Wall clock time and date at job start Mon Mar 8 2021 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00091 * 2 1 4 4 H 1.09006 * 109.46822 * 238.90247 * 3 2 1 5 5 C 1.52994 * 109.47260 * 358.90031 * 3 2 1 6 6 C 1.53000 * 109.47224 * 60.00168 * 5 3 2 7 7 C 1.52998 * 109.47299 * 59.99846 * 6 5 3 8 8 H 1.08996 * 109.47283 * 60.00231 * 7 6 5 9 9 O 1.42897 * 109.47621 * 180.02562 * 7 6 5 10 10 C 1.53008 * 109.47053 * 300.00305 * 7 6 5 11 11 C 1.52999 * 109.47029 * 59.99959 * 10 7 6 12 12 S 1.65598 * 119.99687 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40247 * 203.54066 * 12 2 1 14 14 O 1.42106 * 106.40252 * 336.45646 * 12 2 1 15 15 C 1.76200 * 107.22148 * 90.00006 * 12 2 1 16 16 C 1.38239 * 119.99698 * 269.72728 * 15 12 2 17 17 C 1.38236 * 119.99829 * 179.76487 * 16 15 12 18 18 C 1.38236 * 119.99788 * 0.48182 * 17 16 15 19 19 C 1.50700 * 120.00115 * 179.76477 * 18 17 16 20 20 O 1.42903 * 109.46638 * 120.02501 * 19 18 17 21 21 Si 1.86296 * 109.47008 * 0.02926 * 19 18 17 22 22 C 1.38234 * 120.00172 * 359.79417 * 18 17 16 23 23 C 1.38234 * 120.00079 * 359.95322 * 22 18 17 24 24 H 1.08998 * 109.47096 * 264.41699 * 1 2 3 25 25 H 1.09006 * 109.47176 * 24.41368 * 1 2 3 26 26 H 1.09003 * 109.47115 * 144.40912 * 1 2 3 27 27 H 1.09004 * 109.47308 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.47644 * 299.99950 * 5 3 2 29 29 H 1.09002 * 109.47459 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.46984 * 300.00299 * 6 5 3 31 31 H 0.96696 * 114.00643 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.46873 * 180.02562 * 10 7 6 33 33 H 1.08996 * 109.47016 * 300.00090 * 10 7 6 34 34 H 1.08996 * 109.46931 * 180.02562 * 11 10 7 35 35 H 1.08997 * 109.47525 * 59.99846 * 11 10 7 36 36 H 1.08002 * 120.00106 * 359.97438 * 16 15 12 37 37 H 1.07994 * 120.00471 * 180.25372 * 17 16 15 38 38 H 1.08990 * 109.47765 * 240.02422 * 19 18 17 39 39 H 0.96703 * 114.00290 * 299.99688 * 20 19 18 40 40 H 1.48504 * 110.00263 * 58.67422 * 21 19 18 41 41 H 1.48498 * 110.00053 * 179.97438 * 21 19 18 42 42 H 1.08005 * 120.00508 * 179.97438 * 22 18 17 43 43 H 1.08003 * 120.00643 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 2.8389 1.3179 -0.8800 5 6 1.2036 2.4315 -0.0277 6 6 0.3034 2.3624 1.2075 7 6 1.1621 2.4555 2.4703 8 1 1.7071 3.3994 2.4704 9 8 0.3214 2.3904 3.6240 10 6 2.1561 1.2926 2.4980 11 6 3.0563 1.3618 1.2628 12 16 2.2929 -1.4342 -0.0006 13 8 3.5759 -1.1571 0.5439 14 8 1.4112 -2.4068 0.5435 15 6 2.5537 -1.8852 -1.6838 16 6 1.6219 -2.6654 -2.3427 17 6 1.8241 -3.0152 -3.6646 18 6 2.9630 -2.5932 -4.3248 19 6 3.1861 -2.9789 -5.7644 20 8 3.2828 -1.7986 -6.5642 21 14 1.7568 -4.0159 -6.3581 22 6 3.8975 -1.8178 -3.6643 23 6 3.6928 -1.4636 -2.3439 24 1 -0.3633 -0.1000 1.0228 25 1 -0.3634 0.9358 -0.4248 26 1 -0.3633 -0.8357 -0.5981 27 1 1.7486 3.3755 -0.0272 28 1 0.5918 2.3653 -0.9274 29 1 -0.4051 3.1906 1.1876 30 1 -0.2417 1.4184 1.2075 31 1 0.7996 2.4433 4.4628 32 1 2.7675 1.3587 3.3979 33 1 1.6111 0.3487 2.4980 34 1 3.7641 0.5331 1.2823 35 1 3.6014 2.3057 1.2628 36 1 0.7343 -2.9988 -1.8255 37 1 1.0943 -3.6213 -4.1806 38 1 4.1098 -3.5513 -5.8483 39 1 2.4941 -1.2397 -6.5375 40 1 0.4872 -3.2582 -6.2190 41 1 1.9644 -4.4024 -7.7768 42 1 4.7875 -1.4884 -4.1799 43 1 4.4227 -0.8574 -1.8279 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_15557740_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:20 Heat of formation + Delta-G solvation = -95.069378 kcal Electronic energy + Delta-G solvation = -27614.346180 eV Core-core repulsion = 23754.281476 eV Total energy + Delta-G solvation = -3860.064705 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.93413 -40.78585 -38.35823 -37.93025 -37.56056 -36.87566 -34.31910 -33.11040 -32.33184 -32.28565 -30.31951 -27.35993 -26.90412 -24.18037 -23.84986 -23.10978 -22.90721 -21.36510 -20.07984 -19.13339 -18.54002 -18.35780 -18.05879 -17.35101 -17.11549 -16.54862 -16.48211 -16.17844 -15.94286 -15.72691 -15.46224 -15.18405 -14.90102 -14.66027 -14.56521 -14.30432 -14.10777 -13.95774 -13.80671 -13.50895 -13.13614 -13.03325 -12.96279 -12.87526 -12.73968 -12.73554 -12.56944 -12.12996 -11.93028 -11.88321 -11.82672 -11.55038 -11.14098 -10.88514 -10.55528 -10.47627 -10.22982 -10.09839 -5.10378 -0.77536 -0.40962 0.10035 1.08444 1.44314 1.76123 1.81829 2.27863 2.67687 3.09907 3.13666 3.20787 3.36289 3.43676 3.60677 3.64552 3.70244 3.87210 3.92571 4.04817 4.06423 4.17971 4.21792 4.29116 4.31355 4.34337 4.40498 4.42734 4.48303 4.51152 4.67539 4.71989 4.73921 4.80246 4.86171 4.89054 5.00466 5.06200 5.10343 5.14399 5.17139 5.23913 5.47921 5.53290 5.60532 6.18365 6.71989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.992 5.992 3 C 0.155 3.845 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.145 4.145 7 C 0.106 3.894 8 H 0.053 0.947 9 O -0.569 6.569 10 C -0.149 4.149 11 C -0.167 4.167 12 S 2.689 3.311 13 O -0.947 6.947 14 O -0.950 6.950 15 C -0.675 4.675 16 C -0.016 4.016 17 C -0.138 4.138 18 C -0.062 4.062 19 C -0.084 4.084 20 O -0.525 6.525 21 Si 0.687 3.313 22 C -0.114 4.114 23 C -0.019 4.019 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.379 0.621 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.377 0.623 40 H -0.257 1.257 41 H -0.253 1.253 42 H 0.137 0.863 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 1.605 -1.933 2.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.831 5.831 3 C 0.049 3.951 4 H 0.097 0.903 5 C -0.156 4.156 6 C -0.182 4.182 7 C 0.047 3.953 8 H 0.071 0.929 9 O -0.375 6.375 10 C -0.186 4.186 11 C -0.206 4.206 12 S 2.781 3.219 13 O -0.937 6.937 14 O -0.940 6.940 15 C -0.761 4.761 16 C -0.035 4.035 17 C -0.156 4.156 18 C -0.063 4.063 19 C -0.194 4.194 20 O -0.332 6.332 21 Si 0.588 3.412 22 C -0.132 4.132 23 C -0.038 4.038 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.226 0.774 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.225 0.775 40 H -0.182 1.182 41 H -0.177 1.177 42 H 0.155 0.845 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.086 0.774 -2.388 2.735 hybrid contribution 0.388 1.349 -0.541 1.504 sum -0.698 2.123 -2.929 3.684 Atomic orbital electron populations 1.21954 0.78304 1.03710 1.02504 1.57482 1.15244 1.20831 1.89593 1.20966 0.92897 0.82799 0.98411 0.90274 1.21734 0.97707 0.97724 0.98433 1.22187 0.98513 1.05347 0.92129 1.21804 0.90712 0.96667 0.86132 0.92890 1.86500 1.37754 1.96987 1.16264 1.22193 0.97966 0.99860 0.98626 1.22578 0.99007 1.05739 0.93277 1.02221 0.73482 0.72326 0.73915 1.93498 1.40570 1.83738 1.75907 1.93605 1.66016 1.58330 1.76071 1.31126 1.04314 1.13667 1.27034 1.20905 0.96934 0.91779 0.93865 1.21166 0.97697 1.01397 0.95334 1.20688 0.93945 0.95292 0.96381 1.25201 1.13034 0.93175 0.87977 1.86631 1.43166 1.34707 1.68660 0.94847 0.75606 0.87130 0.83662 1.21190 0.99656 0.98166 0.94238 1.20998 0.94070 0.94536 0.94214 0.91101 0.89148 0.91511 0.89987 0.90263 0.91045 0.88252 0.77392 0.91393 0.91470 0.86445 0.90361 0.83796 0.84520 0.85693 0.77503 1.18193 1.17748 0.84480 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.16 8.08 59.85 0.48 0.32 16 2 N -0.99 0.88 2.52 -114.61 -0.29 0.59 16 3 C 0.15 -0.26 3.15 -67.93 -0.21 -0.48 16 4 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 5 C -0.12 0.32 4.91 -26.73 -0.13 0.19 16 6 C -0.14 0.16 4.88 -26.73 -0.13 0.03 16 7 C 0.11 -0.02 3.47 -26.73 -0.09 -0.12 16 8 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 9 O -0.57 -0.62 13.32 -35.23 -0.47 -1.09 16 10 C -0.15 -0.01 5.39 -26.73 -0.14 -0.16 16 11 C -0.17 0.09 5.22 -26.73 -0.14 -0.05 16 12 S 2.69 3.76 5.59 -107.50 -0.60 3.16 16 13 O -0.95 -2.97 13.54 -57.17 -0.77 -3.74 16 14 O -0.95 -3.91 16.46 -57.17 -0.94 -4.85 16 15 C -0.68 -0.32 5.97 -39.58 -0.24 -0.56 16 16 C -0.02 0.00 9.52 -39.58 -0.38 -0.37 16 17 C -0.14 0.14 8.67 -39.58 -0.34 -0.21 16 18 C -0.06 0.04 5.39 -104.62 -0.56 -0.52 16 19 C -0.08 0.11 2.82 36.01 0.10 0.21 16 20 O -0.53 0.03 12.77 -35.23 -0.45 -0.42 16 21 Si 0.69 -1.31 29.79 -169.99 -5.06 -6.38 16 22 C -0.11 0.03 9.61 -39.58 -0.38 -0.35 16 23 C -0.02 0.00 9.52 -39.58 -0.38 -0.38 16 24 H 0.07 -0.09 6.77 -51.93 -0.35 -0.45 16 25 H 0.09 -0.33 4.86 -51.93 -0.25 -0.58 16 26 H 0.07 -0.20 7.99 -51.93 -0.41 -0.61 16 27 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 28 H 0.08 -0.29 6.98 -51.93 -0.36 -0.65 16 29 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.10 -0.10 3.55 -51.93 -0.18 -0.29 16 31 H 0.38 -0.93 9.08 45.56 0.41 -0.52 16 32 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.07 0.10 7.60 -51.93 -0.39 -0.30 16 34 H 0.12 0.14 4.96 -51.93 -0.26 -0.12 16 35 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 36 H 0.14 -0.23 7.61 -52.49 -0.40 -0.63 16 37 H 0.14 -0.42 4.88 -52.49 -0.26 -0.67 16 38 H 0.13 -0.26 7.96 -51.93 -0.41 -0.67 16 39 H 0.38 -1.10 8.70 45.56 0.40 -0.70 16 40 H -0.26 0.05 7.11 56.52 0.40 0.45 16 41 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 42 H 0.14 -0.18 8.06 -52.48 -0.42 -0.60 16 43 H 0.14 -0.20 7.62 -52.48 -0.40 -0.60 16 LS Contribution 340.29 15.07 5.13 5.13 Total: 0.00 -9.21 340.29 -11.04 -20.25 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -5.03 Total: -10.22 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.54 Total: -2.43 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -0.29 Total: 0.59 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -2.63 Total: -10.10 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.06 Total: -6.38 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -0.60 Total: 3.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -9.21 -11.04 -20.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_15557740_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.824 kcal (2) G-P(sol) polarization free energy of solvation -9.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds