Wall clock time and date at job start Mon Mar 8 2021 10:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47264 * 2 1 4 4 C 1.34227 * 117.00086 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99706 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00252 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.90708 * 311.25254 * 6 4 3 8 8 C 1.53785 * 113.61301 * 82.50119 * 6 4 3 9 9 C 1.53784 * 87.07822 * 139.98294 * 8 6 4 10 10 F 1.39906 * 113.68927 * 89.12842 * 9 8 6 11 11 C 1.52995 * 113.61485 * 220.02154 * 9 8 6 12 12 N 1.46509 * 109.47095 * 277.50059 * 11 9 8 13 13 S 1.65594 * 120.00263 * 165.00073 * 12 11 9 14 14 O 1.42104 * 106.40300 * 311.45654 * 13 12 11 15 15 O 1.42094 * 106.40491 * 178.53613 * 13 12 11 16 16 C 1.76201 * 107.21994 * 64.99683 * 13 12 11 17 17 C 1.33387 * 122.53836 * 96.22271 * 16 13 12 18 18 C 1.50702 * 125.20440 * 0.02562 * 17 16 13 19 19 S 1.75884 * 109.59363 * 179.74000 * 17 16 13 20 20 C 1.75889 * 90.96765 * 0.31093 * 19 17 16 21 21 C 1.50706 * 125.20147 * 179.97438 * 20 19 17 22 22 C 1.33383 * 109.59586 * 359.68684 * 20 19 17 23 23 C 1.50701 * 122.53937 * 180.21962 * 22 20 19 24 24 O 1.42905 * 109.47045 * 311.81341 * 23 22 20 25 25 Si 1.86288 * 109.47108 * 71.81719 * 23 22 20 26 26 C 1.53779 * 113.61605 * 180.02562 * 6 4 3 27 27 H 1.08996 * 109.47466 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46973 * 299.99859 * 1 2 3 29 29 H 1.08999 * 109.46962 * 59.99793 * 1 2 3 30 30 H 1.09004 * 109.46973 * 240.00141 * 2 1 3 31 31 H 1.08999 * 109.46962 * 120.00207 * 2 1 3 32 32 H 1.09000 * 113.60970 * 25.44109 * 8 6 4 33 33 H 1.08996 * 113.61466 * 254.53085 * 8 6 4 34 34 H 1.08992 * 109.47733 * 157.50219 * 11 9 8 35 35 H 1.09000 * 109.47608 * 37.49272 * 11 9 8 36 36 H 0.97005 * 119.99419 * 344.99669 * 12 11 9 37 37 H 1.09001 * 109.46784 * 84.06199 * 18 17 16 38 38 H 1.09004 * 109.46923 * 204.06562 * 18 17 16 39 39 H 1.08999 * 109.46958 * 324.05977 * 18 17 16 40 40 H 1.08994 * 109.47421 * 271.82956 * 21 20 19 41 41 H 1.09001 * 109.46977 * 151.82704 * 21 20 19 42 42 H 1.09000 * 109.47070 * 31.83296 * 21 20 19 43 43 H 1.09004 * 109.46651 * 191.81909 * 23 22 20 44 44 H 0.96695 * 114.00040 * 297.78565 * 24 23 22 45 45 H 1.48504 * 110.00245 * 65.77168 * 25 23 22 46 46 H 1.48505 * 110.00186 * 187.08867 * 25 23 22 47 47 H 1.09000 * 113.61684 * 105.47323 * 26 6 4 48 48 H 1.09001 * 113.61190 * 334.56339 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.4709 3.5829 -0.7542 8 6 3.9870 3.5760 1.3974 9 6 5.3571 4.1418 0.9876 10 9 5.2854 5.3932 0.3661 11 6 6.3998 4.0928 2.1061 12 7 6.2218 5.2471 2.9906 13 16 6.9477 5.2696 4.4788 14 8 6.6530 4.0201 5.0880 15 8 6.6157 6.5191 5.0684 16 6 8.6888 5.2935 4.2096 17 6 9.3997 6.4222 4.2117 18 6 8.8381 7.8022 4.4380 19 16 11.0940 6.0526 3.9181 20 6 10.7294 4.3363 3.7964 21 6 11.7400 3.2501 3.5315 22 6 9.4227 4.1424 3.9805 23 6 8.7928 2.7739 3.9414 24 8 9.2443 2.0747 2.7797 25 14 9.2797 1.8224 5.4672 26 6 5.4583 2.9680 -0.0013 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0396 2.8489 2.2077 33 1 3.2301 4.3425 1.5635 34 1 7.3994 4.1182 1.6725 35 1 6.2754 3.1738 2.6789 36 1 5.6788 5.9982 2.7044 37 1 8.7626 7.9927 5.5085 38 1 9.4970 8.5417 3.9828 39 1 7.8486 7.8704 3.9860 40 1 11.8547 3.1148 2.4561 41 1 11.3975 2.3178 3.9805 42 1 12.6989 3.5320 3.9666 43 1 7.7080 2.8741 3.9064 44 1 8.9957 2.4961 1.9457 45 1 8.6974 2.4641 6.6733 46 1 8.8089 0.4179 5.3618 47 1 5.8887 3.2438 -0.9640 48 1 5.9132 2.0746 0.4266 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_15509220_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:49 Heat of formation + Delta-G solvation = -177.051075 kcal Electronic energy + Delta-G solvation = -36639.182384 eV Core-core repulsion = 31637.277386 eV Total energy + Delta-G solvation = -5001.904998 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.100 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -48.93110 -41.85140 -40.34705 -39.39041 -38.74345 -37.62536 -37.22288 -37.14067 -36.04831 -34.09353 -32.71722 -30.78861 -29.55612 -28.05702 -27.15698 -26.19113 -25.84022 -23.82878 -23.28724 -22.12908 -21.07637 -20.63446 -20.03690 -19.43555 -18.89664 -18.56795 -18.17674 -18.10560 -17.73238 -17.39414 -17.05020 -16.96027 -16.27716 -16.22667 -16.11963 -15.58290 -15.44971 -15.23180 -15.08598 -14.88398 -14.78052 -14.61960 -14.29639 -14.18341 -14.11449 -13.95072 -13.73483 -13.67360 -13.55045 -13.48379 -13.44225 -13.31681 -13.01653 -12.93995 -12.89989 -12.73685 -12.59070 -12.52358 -12.46929 -12.32009 -11.90949 -11.77552 -11.60761 -11.53457 -11.50709 -11.38316 -11.09712 -10.75733 -9.96964 -9.43883 -5.01829 -0.94087 -0.43367 0.40153 0.71316 0.79087 0.99379 1.32934 1.55962 1.64933 1.83307 1.96514 2.47263 2.84942 2.88490 3.01870 3.16616 3.25706 3.35879 3.43488 3.66780 3.75802 3.78846 3.93458 3.98482 4.00098 4.06235 4.11245 4.14145 4.21884 4.28365 4.31647 4.41297 4.48857 4.53605 4.55379 4.61282 4.71285 4.74260 4.79262 4.80417 4.84999 4.85641 4.94639 5.09215 5.09944 5.13714 5.18813 5.35800 5.38499 5.77770 6.58968 6.63351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.472 3.528 5 O -0.532 6.532 6 C -0.109 4.109 7 H 0.148 0.852 8 C -0.140 4.140 9 C 0.099 3.901 10 F -0.183 7.183 11 C 0.099 3.901 12 N -1.104 6.104 13 S 2.712 3.288 14 O -0.980 6.980 15 O -0.970 6.970 16 C -0.697 4.697 17 C -0.057 4.057 18 C -0.118 4.118 19 S 0.186 5.814 20 C -0.160 4.160 21 C -0.083 4.083 22 C -0.098 4.098 23 C -0.076 4.076 24 O -0.530 6.530 25 Si 0.781 3.219 26 C -0.127 4.127 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.431 0.569 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.378 0.622 45 H -0.285 1.285 46 H -0.279 1.279 47 H 0.111 0.889 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 2.033 -4.694 5.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.316 3.684 5 O -0.422 6.422 6 C -0.128 4.128 7 H 0.166 0.834 8 C -0.178 4.178 9 C 0.079 3.921 10 F -0.163 7.163 11 C -0.028 4.028 12 N -0.867 5.867 13 S 2.803 3.197 14 O -0.970 6.970 15 O -0.960 6.960 16 C -0.798 4.798 17 C -0.179 4.179 18 C -0.176 4.176 19 S 0.452 5.548 20 C -0.278 4.278 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.188 4.188 24 O -0.336 6.336 25 Si 0.684 3.316 26 C -0.165 4.165 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.269 0.731 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.228 0.772 45 H -0.212 1.212 46 H -0.205 1.205 47 H 0.130 0.870 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.451 1.607 -2.843 4.751 hybrid contribution -2.387 0.117 -1.241 2.693 sum 1.064 1.724 -4.084 4.559 Atomic orbital electron populations 1.21830 0.90818 1.04261 1.03713 1.23265 0.96871 0.79276 1.02584 1.86525 1.24330 1.33558 1.83365 1.23851 0.80598 0.92723 0.71223 1.90680 1.61029 1.43965 1.46488 1.22632 0.97675 0.90379 1.02107 0.83385 1.23690 0.97221 1.01355 0.95506 1.21736 0.96698 0.80685 0.92938 1.92894 1.97134 1.42732 1.83577 1.22088 1.00506 0.89168 0.91009 1.55166 1.65943 1.29231 1.36345 1.01089 0.73300 0.72696 0.72648 1.93521 1.83968 1.45012 1.74465 1.93582 1.83678 1.43697 1.75014 1.29281 1.26596 0.98435 1.25519 1.24772 0.98107 0.98700 0.96306 1.21019 1.02674 0.88929 1.04970 1.84374 1.04128 1.00249 1.66042 1.24709 0.97518 0.98558 1.06981 1.20557 0.95418 0.94175 1.03972 1.18494 0.93528 0.94093 1.04709 1.25403 1.00339 0.93455 0.99584 1.86755 1.80360 1.51406 1.15104 0.93286 0.89784 0.75889 0.72686 1.23642 0.93268 0.98056 1.01580 0.88569 0.91355 0.91207 0.91187 0.91388 0.87348 0.87251 0.87940 0.87950 0.73124 0.88515 0.88094 0.88551 0.88692 0.89108 0.89643 0.89088 0.77222 1.21164 1.20518 0.87045 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 10.29 71.98 0.74 1.25 16 2 C 0.05 0.04 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.09 10.22 -51.39 -0.53 -1.61 16 4 C 0.47 1.36 7.48 71.23 0.53 1.90 16 5 O -0.53 -4.50 15.65 21.96 0.34 -4.16 16 6 C -0.11 0.39 4.24 -11.01 -0.05 0.35 16 7 H 0.15 -0.97 8.14 -2.39 -0.02 -0.99 16 8 C -0.14 0.67 7.08 31.12 0.22 0.89 16 9 C 0.10 -0.54 1.73 -10.25 -0.02 -0.56 16 10 F -0.18 0.54 16.64 44.97 0.75 1.28 16 11 C 0.10 -0.52 5.08 86.38 0.44 -0.08 16 12 N -1.10 3.07 5.96 -187.49 -1.12 1.95 16 13 S 2.71 10.79 5.35 -56.49 -0.30 10.49 16 14 O -0.98 -9.41 14.09 -128.00 -1.80 -11.22 16 15 O -0.97 -7.58 14.83 -128.00 -1.90 -9.48 16 16 C -0.70 -1.62 5.86 21.22 0.12 -1.50 16 17 C -0.06 -0.03 6.50 24.59 0.16 0.13 16 18 C -0.12 0.17 8.88 71.24 0.63 0.81 16 19 S 0.19 -0.42 23.31 -56.49 -1.32 -1.73 16 20 C -0.16 0.23 6.13 24.59 0.15 0.38 16 21 C -0.08 0.46 9.12 71.24 0.65 1.11 16 22 C -0.10 -0.13 4.25 -20.92 -0.09 -0.21 16 23 C -0.08 -0.17 2.07 71.24 0.15 -0.03 16 24 O -0.53 1.06 11.11 -148.98 -1.66 -0.60 16 25 Si 0.78 4.51 30.07 68.60 2.06 6.58 16 26 C -0.13 0.73 6.86 31.13 0.21 0.94 16 27 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 29 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.07 0.07 8.13 -2.38 -0.02 0.05 16 31 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 32 H 0.11 -0.45 7.91 -2.39 -0.02 -0.47 16 33 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.10 -0.96 7.73 -2.39 -0.02 -0.98 16 35 H 0.10 -0.51 6.22 -2.39 -0.01 -0.53 16 36 H 0.43 -2.25 8.19 -96.74 -0.79 -3.05 16 37 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.10 -0.12 6.43 -2.39 -0.02 -0.13 16 40 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.09 -0.48 4.80 -2.39 -0.01 -0.50 16 42 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.09 0.27 2.73 -2.39 -0.01 0.26 16 44 H 0.38 -3.46 8.69 -74.06 -0.64 -4.10 16 45 H -0.28 -3.62 7.11 99.48 0.71 -2.91 16 46 H -0.28 -2.99 7.11 99.48 0.71 -2.28 16 47 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 48 H 0.12 -0.61 7.39 -2.39 -0.02 -0.62 16 Total: 0.00 -22.13 410.98 -1.52 -23.65 By element: Atomic # 1 Polarization: -20.66 SS G_CDS: -0.36 Total: -21.02 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 4.30 Total: 5.86 kcal Atomic # 7 Polarization: 3.07 SS G_CDS: -1.12 Total: 1.95 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -5.54 Total: -27.06 kcal Atomic # 9 Polarization: 0.54 SS G_CDS: 0.75 Total: 1.28 kcal Atomic # 14 Polarization: 4.51 SS G_CDS: 2.06 Total: 6.58 kcal Atomic # 16 Polarization: 10.38 SS G_CDS: -1.62 Total: 8.76 kcal Total: -22.13 -1.52 -23.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15509220_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.400 kcal (2) G-P(sol) polarization free energy of solvation -22.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds