 1.01244 0.95913 1.21827 0.96925 0.81008 0.93071 1.92903 1.97116 1.42257 1.83451 1.21872 0.99277 0.89618 0.91165 1.55450 1.66209 1.28640 1.37168 1.01635 0.73020 0.73797 0.72265 1.93555 1.83250 1.43877 1.73193 1.93618 1.83083 1.43034 1.73887 1.29411 1.27127 0.97871 1.24556 1.24580 0.97324 0.98495 0.96477 1.20928 1.02215 0.88841 1.05032 1.84468 1.05316 1.00835 1.66811 1.24421 0.97531 0.97753 1.08261 1.20417 0.95363 0.94811 1.03096 1.18544 0.93052 0.94532 1.03373 1.25687 1.00551 0.93431 0.99559 1.86810 1.80424 1.51353 1.14699 0.93749 0.90590 0.78550 0.73768 1.23637 0.93936 0.98310 1.01099 0.89932 0.91326 0.91336 0.90981 0.90992 0.87125 0.88027 0.90009 0.87983 0.73908 0.88101 0.90050 0.88384 0.89868 0.89207 0.90973 0.88911 0.79231 1.16538 1.17094 0.88167 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.27 10.29 37.16 0.38 0.65 16 2 C 0.06 0.00 6.19 37.16 0.23 0.23 16 3 O -0.35 -0.42 10.22 -39.25 -0.40 -0.83 16 4 C 0.47 0.55 7.48 36.00 0.27 0.82 16 5 O -0.50 -1.88 15.65 -18.75 -0.29 -2.18 16 6 C -0.11 0.18 4.24 -90.96 -0.39 -0.20 16 7 H 0.13 -0.39 8.14 -51.93 -0.42 -0.81 16 8 C -0.14 0.32 7.08 -25.92 -0.18 0.14 16 9 C 0.09 -0.22 1.73 -89.79 -0.16 -0.38 16 10 F -0.18 0.17 16.64 2.25 0.04 0.21 16 11 C 0.11 -0.26 5.08 -4.04 -0.02 -0.28 16 12 N -1.11 1.61 5.96 -10.61 -0.06 1.54 16 13 S 2.70 4.18 5.35 -107.50 -0.57 3.61 16 14 O -0.95 -3.81 14.09 -57.17 -0.81 -4.62 16 15 O -0.95 -3.17 14.83 -57.17 -0.85 -4.02 16 16 C -0.69 -0.76 5.86 -41.21 -0.24 -1.01 16 17 C -0.05 -0.02 6.50 -36.00 -0.23 -0.25 16 18 C -0.11 0.08 8.88 36.01 0.32 0.40 16 19 S 0.16 -0.08 23.31 -107.50 -2.51 -2.59 16 20 C -0.16 0.03 6.13 -36.00 -0.22 -0.19 16 21 C -0.08 0.16 9.12 36.01 0.33 0.49 16 22 C -0.08 -0.07 4.25 -106.25 -0.45 -0.52 16 23 C -0.08 -0.09 2.07 36.01 0.07 -0.01 16 24 O -0.53 0.30 11.11 -35.23 -0.39 -0.09 16 25 Si 0.74 1.59 30.07 -169.99 -5.11 -3.52 16 26 C -0.13 0.34 6.86 -25.90 -0.18 0.16 16 27 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 28 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 29 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 30 H 0.07 0.00 8.13 -51.93 -0.42 -0.42 16 31 H 0.07 0.00 8.13 -51.93 -0.42 -0.42 16 32 H 0.11 -0.26 7.91 -51.93 -0.41 -0.67 16 33 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 34 H 0.08 -0.33 7.73 -51.93 -0.40 -0.74 16 35 H 0.10 -0.26 6.22 -51.93 -0.32 -0.59 16 36 H 0.42 -1.11 8.19 -34.47 -0.28 -1.40 16 37 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 39 H 0.10 -0.07 6.43 -51.93 -0.33 -0.40 16 40 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 41 H 0.09 -0.19 4.80 -51.93 -0.25 -0.44 16 42 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 43 H 0.09 0.11 2.73 -51.93 -0.14 -0.03 16 44 H 0.36 -1.36 8.69 45.56 0.40 -0.96 16 45 H -0.24 -1.17 7.11 56.52 0.40 -0.77 16 46 H -0.25 -1.05 7.11 56.52 0.40 -0.65 16 47 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 48 H 0.12 -0.29 7.39 -51.93 -0.38 -0.68 16 LS Contribution 410.98 15.07 6.19 6.19 Total: 0.00 -9.21 410.98 -11.63 -20.84 By element: Atomic # 1 Polarization: -8.19 SS G_CDS: -6.40 Total: -14.60 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.47 Total: 0.04 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -0.06 Total: 1.54 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -2.74 Total: -11.72 kcal Atomic # 9 Polarization: 0.17 SS G_CDS: 0.04 Total: 0.21 kcal Atomic # 14 Polarization: 1.59 SS G_CDS: -5.11 Total: -3.52 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -3.08 Total: 1.01 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -9.21 -11.63 -20.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15509220_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.857 kcal (2) G-P(sol) polarization free energy of solvation -9.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds